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config.yml
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config.yml
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version: 2.1
jobs:
test:
docker:
- image: ubuntu:bionic
environment:
CONDA_PREFIX: /root/tools/miniconda3
MINTPY_HOME: /root/tools/MintPy
user: root
working_directory: /root/tools/MintPy
steps:
- checkout
- run:
name: Setting Environment with Miniconda
command: |
apt update
apt-get update --yes && apt-get upgrade --yes
apt-get install --yes git wget
# download and install miniconda3
mkdir -p ${HOME}/tools
cd ${HOME}/tools
wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh
chmod +x Miniconda3-latest-Linux-x86_64.sh
./Miniconda3-latest-Linux-x86_64.sh -b -p ${HOME}/tools/miniconda3
${HOME}/tools/miniconda3/bin/conda init bash
${HOME}/tools/miniconda3/bin/conda config --add channels conda-forge
${HOME}/tools/miniconda3/bin/conda install -c conda-forge --yes mamba
- run:
name: Installing MintPy, PyAPS and PySolid
no_output_timeout: 30m
command: |
export PYTHONUNBUFFERED=1
# setup environment variable
export PYTHONPATH=${PYTHONPATH}:${MINTPY_HOME}:${HOME}/tools/PyAPS:${HOME}/tools/PySolid
export PATH=${MINTPY_HOME}/mintpy:${CONDA_PREFIX}/bin:${PATH}
# download source code
git clone https://github.com/yunjunz/PyAPS.git ${HOME}/tools/PyAPS
git clone https://github.com/insarlab/PySolid.git ${HOME}/tools/PySolid
# install dependencies
source activate root
mamba install --verbose --yes --file ${MINTPY_HOME}/docs/requirements.txt gdal>=3 fortran-compiler
pip install git+https://github.com/tylere/pykml.git
# compile pysolid Fortran code
cd ${HOME}/tools/PySolid/pysolid
f2py -c -m solid solid.for
# test installation
smallbaselineApp.py -v
tropo_pyaps3.py -h
solid_earth_tides.py -h
- run:
name: Testing MintPy on Example Dataset 1/4 - FernandinaSenDT128 (ISCE/topsStack)
command: |
export PYTHONPATH=${PYTHONPATH}:${MINTPY_HOME}:${HOME}/tools/PyAPS:${HOME}/tools/PySolid
export PATH=${MINTPY_HOME}/mintpy:${CONDA_PREFIX}/bin:${PATH}
mkdir -p ${HOME}/data
cd ${HOME}/data
${MINTPY_HOME}/test/test_smallbaselineApp.py --dir ${HOME}/data --dset FernandinaSenDT128
- run:
name: Testing MintPy on Example Dataset 2/4 - SanFranSenDT42 (ARIA)
command: |
export PYTHONPATH=${PYTHONPATH}:${MINTPY_HOME}:${HOME}/tools/PyAPS:${HOME}/tools/PySolid
export PATH=${MINTPY_HOME}/mintpy:${CONDA_PREFIX}/bin:${PATH}
mkdir -p ${HOME}/data
cd ${HOME}/data
${MINTPY_HOME}/test/test_smallbaselineApp.py --dir ${HOME}/data --dset SanFranSenDT42
- run:
name: Testing MintPy on Example Dataset 3/4 - WellsEnvD2T399 (Gamma)
command: |
export PYTHONPATH=${PYTHONPATH}:${MINTPY_HOME}:${HOME}/tools/PyAPS:${HOME}/tools/PySolid
export PATH=${MINTPY_HOME}/mintpy:${CONDA_PREFIX}/bin:${PATH}
mkdir -p ${HOME}/data
cd ${HOME}/data
${MINTPY_HOME}/test/test_smallbaselineApp.py --dir ${HOME}/data --dset WellsEnvD2T399
- run:
name: Testing MintPy on Example Dataset 4/4 - WCapeSenAT29 (SNAP)
command: |
export PYTHONPATH=${PYTHONPATH}:${MINTPY_HOME}:${HOME}/tools/PyAPS:${HOME}/tools/PySolid
export PATH=${MINTPY_HOME}/mintpy:${CONDA_PREFIX}/bin:${PATH}
mkdir -p ${HOME}/data
cd ${HOME}/data
${MINTPY_HOME}/test/test_smallbaselineApp.py --dir ${HOME}/data --dset WCapeSenAT29
workflows:
version: 2
test:
jobs:
- test