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pyhdk from conda-forge segfaults #51

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leshikus opened this issue Aug 30, 2022 · 19 comments
Closed

pyhdk from conda-forge segfaults #51

leshikus opened this issue Aug 30, 2022 · 19 comments
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@alexbaden @ienkovich

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@leshikus
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leshikus commented Aug 30, 2022 •
edited

Here is the scenario:

conda env remove -n omnisci-dev
conda env update -f omniscidb/scripts/mapd-deps-conda-dev-env.yml
git clone https://github.com/intel-ai/modin.git
git checkout ienkovich/pyhdk
conda activate omnisci-dev
mamba install  -c conda-forge pyhdk
cd modin/
pip install -e .
cd ..
python python/tests/modin/modin_smoke_test.py

Here is the error:

UserWarning: Distributing <class 'list'> object. This may take some time.
FutureWarning: The default dtype for empty Series will be 'object' instead of 'float64' in a future version. Specify a dtype explicitly to silence this warning.
0    12
Name: a, dtype: int64
#
# A fatal error has been detected by the Java Runtime Environment:
#
#  SIGSEGV (0xb) at pc=0x00007f2bcc5c3b85, pid=2895537, tid=2895537
#
# JRE version: OpenJDK Runtime Environment (11.0.15) (build 11.0.15-internal+0-adhoc..src)
# Java VM: OpenJDK 64-Bit Server VM (11.0.15-internal+0-adhoc..src, mixed mode, tiered, compressed oops, g1 gc, linux-amd64)
# Problematic frame:
# C  [libjimage.so+0x2b85]  ImageStrings::find(Endian*, char const*, int*, unsigned int)+0x65
#
# Core dump will be written. Default location: /localdisk2/afedotov/git/hdk/core
#
# An error report file with more information is saved as:
# /localdisk2/afedotov/git/hdk/hs_err_pid2895537.log
#
# If you would like to submit a bug report, please visit:
#   https://bugreport.java.com/bugreport/crash.jsp
#
Aborted (core dumped)
@leshikus
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The log attached
hs_err_pid2895537.log

@alexbaden
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It looks like it could be a java 11 error. I am not seeing the issue with openjdk 8. I have some other questions while I continue to investigate:

  1. Why is your JNI version showing 11, when we use 8 in our conda recipe?
  2. Is this the hdk build command? https://github.com/conda-forge/hdk-feedstock/blob/main/recipe/build-hdk.sh#L58
    If so, we need to turn folly on. Running w/out folly results in much worse memory performance. I noticed it's not in the conda recipe -- interestingly I don't have to explicitly turn it off in my env.
  3. Why do you create a new conda env and install packages, then pull hdk from conda? I thought the point of conda deployment would be that you didn't need to install packages first using a yaml file.

@Garra1980
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It looks like it could be a java 11 error. I am not seeing the issue with openjdk 8. I have some other questions while I continue to investigate:

  1. Why is your JNI version showing 11, when we use 8 in our conda recipe?

there were some issues with 8 during conda packaging @vlad-penkin can comment more. I will try 8

  1. Is this the hdk build command? https://github.com/conda-forge/hdk-feedstock/blob/main/recipe/build-hdk.sh#L58
    If so, we need to turn folly on. Running w/out folly results in much worse memory performance. I noticed it's not in the conda recipe -- interestingly I don't have to explicitly turn it off in my env.

right, we should fix this

  1. Why do you create a new conda env and install packages, then pull hdk from conda? I thought the point of conda deployment would be that you didn't need to install packages first using a yaml file.

Yeah, it's not necessary, it should run without it

@alexbaden
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Looks like this is the stack trace:

#0  0x00007ffc3c9dbb85 in ImageStrings::find(Endian*, char const*, int*, unsigned int) ()
   from /localdisk/abaden/miniconda3/envs/omnisci-dev/lib/libjimage.so
#1  0x00007ffc3c9dc62d in ImageFileReader::find_location_index(char const*, unsigned long long*) const ()
   from /localdisk/abaden/miniconda3/envs/omnisci-dev/lib/libjimage.so
#2  0x00007ffc3c9dcbb0 in JIMAGE_FindResource () from /localdisk/abaden/miniconda3/envs/omnisci-dev/lib/libjimage.so
#3  0x00007ffc2f4bd3ed in ClassPathImageEntry::open_stream(char const*, Thread*) ()
   from /localdisk/abaden/miniconda3/envs/omnisci-dev/lib/server/libjvm.so
#4  0x00007ffc2f4bf3ed in ClassLoader::load_class(Symbol*, bool, Thread*) ()
   from /localdisk/abaden/miniconda3/envs/omnisci-dev/lib/server/libjvm.so
--Type <RET> for more, q to quit, c to continue without paging--
#5  0x00007ffc2fbe9096 in SystemDictionary::load_instance_class(Symbol*, Handle, Thread*) ()
   from /localdisk/abaden/miniconda3/envs/omnisci-dev/lib/server/libjvm.so
#6  0x00007ffc2fbe7b62 in SystemDictionary::resolve_instance_class_or_null(Symbol*, Handle, Handle, Thread*) ()
   from /localdisk/abaden/miniconda3/envs/omnisci-dev/lib/server/libjvm.so
#7  0x00007ffc2fbea247 in SystemDictionary::resolve_or_fail(Symbol*, Handle, Handle, bool, Thread*) ()
   from /localdisk/abaden/miniconda3/envs/omnisci-dev/lib/server/libjvm.so
#8  0x00007ffc2f564b5d in ConstantPool::klass_at_impl(constantPoolHandle const&, int, bool, Thread*) ()
   from /localdisk/abaden/miniconda3/envs/omnisci-dev/lib/server/libjvm.so
#9  0x00007ffc2f72d3a2 in InterpreterRuntime::_new(JavaThread*, ConstantPool*, int) ()
   from /localdisk/abaden/miniconda3/envs/omnisci-dev/lib/server/libjvm.so
#10 0x00007ffc1774890a in ?? ()
#11 0x00007ffc177488c5 in ?? ()
#12 0x00007fffffffbff8 in ?? ()
#13 0x00007ffbb3b5ca20 in ?? ()
#14 0x00007fffffffc050 in ?? ()
#15 0x00007ffbb3b5d2d8 in ?? ()
#16 0x0000000000000000 in ?? ()

@vlad-penkin
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It looks like it could be a java 11 error. I am not seeing the issue with openjdk 8. I have some other questions while I continue to investigate:

  1. Why is your JNI version showing 11, when we use 8 in our conda recipe?

there were some issues with 8 during conda packaging @vlad-penkin can comment more. I will try 8

  1. Is this the hdk build command? https://github.com/conda-forge/hdk-feedstock/blob/main/recipe/build-hdk.sh#L58
    If so, we need to turn folly on. Running w/out folly results in much worse memory performance. I noticed it's not in the conda recipe -- interestingly I don't have to explicitly turn it off in my env.

right, we should fix this

  1. Why do you create a new conda env and install packages, then pull hdk from conda? I thought the point of conda deployment would be that you didn't need to install packages first using a yaml file.

