ionchefplantemplate.rst

Ion Chef Plan Template Resource

Resource URL http://mytorrentserver/rundb/api/v1/ionchefplantemplate/
Schema URL http://mytorrentserver/rundb/api/v1/ionchefplantemplate/schema/

Resource Fields

field	help text	default	nullable	readonly	blank	unique	type
planDisplayedName	Unicode string data. Ex: "Hello World"	n/a	true	false	false	false	string
------------------------------------	--------------------------------------------------------------------------------------------------	-------	--------	--------	-----	------	--------
autoAnalyze	Boolean data. Ex: True	n/a	false	false	false	false	boolean
------------------------------------	--------------------------------------------------------------------------------------------------	-------	--------	--------	-----	------	--------
templatingKitBarcode	Unicode string data. Ex: "Hello World"	n/a	true	false	false	false	string
------------------------------------	--------------------------------------------------------------------------------------------------	-------	--------	--------	-----	------	--------
preAnalysis	Boolean data. Ex: True	true	false	false	true	false	boolean
------------------------------------	--------------------------------------------------------------------------------------------------	-------	--------	--------	-----	------	--------
applicationGroup	A single related resource. Can be either a URI or set of nested resource data.	n/a	true	false	true	false	related
------------------------------------	--------------------------------------------------------------------------------------------------	-------	--------	--------	-----	------	--------
platform	Unicode string data. Ex: "Hello World"	n/a	true	false	true	false	string
------------------------------------categories	--------------------------------------------------------------------------------------------------Unicode string data. Ex: "Hello World"		--------true	--------false	-----false	------false	--------string
------------------------------------	--------------------------------------------------------------------------------------------------	-------	--------	--------	-----	------	--------
planPGM	Unicode string data. Ex: "Hello World"	n/a	true	false	false	false	string
------------------------------------	--------------------------------------------------------------------------------------------------	-------	--------	--------	-----	------	--------
libkit	Unicode string data. Ex: "Hello World"	n/a	true	false	false	false	string
------------------------------------	--------------------------------------------------------------------------------------------------	-------	--------	--------	-----	------	--------
projects	Many related resources. Can be either a list of URIs or list of individually nested resource data.	n/a	true	false	true	false	related
------------------------------------notes	--------------------------------------------------------------------------------------------------Unicode string data. Ex: "Hello World"		--------true	--------false	-----true	------false	--------string
------------------------------------sequencekitname	--------------------------------------------------------------------------------------------------Unicode string data. Ex: "Hello World"		--------true	--------false	-----true	------false	--------string
------------------------------------base_recalibration_mode	--------------------------------------------------------------------------------------------------Unicode string data. Ex: "Hello World"		--------true	--------false	-----true	------false	--------string
------------------------------------	--------------------------------------------------------------------------------------------------	-------	--------	--------	-----	------	--------
storageHost	Unicode string data. Ex: "Hello World"	n/a	true	false	false	false	string
------------------------------------expName	--------------------------------------------------------------------------------------------------Unicode string data. Ex: "Hello World"		--------false	--------false	-----true	------false	--------string
------------------------------------	--------------------------------------------------------------------------------------------------	-------	--------	--------	-----	------	--------
cycles	Integer data. Ex: 2673	n/a	true	false	false	false	integer
------------------------------------	--------------------------------------------------------------------------------------------------	-------	--------	--------	-----	------	--------
isReverseRun	Boolean data. Ex: True	false	false	false	true	false	boolean
------------------------------------	--------------------------------------------------------------------------------------------------	-------	--------	--------	-----	------	--------
storage_options	Unicode string data. Ex: "Hello World"	A	false	false	false	false	string
------------------------------------chipType	--------------------------------------------------------------------------------------------------Unicode string data. Ex: "Hello World"		--------false	--------false	-----false	------false	--------string
------------------------------------library	--------------------------------------------------------------------------------------------------Unicode string data. Ex: "Hello World"		--------true	--------false	-----true	------false	--------string
------------------------------------reverselibrarykey	--------------------------------------------------------------------------------------------------Unicode string data. Ex: "Hello World"		--------false	--------true	-----false	------false	--------string
------------------------------------	--------------------------------------------------------------------------------------------------	-------	--------	--------	-----	------	--------
planName	Unicode string data. Ex: "Hello World"	n/a	true	false	false	false	string
------------------------------------	--------------------------------------------------------------------------------------------------	-------	--------	--------	-----	------	--------
seqKitBarcode	Unicode string data. Ex: "Hello World"	n/a	true	false	false	false	string
------------------------------------barcodeId	--------------------------------------------------------------------------------------------------Unicode string data. Ex: "Hello World"		--------true	--------false	-----true	------false	--------string
------------------------------------	--------------------------------------------------------------------------------------------------	-------	--------	--------	-----	------	--------
isPlanGroup	Boolean data. Ex: True	false	false	false	true	false	boolean
------------------------------------	--------------------------------------------------------------------------------------------------	-------	--------	--------	-----	------	--------
realign	Boolean data. Ex: True	n/a	false	false	false	false	boolean
------------------------------------	--------------------------------------------------------------------------------------------------	-------	--------	--------	-----	------	--------
sampleGroupingName	Unicode string data. Ex: "Hello World"	n/a	true	true	true	false	string
------------------------------------	--------------------------------------------------------------------------------------------------	-------	--------	--------	-----	------	--------
experiment	A single related resource. Can be either a URI or set of nested resource data.	n/a	true	false	true	false	related
------------------------------------bedfile	--------------------------------------------------------------------------------------------------Unicode string data. Ex: "Hello World"		--------false	--------false	-----true	------false	--------string
------------------------------------	--------------------------------------------------------------------------------------------------	-------	--------	--------	-----	------	--------
