"make clean; make stencil=iso3dfd" error #240
Comments
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@mengshanfeng: Unfortunately, I can't figure out from your output what the actual error is. Maybe the error message was cut out of the output. Can you capture all the stdout and stderr, put that in something like https://pastebin.com/ and put a link to it here? Thanks. |
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https://pastebin.com/nEt579kS |
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This seems very odd indeed. The file /yask-master/build/kernel/yask_kernel.iso3dfd.avx2/gen/yask_stencil_code.hpp is created and then successfully used by a number of scripts. But then the compiler fails with the message Assuming you haven't changed anything, can you run |
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@chuckyount Hi, $ mpiicc -v $ ls -l /yask-master/build/kernel/yask_kernel.iso3dfd.avx2/gen |
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I just can't figure out what's going on. The file "/yask-master/build/kernel/yask_kernel.iso3dfd.avx2/gen/yask_stencil_code.hpp" exists and has ample read permissions according to your output above, but the compiler error says it cannot open this file. As far as I know, nobody else has had this issue. We need to figure out why the compiler cannot open the file. There will be a lot of output, but you can try running the following to help debug why the file cannot be opened: |
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@chuckyount |
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This run failed with "could not checkout FLEXlm license". Not related to the earlier problem, I assume. |
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@chuckyount |
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Can you try building with gcc using "make clean; make YK_CXX=gcc mpi=0 stencil=iso3dfd" just to see if it works? |
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@chuckyount |
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Sorry; try g++ specifically: "make clean; make YK_CXX=g++ mpi=0 stencil=iso3dfd" |
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@chuckyount it seems that it works! |
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Yes, it looks like it works with g++. You can also try clang++. Perhaps there was some issue with your installation of icc or Intel MPI. |
when i try: make clean; make stencil=iso3dfd
the following message occurred(i omit some of the message for it is really too much...):
make -C src/compiler YASK_OUTPUT_DIR=/yask-master default
make[1]: Entering directory 'yask-master/src/compiler'
Binary /yask-master/bin/yask_compiler.exe has been built.
make old-code-check
......
YASK -- Yet Another Stencil Kit
YASK Stencil Compiler Utility
Copyright (c) 2014-2019, Intel Corporation.
Version: 3.03.00
Stencil-solution name: iso3dfd
Stencil radius: 8
Stencil-solution description: iso3dfd radius 8
Output target: avx2
Num vars defined: 2
Num equations defined: 1
Var: p(t, x, y, z)
Var: v(x, y, z)
Step dimension: t
Domain dimension(s): x, y, z
Number of SIMD elements: 8
No explicitly-requested vector-folding.
Vector-fold dimension(s) and point-size(s): x=1 * y=8 * z=1
Cluster dimension(s) and multiplier(s): x=1 * y=1 * z=1
Cluster dimension(s) and point-size(s): x=1 * y=8 * z=1
No misc dimensions used
Processing 1 stencil equation(s)...
Analyzing for dependencies...
Finding transitive closure of dependencies...
Topologically ordering equations...
Partitioning 1 equation(s) into bundles...
Collapsing dependencies from equations and finding transitive closure...
Topologically ordering bundles...
Created 1 equation bundle(s):
equation-bundle 'stencil_bundle_0' w/o domain condition w/o step condition:
Contains 1 equation(s).
Updates the following var(s): p.
Stats across 1 equation-bundle(s):
Expression stats for scalar & vector equation-bundle(s):
84 node(s).
0 node pair(s).
52 var read(s).
1 var write(s).
61 FP math operation(s).
Expression stats after applying common subexpr elimination to scalar & vector equation-bundle(s):
83 node(s).
0 node pair(s).
51 var read(s).
1 var write(s).
61 FP math operation(s).
No changes after applying commutative recombination to scalar & vector equation-bundle(s).
No changes after applying common subexpr elimination to scalar & vector equation-bundle(s).
No changes after applying function pairing to scalar & vector equation-bundle(s).
Partitioning 1 bundle(s) into packs...
Collapsing dependencies from bundles and finding transitive closure...
Topologically ordering packs...
Created 1 equation bundle pack(s):
equation bundle-pack 'stencil_pack_0' w/o step condition:
Contains 1 bundle(s): stencil_bundle_0.
Updates the following var(s): p.
Constructing cluster of equations containing 1 vector(s)...
Stats across 1 equation-bundle(s):
Expression stats for cluster equation-bundle(s):
84 node(s).
0 node pair(s).
52 var read(s).
1 var write(s).
61 FP math operation(s).
Expression stats after applying common subexpr elimination to cluster equation-bundle(s):
83 node(s).
0 node pair(s).
51 var read(s).
1 var write(s).
61 FP math operation(s).
No changes after applying commutative recombination to cluster equation-bundle(s).