Yeah, it's not necessary, it should run without it

openjdk 8 is almost EOL and not well maintained from the security perspective. openjdk 11 in preffered, conda-forge recipe pins 11.

@alexbaden
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Reproduces on openjdk 11, but not on 17 (openjdk 17.0.3).

Looks like this might be an issue with 11:
https://youtrack.jetbrains.com/issue/JBR-2607
openjdk/jdk@a8005efd

Can we go to 17?

@Garra1980
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Yes, it seems it works, testing conda-forge/hdk-feedstock#3

@leshikus
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leshikus commented Sep 1, 2022 •
edited

Here is a small update on non-conda build. It does not work with openjdk-17-jdk. Our docker builds use docker/dev/Dockerfile.* docker files which download cmake from github. The file cmake-3.24.1/Modules/FindJNI.cmake does not have an ubuntu path for openjdk-17-jdk, which results in "cannot find JNI" cmake error. How this works in a conda env I don't know. Maybe FindJNI falls back to a system JDK.

FindJNI.cmake:
  # Ubuntu specific paths for default JVM
  /usr/lib/jvm/java-11-openjdk-{libarch}    # Ubuntu 18.04 LTS
  /usr/lib/jvm/java-8-openjdk-{libarch}     # Ubuntu 15.10
  /usr/lib/jvm/java-7-openjdk-{libarch}     # Ubuntu 15.10
  /usr/lib/jvm/java-6-openjdk-{libarch}     # Ubuntu 15.10

@alexbaden
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Which container does that use? Looks like we use openjdk 11 here: https://github.com/intel-ai/hdk/blob/main/docker/Dockerfile
but maybe it has the same problem?

@leshikus
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leshikus commented Sep 1, 2022

I’be tried to change to openjdk-17-jdk and then switched it back https://github.com/intel-ai/omniscidb/runs/8128359640?check_suite_focus=true

@Garra1980
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Garra1980 commented Sep 1, 2022 •
edited

I see here https://github.com/intel-ai/omniscidb/runs/8105954470?check_suite_focus=true that openjdk-17 works fine and there is
Found JNI: /usr/share/miniconda/envs/omnisci-dev/include found components: AWT JVM in cmake log

@leshikus
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leshikus commented Sep 2, 2022 •
edited

