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Labware_Layout
should have a way of naming wells/slots
#19
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I have Q's
I think that's all for now. |
They need to be defined, but this could just be a string. See the example here where eight DNA samples are defined. These strings (or whatever you use to refer to them as) are then passed as arguments to the
There's a print method for
hYes, basically that. There aren't really any examples of this yet in BMS (other than the in-development DoE OTProto template), but hopefully in future development it will be possible to link together different protocol templates as modules of a larger protocol. So in this example you could use an OTProto template to perform some DNA assembly in the on-board thermocycler, and then link in the transformation OTProto template to transform the newly assembled DNA. In this case, like you said, the assembly PCR plate would initially be a destination plate, and then become a source plate for the transvomations. |
The branch merged by @jbird1223 ( #25) should have addressed this issue, so I'm closing it now. |
There should be a way of giving a name to specific wells/slots of a
Labware_Layout
object, in addition to adding contents to a well.For example, a well might contain reagents and DNA required for a DNA assembly. It should be possible to then define the name of the construct being assembled in that well:
This functionality can then be used to easily retrieve a well with multiple contents, rather than having to keep a separate list to refer to. It will also help in cases where a labware is used as a destination first, and then a source. E.g., in the case of DNA assembly, a PCR plate could be used as the destination where constructs are assembled, but then as a DNA source plate for transformation. Currently, this would require a new labware layout to be defined.
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