No changes after applying common subexpr elimination to cluster equation-bundle(s).
No changes after applying function pairing to cluster equation-bundle(s).
Generating 'avx2' output...
YASK Stencil Compiler: done.
/bin/sh: 1: gindent: not found
/bin/sh: 2: indent: not found
note: /yask-master/build/kernel/yask_kernel.iso3dfd.avx2/gen/yask_stencil_code.hpp is not properly indented because no indent program was found.
mkdir -p -v /yask-master/build/kernel/yask_kernel.iso3dfd.avx2/gen
perl /yask-master/utils/bin/gen_loops.pl -output /yask-master/build/kernel/yask_kernel.iso3dfd.avx2/gen/yask_rank_loops.hpp -ndims
awk '/NUM_STENCIL_DIMS/ {print $NF}' /yask-master/build/kernel/yask_kernel.iso3dfd.avx2/gen/yask_stencil_code.hpp-inVar rank_idxs " loop(1 .. N-1) { call(calc_region(bp)); }"info: generating scanning code for 4-D vars...
info: generating scan over dimensions 1, 2, 3...
note: cannot find [g]indent utility--output will be unformatted.
info: output in '/yask-master/build/kernel/yask_kernel.iso3dfd.avx2/gen/yask_rank_loops.hpp'.
mkdir -p -v /yask-master/build/kernel/yask_kernel.iso3dfd.avx2/gen
perl /yask-master/utils/bin/gen_loops.pl -output /yask-master/build/kernel/yask_kernel.iso3dfd.avx2/gen/yask_region_loops.hpp -ndims
awk '/NUM_STENCIL_DIMS/ {print $NF}' /yask-master/build/kernel/yask_kernel.iso3dfd.avx2/gen/yask_stencil_code.hpp-inVar region_idxs -ompConstruct 'omp parallel for schedule(dynamic,1) proc_bind(spread)' " omp loop(1 .. N-1) { call(calc_block(bp, region_shift_num, nphases, phase, rank_idxs)); }"info: generating scanning code for 4-D vars...
info: using OpenMP on following loop.
info: generating scan over dimensions 1, 2, 3...
note: cannot find [g]indent utility--output will be unformatted.
info: output in '/yask-master/build/kernel/yask_kernel.iso3dfd.avx2/gen/yask_region_loops.hpp'.
mkdir -p -v /yask-master/build/kernel/yask_kernel.iso3dfd.avx2/gen
perl /yask-master/utils/bin/gen_loops.pl -output /yask-master/build/kernel/yask_kernel.iso3dfd.avx2/gen/yask_block_loops.hpp -ndims
awk '/NUM_STENCIL_DIMS/ {print $NF}' /yask-master/build/kernel/yask_kernel.iso3dfd.avx2/gen/yask_stencil_code.hpp-inVar adj_block_idxs " loop(1 .. N-1) { call(calc_mini_block(region_thread_idx, bp, region_shift_num, nphases, phase, nshapes, shape, bridge_mask, rank_idxs, region_idxs, block_idxs)); }"info: generating scanning code for 4-D vars...
info: generating scan over dimensions 1, 2, 3...
note: cannot find [g]indent utility--output will be unformatted.
info: output in '/yask-master/build/kernel/yask_kernel.iso3dfd.avx2/gen/yask_block_loops.hpp'.
mkdir -p -v /yask-master/build/kernel/yask_kernel.iso3dfd.avx2/gen
perl /yask-master/utils/bin/gen_loops.pl -output /yask-master/build/kernel/yask_kernel.iso3dfd.avx2/gen/yask_mini_block_loops.hpp -ndims
awk '/NUM_STENCIL_DIMS/ {print $NF}' /yask-master/build/kernel/yask_kernel.iso3dfd.avx2/gen/yask_stencil_code.hpp-inVar adj_mb_idxs -ompConstruct 'omp for schedule(static,1) nowait' " omp loop(1 .. N-1) { call(CALC_SUB_BLOCK); }"info: generating scanning code for 4-D vars...
info: using OpenMP on following loop.
info: generating scan over dimensions 1, 2, 3...
note: cannot find [g]indent utility--output will be unformatted.
info: output in '/yask-master/build/kernel/yask_kernel.iso3dfd.avx2/gen/yask_mini_block_loops.hpp'.
......
compilation aborted for /yask-master/src/kernel/lib/factory.cpp (code 4)
Makefile:506: recipe for target '/yask-master/build/kernel/yask_kernel.iso3dfd.avx2/obj/factory.o' failed
make[1]: *** [/yask-master/build/kernel/yask_kernel.iso3dfd.avx2/obj/factory.o] Error 4
make[1]: Leaving directory '/yask-master/src/kernel'
Makefile:98: recipe for target 'default' failed
make: *** [default] Error 2
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