@Garra1980 added CmakeCache.txt

# This is the CMakeCache file.
# For build in directory: /omniscidb/build
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# You can edit this file to change values found and used by cmake.
# If you do not want to change any of the values, simply exit the editor.
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COMPILE_HAVE_POSIX_REGEX:INTERNAL=TRUE
//Result of TRY_COMPILE
COMPILE_HAVE_STD_REGEX:INTERNAL=TRUE
//Result of TRY_COMPILE
COMPILE_HAVE_STEADY_CLOCK:INTERNAL=TRUE
//ADVANCED property for variable: CUDAToolkit_rt_LIBRARY
CUDAToolkit_rt_LIBRARY-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CUDA_CUDART
CUDA_CUDART-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CUDA_OpenCL_LIBRARY
CUDA_OpenCL_LIBRARY-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CUDA_cublasLt_LIBRARY
CUDA_cublasLt_LIBRARY-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CUDA_cublasLt_static_LIBRARY
CUDA_cublasLt_static_LIBRARY-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CUDA_cublas_LIBRARY
CUDA_cublas_LIBRARY-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CUDA_cublas_static_LIBRARY
CUDA_cublas_static_LIBRARY-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CUDA_cuda_driver_LIBRARY
CUDA_cuda_driver_LIBRARY-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CUDA_cudart_LIBRARY
CUDA_cudart_LIBRARY-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CUDA_cudart_static_LIBRARY
CUDA_cudart_static_LIBRARY-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CUDA_cufft_LIBRARY
CUDA_cufft_LIBRARY-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CUDA_cufft_static_LIBRARY
CUDA_cufft_static_LIBRARY-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CUDA_cufft_static_nocallback_LIBRARY
CUDA_cufft_static_nocallback_LIBRARY-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CUDA_cufftw_LIBRARY
CUDA_cufftw_LIBRARY-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CUDA_cufftw_static_LIBRARY
CUDA_cufftw_static_LIBRARY-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CUDA_culibos_LIBRARY
CUDA_culibos_LIBRARY-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CUDA_curand_LIBRARY
CUDA_curand_LIBRARY-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CUDA_curand_static_LIBRARY
CUDA_curand_static_LIBRARY-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CUDA_cusolver_LIBRARY
CUDA_cusolver_LIBRARY-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CUDA_cusolver_lapack_static_LIBRARY
CUDA_cusolver_lapack_static_LIBRARY-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CUDA_cusolver_metis_static_LIBRARY
CUDA_cusolver_metis_static_LIBRARY-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CUDA_cusolver_static_LIBRARY
CUDA_cusolver_static_LIBRARY-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CUDA_cusparse_LIBRARY
CUDA_cusparse_LIBRARY-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CUDA_cusparse_static_LIBRARY
CUDA_cusparse_static_LIBRARY-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CUDA_nppc_LIBRARY
CUDA_nppc_LIBRARY-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CUDA_nppc_static_LIBRARY
CUDA_nppc_static_LIBRARY-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CUDA_nppial_LIBRARY
CUDA_nppial_LIBRARY-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CUDA_nppial_static_LIBRARY
CUDA_nppial_static_LIBRARY-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CUDA_nppicc_LIBRARY
CUDA_nppicc_LIBRARY-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CUDA_nppicc_static_LIBRARY
CUDA_nppicc_static_LIBRARY-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CUDA_nppicom_LIBRARY
CUDA_nppicom_LIBRARY-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CUDA_nppicom_static_LIBRARY
CUDA_nppicom_static_LIBRARY-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CUDA_nppidei_LIBRARY
CUDA_nppidei_LIBRARY-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CUDA_nppidei_static_LIBRARY
CUDA_nppidei_static_LIBRARY-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CUDA_nppif_LIBRARY
CUDA_nppif_LIBRARY-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CUDA_nppif_static_LIBRARY
CUDA_nppif_static_LIBRARY-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CUDA_nppig_LIBRARY
CUDA_nppig_LIBRARY-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CUDA_nppig_static_LIBRARY
CUDA_nppig_static_LIBRARY-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CUDA_nppim_LIBRARY
