Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Special characters (in source data) causing problems with results pages #74

Closed
mlyne opened this issue Sep 10, 2012 · 3 comments
Closed
Assignees
Labels

Comments

@mlyne
Copy link
Contributor

mlyne commented Sep 10, 2012

Source: Flymine preview

Special character (�) - present in source data - breaks results page filtering.

Problem:
Flymine 'Interactions Experiment '
Externally curated molecular interaction network in Drosophila melanogaster.

contains field 'contact-comment' with non-ASCII characters
CNRS, Equipe Bioinformatique des r�seaux de r�gulation, Institut de Biologie du D�veloppement de Marseille-Luminy, 13288 Marseille Cedex 9 (http://www.ibdm.univ-mrs.fr/)

To reproduce:

<query name="" model="genomic" view="Gene.symbol Gene.interactions.details.confidenceText Gene.interactions.details.type Gene.interactions.details.role2 Gene.interactions.details.role1 Gene.interactions.details.confidence Gene.interactions.details.name Gene.interactions.details.experiment.name Gene.interactions.details.experiment.description Gene.interactions.details.experiment.comments.type Gene.interactions.details.experiment.comments.description" longDescription="" sortOrder="Gene.symbol asc">
  <constraint path="Gene.symbol" op="=" value="cdc2"/>
</query>

Column summary on 'Gene.interactions.details.experiment.comments.description' and apply filter on 'CNRS, Equipe Bioinformatique des... ' etc.

No rows are displayed but filtering on other values works fine.

@mlyne
Copy link
Contributor Author

mlyne commented Sep 10, 2012

XML didn't insert... [thanks Radek]

<query name="" model="genomic" view="Gene.symbol Gene.interactions.details.confidenceText Gene.interactions.details.type Gene.interactions.details.role2 Gene.interactions.details.role1 Gene.interactions.details.confidence Gene.interactions.details.name Gene.interactions.details.experiment.name Gene.interactions.details.experiment.description Gene.interactions.details.experiment.comments.type Gene.interactions.details.experiment.comments.description Gene.interactions.details.dataSets.name Gene.interactions.details.dataSets.url" longDescription="" sortOrder="Gene.symbol asc">
  <constraint path="Gene.symbol" op="=" value="cdc2"/>
</query>

@ghost ghost assigned alexkalderimis Sep 10, 2012
@julie-sullivan
Copy link
Member

Is this the same issue as #44?

@alexkalderimis
Copy link
Contributor

Seems to work with my favourite problematic author:

<query model="genomic" view="Author.name Author.publications.title" sortOrder="Author.name ASC" >
  <constraint path="Author.name" op="=" code="A" value="Zemano*" />
 </query>

@mlyne mlyne closed this as completed Feb 20, 2013
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
Projects
None yet
Development

No branches or pull requests

3 participants