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CHANGELOG.md

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Changelog

All notable changes to this project will be documented in this file.

The format is based on Keep a Changelog, and this project adheres to Semantic Versioning.

Unreleased

[0.8.1] - 2024-08-06

Changed

  • Set max matchms to 0.26.4
  • Set max scipy to 1.10.1

0.8.0 - 2022-01-06

Changed

  • Minor changes to make tests pass with new matchms versions (>=0.18.0). Should nearly always be backwards compatible though.
  • Now dependency requirement is set to matchms>=0.14.0

0.7.0 - 2022-10-01

Added

  • added spec2vec.serialization subpackage to import and export Word2Vec models to/from disk without Pickle (via import_model and export_model respectively) #80

Changed

  • bumped gensim version to >=4.2.0 in dependencies #84

Fixed

  • updated Code examples in documentation to recent changes in matchms.

0.6.0 - 2022-01-03

Added

  • Logging (replacing former print statements) including options to write logs to file #73
  • Now supports Python 3.9 (including CI test runs) #40

Changed

  • missing words percentage above the allowed_missing_percentage no longer causes an expection but only leads to raising a warning #73
  • default setting for allowed_missing_percentage to 10.0 to be less strict on model coverage #72

Fixed

  • Can now also handle spectra in which no peak is known to the model (will return warning + empty vector) #73

0.5.0 - 2021-06-18

Changed

  • Spec2Vec is now using gensim >= 4.0.0 #62

0.4.0 - 2021-02-10

Changed

  • refactored Spec2Vec to now accept Spectrum or SpectrumDocument as input #51

Fixed

  • updated and fixed code examples #51
  • updated and fixed attribute typing #51

0.3.4 - 2021-02-10

Changed

  • update required numba version to >=0.51 to avoid issues between numba and numpy #55

0.3.3 - 2021-02-09

Added

  • Metadata getter method for SpectrumDocument #50
  • Implement is_symmetric=True option for Spec2Vec.matrix method #53

Changed

  • Change default for n_decimals parameter from 1 to 2 #50

0.3.2 - 2020-12-03

Changed

  • Add optional progress bar for spec2vec.matrix() calculations (default is False) #43

0.3.1 - 2020-09-23

Changed

  • Implement faster, numba-based cosine similarity function #29

0.3.0 - 2020-09-16

Added

  • Support for Python 3.8 #35

Changed

  • Refactored Spec2Vec class to provide .pair() and .matrix() methods #35

Removed

  • Spec2VecParallel (is now included as Spec2Vec.matrix()) #35

0.2.0 - 2020-06-18

Added

  • Wrapper for training a gensim word2vec model #13
  • Basic logger for word2vec model training #11

Changed

  • Extend spec2vec similarity calculation to handle missing words #9
  • Extend documentation and given code examples #15
  • Updated the integration test to work with matchms 0.4.0 #7

0.1.0 - 2020-06-02

Added

  • Matchms as dependency #4
  • Bump2version config

Changed

  • Splitted spec2vec from [matchms]. See (https://github.com/matchms/matchms) #1 #4
    • Updated packaging related configuration
    • Update the GH Actions workflows
    • Updated the documentation
    • Updated the badges
    • Updated the integration and unit tests
    • Zenodo metadata

Fixed

Removed

  • Fossa configuration
  • Flowchart