CUDA_nppim_LIBRARY-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CUDA_nppim_static_LIBRARY
CUDA_nppim_static_LIBRARY-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CUDA_nppist_LIBRARY
CUDA_nppist_LIBRARY-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CUDA_nppist_static_LIBRARY
CUDA_nppist_static_LIBRARY-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CUDA_nppisu_LIBRARY
CUDA_nppisu_LIBRARY-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CUDA_nppisu_static_LIBRARY
CUDA_nppisu_static_LIBRARY-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CUDA_nppitc_LIBRARY
CUDA_nppitc_LIBRARY-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CUDA_nppitc_static_LIBRARY
CUDA_nppitc_static_LIBRARY-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CUDA_npps_LIBRARY
CUDA_npps_LIBRARY-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CUDA_npps_static_LIBRARY
CUDA_npps_static_LIBRARY-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CUDA_nvToolsExt_LIBRARY
CUDA_nvToolsExt_LIBRARY-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CUDA_nvgraph_LIBRARY
CUDA_nvgraph_LIBRARY-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CUDA_nvgraph_static_LIBRARY
CUDA_nvgraph_static_LIBRARY-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CUDA_nvjpeg_LIBRARY
CUDA_nvjpeg_LIBRARY-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CUDA_nvjpeg_static_LIBRARY
CUDA_nvjpeg_static_LIBRARY-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CUDA_nvml_LIBRARY
CUDA_nvml_LIBRARY-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CUDA_nvrtc_LIBRARY
CUDA_nvrtc_LIBRARY-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CURL_DIR
CURL_DIR-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CURL_INCLUDE_DIR
CURL_INCLUDE_DIR-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CURL_LIBRARY_DEBUG
CURL_LIBRARY_DEBUG-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CURL_LIBRARY_RELEASE
CURL_LIBRARY_RELEASE-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CURSES_CURSES_LIBRARY
CURSES_CURSES_LIBRARY-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CURSES_FORM_LIBRARY
CURSES_FORM_LIBRARY-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CURSES_INCLUDE_PATH
CURSES_INCLUDE_PATH-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CURSES_NCURSES_LIBRARY
CURSES_NCURSES_LIBRARY-ADVANCED:INTERNAL=1
//Details about finding Arrow
FIND_PACKAGE_MESSAGE_DETAILS_Arrow:INTERNAL=[/usr/lib/x86_64-linux-gnu/libarrow.so][v()]
//Details about finding CUDAToolkit
FIND_PACKAGE_MESSAGE_DETAILS_CUDAToolkit:INTERNAL=[/usr/local/cuda-11.7/include][/usr/local/cuda-11.7/lib64/libcudart.so][/usr/local/cuda-11.7/bin][v11.7.99()]
//Details about finding Curses
FIND_PACKAGE_MESSAGE_DETAILS_Curses:INTERNAL=[/usr/lib/x86_64-linux-gnu/libcurses.so][/usr/include][v()]
//Details about finding Gflags
FIND_PACKAGE_MESSAGE_DETAILS_Gflags:INTERNAL=[/usr/lib/x86_64-linux-gnu/libgflags.so][v()]
//Details about finding Git
FIND_PACKAGE_MESSAGE_DETAILS_Git:INTERNAL=[/usr/bin/git][v2.25.1()]
//Details about finding Glog
FIND_PACKAGE_MESSAGE_DETAILS_Glog:INTERNAL=[/usr/lib/x86_64-linux-gnu/libglog.so][/usr/include][v()]
//Details about finding OpenSSL
FIND_PACKAGE_MESSAGE_DETAILS_OpenSSL:INTERNAL=[/usr/lib/x86_64-linux-gnu/libcrypto.so][/usr/include][c ][v1.1.1f()]
//Details about finding Parquet
FIND_PACKAGE_MESSAGE_DETAILS_Parquet:INTERNAL=[/usr/lib/x86_64-linux-gnu/libparquet.so][v()]
//Details about finding Snappy
FIND_PACKAGE_MESSAGE_DETAILS_Snappy:INTERNAL=[/usr/lib/x86_64-linux-gnu/libsnappy.so][v()]
//Details about finding Threads
FIND_PACKAGE_MESSAGE_DETAILS_Threads:INTERNAL=[TRUE][v()]
//Details about finding ZLIB
FIND_PACKAGE_MESSAGE_DETAILS_ZLIB:INTERNAL=[/usr/lib/x86_64-linux-gnu/libz.so][/usr/include][v1.2.11()]
//ADVANCED property for variable: GIT_EXECUTABLE
GIT_EXECUTABLE-ADVANCED:INTERNAL=1
//Result of TRY_COMPILE
HAVE_ARROW_4_IO_CONTEXT:INTERNAL=TRUE
//Test HAVE_CXX_FLAG_COVERAGE
HAVE_CXX_FLAG_COVERAGE:INTERNAL=1
//Test HAVE_CXX_FLAG_FSTRICT_ALIASING
HAVE_CXX_FLAG_FSTRICT_ALIASING:INTERNAL=1
//Test HAVE_CXX_FLAG_PEDANTIC
HAVE_CXX_FLAG_PEDANTIC:INTERNAL=1
//Test HAVE_CXX_FLAG_PEDANTIC_ERRORS
HAVE_CXX_FLAG_PEDANTIC_ERRORS:INTERNAL=1
//Test HAVE_CXX_FLAG_STD_CXX11
HAVE_CXX_FLAG_STD_CXX11:INTERNAL=1
//Test HAVE_CXX_FLAG_WALL
HAVE_CXX_FLAG_WALL:INTERNAL=1
//Test HAVE_CXX_FLAG_WD654
HAVE_CXX_FLAG_WD654:INTERNAL=
//Test HAVE_CXX_FLAG_WERROR
