Skip to content

instituteofcancerresearch/synchro

Repository files navigation

Python Version PyPI Downloads Wheel Development Status Tests Coverage Status Code style: black

synchro

Customisable file transfers using rsync


About

Synchro is a simple python-based tool for customisable file movements, e.g. copying data to a backup server.

Synchro currently supports/includes:

  • Transfer via ssh
  • Archiving using tar (and option extraction)
  • Option to only transfer data when a specific file is present
  • Logging to file

To install

To install, you need a Unix-based system with Python (>=3.9) installed, and then:

pip install synchro

However, it is recommended to install conda (e.g. miniconda) first and create a new environment:

conda create --name synchro python=3.10
conda activate synchro
pip install synchro

If you don't have rsync installed, you will need to do so. E.g. on macOS it can be installed with homebrew:

brew install rsync

To use

synchro has two modes of use on the command line, either with flags, or a config file.

Command line flags

Not yet implemented

Config file

The only input is the path to a source directory (the one being transferred).

synchro /path/to/config.conf

This source directory must contain a synchro.conf file which contains the information needed for the transfer. Including:

  • source - Where the data comes from (contents of directory will be copied) e.g. /path/to/source_directory)
  • destination - Where to move the data to e.g. /path/to/destination_directory)
  • tar - Tar the data before copying? e.g. y
  • untar - Untar the data after copying? e.g. y
  • create_dest - Create the destination directory if it doesn't exist? e.g. y
  • transfer_ready_file - A file that must exist in the source directory (or relative path) for the transfer to initative. This option is ignored if the line is missing from synchro.conf.
  • permissions - Permissions for the destination file, in the chmod numerical format. e.g. 777. This option is ignored and defaults to 770 if the line is missing from synchro.conf.
  • owner - Username for ownership of the transferred files. This option is ignored and defaults to that of the source directory if the line is missing from synchro.conf.
  • group - Group for ownership of the transferred files. This option is ignored and defaults to that of the source directory if the line is missing from synchro.conf.

Example:

source = /path/to/source_directory
destination = /path/to/destination_directory
tar = y
untar = y 
create_dest = y 
transfer_ready_file = ready.txt
permissions = 777
owner = user1
group = staff

N.B. the destination can also be on a remote host (an ssh key must be set up), e.g.:

destination = user@IP:/path/to/destination_directory

To use with cron

N.B. This assumes you've installed in a conda environment

Example - running file transfers hourly (tested on CentOS)

  • Create a text file in /etc/cron.hourly called synchro
cd /etc/cron.hourly
touch synchro
  • Add synchro commands to the text file using the full path to the synchro executable
/home/user/miniconda3/envs/synchro/bin/synchro /path/to/config_1.conf
/home/user/miniconda3/envs/synchro/bin/synchro /path/to/config_2.conf

This will then try to backup the directories specified in config_1.conf & config_2.conf every hour.

About

Customisable file transfers using rsync

Resources

License

Stars

Watchers

Forks

Packages

No packages published

Languages