Using incanter.stats.linear-model produces CompilerException java.lang.UnsatisfiedLinkError: org.jblas.NativeBlas.dgemm

[sinemetu1]

I'm on OSX 10.9.5. I installed gcc via homebrew and included fortran. libgfortran is on my path:

export PATH=$PATH:/usr/local/Cellar/gcc/4.9.1/bin

and

$ ls -lh /usr/local/Cellar/gcc/4.9.1/bin/gfortran*
lrwxr-xr-x  1 auser  admin    12B Sep 23 23:12 /usr/local/Cellar/gcc/4.9.1/bin/gfortran -> gfortran-4.9
-r-xr-xr-x  2 auser  admin   1.1M Sep 23 23:11 /usr/local/Cellar/gcc/4.9.1/bin/gfortran-4.9

project.clj contains:

  :dependencies [[org.clojure/clojure    "1.6.0"]
                 [net.mikera/core.matrix "0.29.1"]
                 [clatrix                "0.4.0"]
                 [incanter               "1.5.5"]]

To produce from repl:

    (use 'incanter.stats)
    (def X [8.401 14.475 13.396 12.127 5.044 8.339 15.692 17.108 9.253 12.029])
    (def Y [-1.57 2.32 0.424 0.814 -2.3 0.01 1.954 2.296 -0.635 0.328])
    (def samp-linear-model
      (linear-model X Y))

    => CompilerException java.lang.UnsatisfiedLinkError:
        org.jblas.NativeBlas.dgemm(CCIIID[DII[DIID[DII)V, compiling:(form-init4455933030563083782.clj:2:3)

I also tried adding [jblas/native "1.2.0"] to my project.clj and received the same error message.

Any help is appreciated. Thanks.

[alexott]

Do you still have this problem? I'm using the homebrew with 10.8 without any problems (the same version of GCC as on your machine)

[behrica]

I got the same error by using the incanter from Docker.
For me it was a missing fortran library.

See #309