HAVE_CXX_FLAG_WERROR:INTERNAL=1
//Test HAVE_CXX_FLAG_WEXTRA
HAVE_CXX_FLAG_WEXTRA:INTERNAL=1
//Test HAVE_CXX_FLAG_WNO_DEPRECATED
HAVE_CXX_FLAG_WNO_DEPRECATED:INTERNAL=1
//Test HAVE_CXX_FLAG_WNO_DEPRECATED_DECLARATIONS
HAVE_CXX_FLAG_WNO_DEPRECATED_DECLARATIONS:INTERNAL=1
//Test HAVE_CXX_FLAG_WSHADOW
HAVE_CXX_FLAG_WSHADOW:INTERNAL=1
//Test HAVE_CXX_FLAG_WSHORTEN_64_TO_32
HAVE_CXX_FLAG_WSHORTEN_64_TO_32:INTERNAL=
//Test HAVE_CXX_FLAG_WSTRICT_ALIASING
HAVE_CXX_FLAG_WSTRICT_ALIASING:INTERNAL=1
//Test HAVE_CXX_FLAG_WTHREAD_SAFETY
HAVE_CXX_FLAG_WTHREAD_SAFETY:INTERNAL=
//STRINGS property for variable: MAPD_EDITION
MAPD_EDITION-STRINGS:INTERNAL=EE;CE;OS
NCURSES_CFLAGS:INTERNAL=-D_DEFAULT_SOURCE;-D_XOPEN_SOURCE=600
NCURSES_CFLAGS_I:INTERNAL=
NCURSES_CFLAGS_OTHER:INTERNAL=-D_DEFAULT_SOURCE;-D_XOPEN_SOURCE=600
NCURSES_FOUND:INTERNAL=1
NCURSES_INCLUDEDIR:INTERNAL=/usr/include
NCURSES_INCLUDE_DIRS:INTERNAL=
NCURSES_LDFLAGS:INTERNAL=-Wl,-Bsymbolic-functions;-lncurses;-ltinfo
NCURSES_LDFLAGS_OTHER:INTERNAL=-Wl,-Bsymbolic-functions
NCURSES_LIBDIR:INTERNAL=/usr/lib/x86_64-linux-gnu
NCURSES_LIBRARIES:INTERNAL=ncurses;tinfo
NCURSES_LIBRARY_DIRS:INTERNAL=
NCURSES_LIBS:INTERNAL=
NCURSES_LIBS_L:INTERNAL=
NCURSES_LIBS_OTHER:INTERNAL=
NCURSES_LIBS_PATHS:INTERNAL=
NCURSES_MODULE_NAME:INTERNAL=ncurses
NCURSES_PREFIX:INTERNAL=/usr
NCURSES_STATIC_CFLAGS:INTERNAL=-D_DEFAULT_SOURCE;-D_XOPEN_SOURCE=600
NCURSES_STATIC_CFLAGS_I:INTERNAL=
NCURSES_STATIC_CFLAGS_OTHER:INTERNAL=-D_DEFAULT_SOURCE;-D_XOPEN_SOURCE=600
NCURSES_STATIC_INCLUDE_DIRS:INTERNAL=
NCURSES_STATIC_LDFLAGS:INTERNAL=-Wl,-Bsymbolic-functions;-lncurses;-ltinfo;-ldl
NCURSES_STATIC_LDFLAGS_OTHER:INTERNAL=-Wl,-Bsymbolic-functions
NCURSES_STATIC_LIBDIR:INTERNAL=
NCURSES_STATIC_LIBRARIES:INTERNAL=ncurses;tinfo;dl
NCURSES_STATIC_LIBRARY_DIRS:INTERNAL=
NCURSES_STATIC_LIBS:INTERNAL=
NCURSES_STATIC_LIBS_L:INTERNAL=
NCURSES_STATIC_LIBS_OTHER:INTERNAL=
NCURSES_STATIC_LIBS_PATHS:INTERNAL=
NCURSES_VERSION:INTERNAL=6.2.20200212
NCURSES_ncurses_INCLUDEDIR:INTERNAL=
NCURSES_ncurses_LIBDIR:INTERNAL=
NCURSES_ncurses_PREFIX:INTERNAL=
NCURSES_ncurses_VERSION:INTERNAL=
//ADVANCED property for variable: OPENSSL_CRYPTO_LIBRARY
OPENSSL_CRYPTO_LIBRARY-ADVANCED:INTERNAL=1
//ADVANCED property for variable: OPENSSL_INCLUDE_DIR
OPENSSL_INCLUDE_DIR-ADVANCED:INTERNAL=1
//ADVANCED property for variable: OPENSSL_SSL_LIBRARY
OPENSSL_SSL_LIBRARY-ADVANCED:INTERNAL=1
PC_CURL_CFLAGS:INTERNAL=-I/usr/include/x86_64-linux-gnu
PC_CURL_CFLAGS_I:INTERNAL=
PC_CURL_CFLAGS_OTHER:INTERNAL=
PC_CURL_FOUND:INTERNAL=1
PC_CURL_INCLUDEDIR:INTERNAL=/usr/include/x86_64-linux-gnu
PC_CURL_INCLUDE_DIRS:INTERNAL=/usr/include/x86_64-linux-gnu
PC_CURL_LDFLAGS:INTERNAL=-L/usr/lib/x86_64-linux-gnu;-lcurl
PC_CURL_LDFLAGS_OTHER:INTERNAL=
PC_CURL_LIBDIR:INTERNAL=/usr/lib/x86_64-linux-gnu
PC_CURL_LIBRARIES:INTERNAL=curl
PC_CURL_LIBRARY_DIRS:INTERNAL=/usr/lib/x86_64-linux-gnu
PC_CURL_LIBS:INTERNAL=
PC_CURL_LIBS_L:INTERNAL=
PC_CURL_LIBS_OTHER:INTERNAL=
PC_CURL_LIBS_PATHS:INTERNAL=
PC_CURL_MODULE_NAME:INTERNAL=libcurl
PC_CURL_PREFIX:INTERNAL=/usr
PC_CURL_STATIC_CFLAGS:INTERNAL=-I/usr/include/x86_64-linux-gnu
PC_CURL_STATIC_CFLAGS_I:INTERNAL=
PC_CURL_STATIC_CFLAGS_OTHER:INTERNAL=
PC_CURL_STATIC_INCLUDE_DIRS:INTERNAL=/usr/include/x86_64-linux-gnu
PC_CURL_STATIC_LDFLAGS:INTERNAL=-L/usr/lib/x86_64-linux-gnu;-L/usr/lib/x86_64-linux-gnu/mit-krb5;-lcurl;-lnghttp2;-lidn2;-lrtmp;-lssh;-lpsl;-lssl;-lcrypto;-lssl;-lcrypto;-Wl,-Bsymbolic-functions;-Wl,-z,relro;-lgssapi_krb5;-lkrb5;-lk5crypto;-lcom_err;-llber;-lldap;-llber;-lbrotlidec;-lz
PC_CURL_STATIC_LDFLAGS_OTHER:INTERNAL=-Wl,-Bsymbolic-functions;-Wl,-z,relro
PC_CURL_STATIC_LIBDIR:INTERNAL=
PC_CURL_STATIC_LIBRARIES:INTERNAL=curl;nghttp2;idn2;rtmp;ssh;psl;ssl;crypto;ssl;crypto;gssapi_krb5;krb5;k5crypto;com_err;lber;ldap;lber;brotlidec;z
PC_CURL_STATIC_LIBRARY_DIRS:INTERNAL=/usr/lib/x86_64-linux-gnu;/usr/lib/x86_64-linux-gnu/mit-krb5
PC_CURL_STATIC_LIBS:INTERNAL=
PC_CURL_STATIC_LIBS_L:INTERNAL=
PC_CURL_STATIC_LIBS_OTHER:INTERNAL=
PC_CURL_STATIC_LIBS_PATHS:INTERNAL=
PC_CURL_VERSION:INTERNAL=7.68.0
PC_CURL_libcurl_INCLUDEDIR:INTERNAL=
PC_CURL_libcurl_LIBDIR:INTERNAL=
PC_CURL_libcurl_PREFIX:INTERNAL=
PC_CURL_libcurl_VERSION:INTERNAL=
//ADVANCED property for variable: PKG_CONFIG_ARGN
PKG_CONFIG_ARGN-ADVANCED:INTERNAL=1
//ADVANCED property for variable: PKG_CONFIG_EXECUTABLE
PKG_CONFIG_EXECUTABLE-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ProcessorCount_cmd_nproc
ProcessorCount_cmd_nproc-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ProcessorCount_cmd_sysctl
ProcessorCount_cmd_sysctl-ADVANCED:INTERNAL=1
//Result of try_run()
RUN_HAVE_POSIX_REGEX:INTERNAL=0
//Result of try_run()
RUN_HAVE_STD_REGEX:INTERNAL=0
//Result of try_run()
RUN_HAVE_STEADY_CLOCK:INTERNAL=0
//Result of TRY_COMPILE
THREADS_HAVE_PTHREAD_ARG:INTERNAL=TRUE
//ADVANCED property for variable: ZLIB_INCLUDE_DIR
ZLIB_INCLUDE_DIR-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ZLIB_LIBRARY_DEBUG
ZLIB_LIBRARY_DEBUG-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ZLIB_LIBRARY_RELEASE
ZLIB_LIBRARY_RELEASE-ADVANCED:INTERNAL=1
//linker supports push/pop state
_CMAKE_LINKER_PUSHPOP_STATE_SUPPORTED:INTERNAL=TRUE
//CMAKE_INSTALL_PREFIX during last run
_GNUInstallDirs_LAST_CMAKE_INSTALL_PREFIX:INTERNAL=/usr/local
_OPENSSL_CFLAGS:INTERNAL=
_OPENSSL_CFLAGS_I:INTERNAL=
_OPENSSL_CFLAGS_OTHER:INTERNAL=
_OPENSSL_FOUND:INTERNAL=1
_OPENSSL_INCLUDEDIR:INTERNAL=/usr/include
_OPENSSL_INCLUDE_DIRS:INTERNAL=
_OPENSSL_LDFLAGS:INTERNAL=-L/usr/lib/x86_64-linux-gnu;-lssl;-lcrypto
_OPENSSL_LDFLAGS_OTHER:INTERNAL=
_OPENSSL_LIBDIR:INTERNAL=/usr/lib/x86_64-linux-gnu
_OPENSSL_LIBRARIES:INTERNAL=ssl;crypto
_OPENSSL_LIBRARY_DIRS:INTERNAL=/usr/lib/x86_64-linux-gnu
_OPENSSL_LIBS:INTERNAL=
_OPENSSL_LIBS_L:INTERNAL=
_OPENSSL_LIBS_OTHER:INTERNAL=
_OPENSSL_LIBS_PATHS:INTERNAL=
_OPENSSL_MODULE_NAME:INTERNAL=openssl
_OPENSSL_PREFIX:INTERNAL=/usr
_OPENSSL_STATIC_CFLAGS:INTERNAL=
_OPENSSL_STATIC_CFLAGS_I:INTERNAL=
_OPENSSL_STATIC_CFLAGS_OTHER:INTERNAL=
_OPENSSL_STATIC_INCLUDE_DIRS:INTERNAL=
_OPENSSL_STATIC_LDFLAGS:INTERNAL=-L/usr/lib/x86_64-linux-gnu;-lssl;-lcrypto;-ldl;-pthread
_OPENSSL_STATIC_LDFLAGS_OTHER:INTERNAL=-pthread
_OPENSSL_STATIC_LIBDIR:INTERNAL=
_OPENSSL_STATIC_LIBRARIES:INTERNAL=ssl;crypto;dl
_OPENSSL_STATIC_LIBRARY_DIRS:INTERNAL=/usr/lib/x86_64-linux-gnu
_OPENSSL_STATIC_LIBS:INTERNAL=
_OPENSSL_STATIC_LIBS_L:INTERNAL=
_OPENSSL_STATIC_LIBS_OTHER:INTERNAL=
_OPENSSL_STATIC_LIBS_PATHS:INTERNAL=
_OPENSSL_VERSION:INTERNAL=1.1.1f
_OPENSSL_openssl_INCLUDEDIR:INTERNAL=
_OPENSSL_openssl_LIBDIR:INTERNAL=
_OPENSSL_openssl_PREFIX:INTERNAL=
_OPENSSL_openssl_VERSION:INTERNAL=
__pkg_config_arguments_NCURSES:INTERNAL=QUIET;ncurses
__pkg_config_arguments_PC_CURL:INTERNAL=QUIET;libcurl
__pkg_config_arguments__OPENSSL:INTERNAL=QUIET;openssl
__pkg_config_checked_NCURSES:INTERNAL=1
__pkg_config_checked_PC_CURL:INTERNAL=1
__pkg_config_checked__OPENSSL:INTERNAL=1
//ADVANCED property for variable: boost_atomic_DIR
boost_atomic_DIR-ADVANCED:INTERNAL=1
//ADVANCED property for variable: boost_chrono_DIR
boost_chrono_DIR-ADVANCED:INTERNAL=1
//ADVANCED property for variable: boost_date_time_DIR
boost_date_time_DIR-ADVANCED:INTERNAL=1
//ADVANCED property for variable: boost_filesystem_DIR
boost_filesystem_DIR-ADVANCED:INTERNAL=1
//ADVANCED property for variable: boost_headers_DIR
boost_headers_DIR-ADVANCED:INTERNAL=1
//ADVANCED property for variable: boost_iostreams_DIR
boost_iostreams_DIR-ADVANCED:INTERNAL=1
//ADVANCED property for variable: boost_locale_DIR
boost_locale_DIR-ADVANCED:INTERNAL=1
//ADVANCED property for variable: boost_log_DIR
boost_log_DIR-ADVANCED:INTERNAL=1
//ADVANCED property for variable: boost_log_setup_DIR
boost_log_setup_DIR-ADVANCED:INTERNAL=1
//ADVANCED property for variable: boost_program_options_DIR
boost_program_options_DIR-ADVANCED:INTERNAL=1
//ADVANCED property for variable: boost_regex_DIR
boost_regex_DIR-ADVANCED:INTERNAL=1
//ADVANCED property for variable: boost_system_DIR
boost_system_DIR-ADVANCED:INTERNAL=1
//ADVANCED property for variable: boost_thread_DIR
boost_thread_DIR-ADVANCED:INTERNAL=1
//ADVANCED property for variable: boost_timer_DIR
boost_timer_DIR-ADVANCED:INTERNAL=1
//ADVANCED property for variable: pkgcfg_lib_NCURSES_ncurses
pkgcfg_lib_NCURSES_ncurses-ADVANCED:INTERNAL=1
//ADVANCED property for variable: pkgcfg_lib_NCURSES_tinfo
pkgcfg_lib_NCURSES_tinfo-ADVANCED:INTERNAL=1
//ADVANCED property for variable: pkgcfg_lib_PC_CURL_curl
pkgcfg_lib_PC_CURL_curl-ADVANCED:INTERNAL=1
//ADVANCED property for variable: pkgcfg_lib__OPENSSL_crypto
pkgcfg_lib__OPENSSL_crypto-ADVANCED:INTERNAL=1
//ADVANCED property for variable: pkgcfg_lib__OPENSSL_ssl
pkgcfg_lib__OPENSSL_ssl-ADVANCED:INTERNAL=1
prefix_result:INTERNAL=SSL;IPv6;UnixSockets;libz;brotli;AsynchDNS;IDN;GSS-API;PSL;SPNEGO;Kerberos;NTLM;NTLM_WB;TLS-SRP;HTTP2;HTTPS-proxy

@leshikus
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leshikus commented Sep 6, 2022

I've patched cmake (sed -i -e 's#/usr/lib/jvm/java-6-openjdk#/usr/lib/jvm/java-17-openjdk#' cmake-3.24.1/Modules/FindJNI.cmake) and it correctly finds JNI, yet Calcite does not build against it. https://github.com/intel-ai/omniscidb/runs/8205017701?check_suite_focus=true

@leshikus
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leshikus commented Sep 6, 2022

It seems maven cannot work with openjdk-17

[ERROR] Error executing Maven.
com.google.common.util.concurrent.UncheckedExecutionException: java.lang.IllegalStateException: Unable to load cache item
    at com.google.common.cache.LocalCache$Segment.get (LocalCache.java:2205)
    at com.google.common.cache.LocalCache.get (LocalCache.java:3951)
    at com.google.common.cache.LocalCache.getOrLoad (LocalCache.java:3955)
    at com.google.common.cache.LocalCache$LocalLoadingCache.get (LocalCache.java:4870)
    at com.google.common.cache.LocalCache$LocalLoadingCache.getUnchecked (LocalCache.java:4876)
    at com.google.inject.internal.FailableCache.get (FailableCache.java:51)
    at com.google.inject.internal.ConstructorInjectorStore.get (ConstructorInjectorStore.java:48)
    at com.google.inject.internal.ConstructorBindingImpl.initialize (ConstructorBindingImpl.java:155)
    at com.google.inject.internal.InjectorImpl.initializeBinding (InjectorImpl.java:581)
    at com.google.inject.internal.AbstractBindingProcessor$Processor$1.run (AbstractBindingProcessor.java:176)
    at com.google.inject.internal.ProcessedBindingData.initializeBindings (ProcessedBindingData.java:49)
    at com.google.inject.internal.InternalInjectorCreator.initializeStatically (InternalInjectorCreator.java:122)
    at com.google.inject.internal.InternalInjectorCreator.build (InternalInjectorCreator.java:106)
    at com.google.inject.Guice.createInjector (Guice.java:87)
    at com.google.inject.Guice.createInjector (Guice.java:69)
    at com.google.inject.Guice.createInjector (Guice.java:59)
    at org.codehaus.plexus.DefaultPlexusContainer.addPlexusInjector (DefaultPlexusContainer.java:481)
    at org.codehaus.plexus.DefaultPlexusContainer.<init> (DefaultPlexusContainer.java:206)
    at org.apache.maven.cli.MavenCli.loadCoreExtensions (MavenCli.java:721)
    at org.apache.maven.cli.MavenCli.container (MavenCli.java:618)
    at org.apache.maven.cli.MavenCli.doMain (MavenCli.java:282)
    at org.apache.maven.cli.MavenCli.main (MavenCli.java:193)
    at jdk.internal.reflect.NativeMethodAccessorImpl.invoke0 (Native Method)
    at jdk.internal.reflect.NativeMethodAccessorImpl.invoke (NativeMethodAccessorImpl.java:77)
    at jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke (DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke (Method.java:568)
    at org.codehaus.plexus.classworlds.launcher.Launcher.launchEnhanced (Launcher.java:282)
    at org.codehaus.plexus.classworlds.launcher.Launcher.launch (Launcher.java:225)
    at org.codehaus.plexus.classworlds.launcher.Launcher.mainWithExitCode (Launcher.java:406)
    at org.codehaus.plexus.classworlds.launcher.Launcher.main (Launcher.java:347)
Caused by: java.lang.IllegalStateException: Unable to load cache item
    at com.google.inject.internal.cglib.core.internal.$LoadingCache.createEntry (LoadingCache.java:79)
    at com.google.inject.internal.cglib.core.internal.$LoadingCache.get (LoadingCache.java:34)
    at com.google.inject.internal.cglib.core.$AbstractClassGenerator$ClassLoaderData.get (AbstractClassGenerator.java:116)
    at com.google.inject.internal.cglib.core.$AbstractClassGenerator.create (AbstractClassGenerator.java:291)
    at com.google.inject.internal.cglib.reflect.$FastClass$Generator.create (FastClass.java:65)
    at com.google.inject.internal.BytecodeGen.newFastClassForMember (BytecodeGen.java:258)
    at com.google.inject.internal.BytecodeGen.newFastClassForMember (BytecodeGen.java:207)
    at com.google.inject.internal.DefaultConstructionProxyFactory.create (DefaultConstructionProxyFactory.java:49)
    at com.google.inject.internal.ProxyFactory.create (ProxyFactory.java:156)
    at com.google.inject.internal.ConstructorInjectorStore.createConstructor (ConstructorInjectorStore.java:92)
    at com.google.inject.internal.ConstructorInjectorStore.access$000 (ConstructorInjectorStore.java:29)
    at com.google.inject.internal.ConstructorInjectorStore$1.create (ConstructorInjectorStore.java:37)
    at com.google.inject.internal.ConstructorInjectorStore$1.create (ConstructorInjectorStore.java:33)
    at com.google.inject.internal.FailableCache$1.load (FailableCache.java:40)
    at com.google.common.cache.LocalCache$LoadingValueReference.loadFuture (LocalCache.java:3540)
    at com.google.common.cache.LocalCache$Segment.loadSync (LocalCache.java:2321)
    at com.google.common.cache.LocalCache$Segment.lockedGetOrLoad (LocalCache.java:2284)
    at com.google.common.cache.LocalCache$Segment.get (LocalCache.java:2199)
    at com.google.common.cache.LocalCache.get (LocalCache.java:3951)
    at com.google.common.cache.LocalCache.getOrLoad (LocalCache.java:3955)
    at com.google.common.cache.LocalCache$LocalLoadingCache.get (LocalCache.java:4870)
    at com.google.common.cache.LocalCache$LocalLoadingCache.getUnchecked (LocalCache.java:4876)
    at com.google.inject.internal.FailableCache.get (FailableCache.java:51)
    at com.google.inject.internal.ConstructorInjectorStore.get (ConstructorInjectorStore.java:48)
    at com.google.inject.internal.ConstructorBindingImpl.initialize (ConstructorBindingImpl.java:155)
    at com.google.inject.internal.InjectorImpl.initializeBinding (InjectorImpl.java:581)
    at com.google.inject.internal.AbstractBindingProcessor$Processor$1.run (AbstractBindingProcessor.java:176)
    at com.google.inject.internal.ProcessedBindingData.initializeBindings (ProcessedBindingData.java:49)
    at com.google.inject.internal.InternalInjectorCreator.initializeStatically (InternalInjectorCreator.java:122)
    at com.google.inject.internal.InternalInjectorCreator.build (InternalInjectorCreator.java:106)
    at com.google.inject.Guice.createInjector (Guice.java:87)
    at com.google.inject.Guice.createInjector (Guice.java:69)
    at com.google.inject.Guice.createInjector (Guice.java:59)
    at org.codehaus.plexus.DefaultPlexusContainer.addPlexusInjector (DefaultPlexusContainer.java:481)
    at org.codehaus.plexus.DefaultPlexusContainer.<init> (DefaultPlexusContainer.java:206)
    at org.apache.maven.cli.MavenCli.loadCoreExtensions (MavenCli.java:721)
    at org.apache.maven.cli.MavenCli.container (MavenCli.java:618)
    at org.apache.maven.cli.MavenCli.doMain (MavenCli.java:282)
    at org.apache.maven.cli.MavenCli.main (MavenCli.java:193)
    at jdk.internal.reflect.NativeMethodAccessorImpl.invoke0 (Native Method)
    at jdk.internal.reflect.NativeMethodAccessorImpl.invoke (NativeMethodAccessorImpl.java:77)
    at jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke (DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke (Method.java:568)
    at org.codehaus.plexus.classworlds.launcher.Launcher.launchEnhanced (Launcher.java:282)
    at org.codehaus.plexus.classworlds.launcher.Launcher.launch (Launcher.java:225)
    at org.codehaus.plexus.classworlds.launcher.Launcher.mainWithExitCode (Launcher.java:406)
    at org.codehaus.plexus.classworlds.launcher.Launcher.main (Launcher.java:347)
Caused by: java.lang.NoClassDefFoundError: Could not initialize class com.google.inject.internal.cglib.core.$MethodWrapper
    at com.google.inject.internal.cglib.core.$DuplicatesPredicate.evaluate (DuplicatesPredicate.java:104)
    at com.google.inject.internal.cglib.core.$CollectionUtils.filter (CollectionUtils.java:52)
    at com.google.inject.internal.cglib.reflect.$FastClassEmitter.<init> (FastClassEmitter.java:69)
    at com.google.inject.internal.cglib.reflect.$FastClass$Generator.generateClass (FastClass.java:77)
    at com.google.inject.internal.cglib.core.$DefaultGeneratorStrategy.generate (DefaultGeneratorStrategy.java:25)
    at com.google.inject.internal.cglib.core.$AbstractClassGenerator.generate (AbstractClassGenerator.java:329)
    at com.google.inject.internal.cglib.core.$AbstractClassGenerator$ClassLoaderData$3.apply (AbstractClassGenerator.java:93)
    at com.google.inject.internal.cglib.core.$AbstractClassGenerator$ClassLoaderData$3.apply (AbstractClassGenerator.java:91)
    at com.google.inject.internal.cglib.core.internal.$LoadingCache$2.call (LoadingCache.java:54)
    at java.util.concurrent.FutureTask.run (FutureTask.java:264)
    at com.google.inject.internal.cglib.core.internal.$LoadingCache.createEntry (LoadingCache.java:61)
    at com.google.inject.internal.cglib.core.internal.$LoadingCache.get (LoadingCache.java:34)
    at com.google.inject.internal.cglib.core.$AbstractClassGenerator$ClassLoaderData.get (AbstractClassGenerator.java:116)
    at com.google.inject.internal.cglib.core.$AbstractClassGenerator.create (AbstractClassGenerator.java:291)
    at com.google.inject.internal.cglib.reflect.$FastClass$Generator.create (FastClass.java:65)
    at com.google.inject.internal.BytecodeGen.newFastClassForMember (BytecodeGen.java:258)
    at com.google.inject.internal.BytecodeGen.newFastClassForMember (BytecodeGen.java:207)
    at com.google.inject.internal.DefaultConstructionProxyFactory.create (DefaultConstructionProxyFactory.java:49)
    at com.google.inject.internal.ProxyFactory.create (ProxyFactory.java:156)
    at com.google.inject.internal.ConstructorInjectorStore.createConstructor (ConstructorInjectorStore.java:92)
    at com.google.inject.internal.ConstructorInjectorStore.access$000 (ConstructorInjectorStore.java:29)
    at com.google.inject.internal.ConstructorInjectorStore$1.create (ConstructorInjectorStore.java:37)
    at com.google.inject.internal.ConstructorInjectorStore$1.create (ConstructorInjectorStore.java:33)
    at com.google.inject.internal.FailableCache$1.load (FailableCache.java:40)
    at com.google.common.cache.LocalCache$LoadingValueReference.loadFuture (LocalCache.java:3540)
    at com.google.common.cache.LocalCache$Segment.loadSync (LocalCache.java:2321)
    at com.google.common.cache.LocalCache$Segment.lockedGetOrLoad (LocalCache.java:2284)
    at com.google.common.cache.LocalCache$Segment.get (LocalCache.java:2199)
    at com.google.common.cache.LocalCache.get (LocalCache.java:3951)
    at com.google.common.cache.LocalCache.getOrLoad (LocalCache.java:3955)
    at com.google.common.cache.LocalCache$LocalLoadingCache.get (LocalCache.java:4870)
    at com.google.common.cache.LocalCache$LocalLoadingCache.getUnchecked (LocalCache.java:4876)
    at com.google.inject.internal.FailableCache.get (FailableCache.java:51)
    at com.google.inject.internal.ConstructorInjectorStore.get (ConstructorInjectorStore.java:48)
    at com.google.inject.internal.ConstructorBindingImpl.initialize (ConstructorBindingImpl.java:155)
    at com.google.inject.internal.InjectorImpl.initializeBinding (InjectorImpl.java:581)
    at com.google.inject.internal.AbstractBindingProcessor$Processor$1.run (AbstractBindingProcessor.java:176)
    at com.google.inject.internal.ProcessedBindingData.initializeBindings (ProcessedBindingData.java:49)
    at com.google.inject.internal.InternalInjectorCreator.initializeStatically (InternalInjectorCreator.java:122)
    at com.google.inject.internal.InternalInjectorCreator.build (InternalInjectorCreator.java:106)
    at com.google.inject.Guice.createInjector (Guice.java:87)
    at com.google.inject.Guice.createInjector (Guice.java:69)
    at com.google.inject.Guice.createInjector (Guice.java:59)
    at org.codehaus.plexus.DefaultPlexusContainer.addPlexusInjector (DefaultPlexusContainer.java:481)
    at org.codehaus.plexus.DefaultPlexusContainer.<init> (DefaultPlexusContainer.java:206)
    at org.apache.maven.cli.MavenCli.loadCoreExtensions (MavenCli.java:721)
    at org.apache.maven.cli.MavenCli.container (MavenCli.java:618)
    at org.apache.maven.cli.MavenCli.doMain (MavenCli.java:282)
    at org.apache.maven.cli.MavenCli.main (MavenCli.java:193)
    at jdk.internal.reflect.NativeMethodAccessorImpl.invoke0 (Native Method)
    at jdk.internal.reflect.NativeMethodAccessorImpl.invoke (NativeMethodAccessorImpl.java:77)
    at jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke (DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke (Method.java:568)
    at org.codehaus.plexus.classworlds.launcher.Launcher.launchEnhanced (Launcher.java:282)
    at org.codehaus.plexus.classworlds.launcher.Launcher.launch (Launcher.java:225)
    at org.codehaus.plexus.classworlds.launcher.Launcher.mainWithExitCode (Launcher.java:406)
    at org.codehaus.plexus.classworlds.launcher.Launcher.main (Launcher.java:347)

@leshikus
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leshikus commented Sep 6, 2022

Here the related case is described https://stackoverflow.com/questions/44438848/maven-crashes-when-trying-to-compile-a-project-error-executing-maven

@Garra1980
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I've patched cmake (sed -i -e 's#/usr/lib/jvm/java-6-openjdk#/usr/lib/jvm/java-17-openjdk#' cmake-3.24.1/Modules/FindJNI.cmake) and it correctly finds JNI, yet Calcite does not build against it. https://github.com/intel-ai/omniscidb/runs/8205017701?check_suite_focus=true

This is weird, likely means that installation is not correct

@leshikus
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leshikus commented Sep 6, 2022

"This is weird, likely means that installation is not correct"

IMHO the problem is maven build is linked to jdk, the same problem is descibed on Stackoverflow, see the link above

@Garra1980
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Everything works with conda so should do without it this is my point

@Garra1980
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Closing as fixed, issues with docker will be handled in separate issue

@leshikus leshikus mentioned this issue Sep 7, 2022
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@leshikus @alexbaden @ienkovich @Garra1980 @vlad-penkin