applicationCategoryDisplayedName	Unicode string data. Ex: "Hello World"	n/a	true	true	true	false	string
------------------------------------	--------------------------------------------------------------------------------------------------	-------	--------	--------	-----	------	--------
isReusable	Boolean data. Ex: True	false	false	false	true	false	boolean
------------------------------------	--------------------------------------------------------------------------------------------------	-------	--------	--------	-----	------	--------
isDuplicateReads	Boolean data. Ex: True	n/a	false	false	false	false	boolean
------------------------------------	--------------------------------------------------------------------------------------------------	-------	--------	--------	-----	------	--------
sampleSets	Many related resources. Can be either a list of URIs or list of individually nested resource data.	n/a	true	false	true	false	related
------------------------------------librarykitname	--------------------------------------------------------------------------------------------------Unicode string data. Ex: "Hello World"		--------true	--------false	-----true	------false	--------string
------------------------------------sseBedFile	--------------------------------------------------------------------------------------------------Unicode string data. Ex: "Hello World"		--------false	--------false	-----true	------false	--------string
------------------------------------	--------------------------------------------------------------------------------------------------	-------	--------	--------	-----	------	--------
adapter	Unicode string data. Ex: "Hello World"	n/a	true	false	false	false	string
------------------------------------	--------------------------------------------------------------------------------------------------	-------	--------	--------	-----	------	--------
earlyDatFileDeletion	Boolean data. Ex: True	false	false	true	false	false	boolean
------------------------------------	--------------------------------------------------------------------------------------------------	-------	--------	--------	-----	------	--------
parentPlan	Unicode string data. Ex: "Hello World"	None	false	false	true	false	string
------------------------------------origin	--------------------------------------------------------------------------------------------------Unicode string data. Ex: "Hello World"		--------true	--------false	-----false	------false	--------string
------------------------------------forward3primeadapter	--------------------------------------------------------------------------------------------------Unicode string data. Ex: "Hello World"		--------true	--------false	-----true	------false	--------string
------------------------------------	--------------------------------------------------------------------------------------------------	-------	--------	--------	-----	------	--------
samplePrepKitName	Unicode string data. Ex: "Hello World"	n/a	true	false	false	false	string
------------------------------------	--------------------------------------------------------------------------------------------------	-------	--------	--------	-----	------	--------
applicationGroupDisplayedName	Unicode string data. Ex: "Hello World"	n/a	true	true	true	false	string
------------------------------------	--------------------------------------------------------------------------------------------------	-------	--------	--------	-----	------	--------
metaData	Unicode string data. Ex: "Hello World"	{}	false	false	true	false	string
------------------------------------	--------------------------------------------------------------------------------------------------	-------	--------	--------	-----	------	--------
isFavorite	Boolean data. Ex: True	false	false	false	true	false	boolean
------------------------------------	--------------------------------------------------------------------------------------------------	-------	--------	--------	-----	------	--------
qcValues	Many related resources. Can be either a list of URIs or list of individually nested resource data.	n/a	true	false	true	false	related
------------------------------------planStatus	--------------------------------------------------------------------------------------------------Unicode string data. Ex: "Hello World"		--------false	--------false	-----true	------false	--------string
------------------------------------	--------------------------------------------------------------------------------------------------	-------	--------	--------	-----	------	--------
templatingKitName	Unicode string data. Ex: "Hello World"	n/a	true	false	false	false	string
------------------------------------	--------------------------------------------------------------------------------------------------	-------	--------	--------	-----	------	--------
runType	Unicode string data. Ex: "Hello World"	GENS	false	false	false	false	string
------------------------------------	--------------------------------------------------------------------------------------------------	-------	--------	--------	-----	------	--------
username	Unicode string data. Ex: "Hello World"	n/a	true	false	false	false	string
------------------------------------	--------------------------------------------------------------------------------------------------	-------	--------	--------	-----	------	--------
planShortID	Unicode string data. Ex: "Hello World"	n/a	true	false	false	false	string
------------------------------------sampleDisplayedName	--------------------------------------------------------------------------------------------------Unicode string data. Ex: "Hello World"		--------true	--------false	-----true	------false	--------string
------------------------------------	--------------------------------------------------------------------------------------------------	-------	--------	--------	-----	------	--------
controlSequencekitname	Unicode string data. Ex: "Hello World"	n/a	true	false	false	false	string
------------------------------------tfKey	--------------------------------------------------------------------------------------------------Unicode string data. Ex: "Hello World"		--------false	--------false	-----true	------false	--------string
------------------------------------templatingSize	--------------------------------------------------------------------------------------------------Unicode string data. Ex: "Hello World"		--------true	--------false	-----false	------false	--------string
------------------------------------	--------------------------------------------------------------------------------------------------	-------	--------	--------	-----	------	--------
childPlans	A list of data. Ex: ['abc', 26.73, 8]	[]	false	false	false	false	list
------------------------------------	--------------------------------------------------------------------------------------------------	-------	--------	--------	-----	------	--------
pairedEndLibraryAdapterName	Unicode string data. Ex: "Hello World"	n/a	true	false	false	false	string
------------------------------------runMode	--------------------------------------------------------------------------------------------------Unicode string data. Ex: "Hello World"		--------false	--------false	-----true	------false	--------string
------------------------------------irworkflow	--------------------------------------------------------------------------------------------------Unicode string data. Ex: "Hello World"		--------false	--------false	-----true	------false	--------string
------------------------------------	--------------------------------------------------------------------------------------------------	-------	--------	--------	-----	------	--------
planExecuted	Boolean data. Ex: True	false	false	false	true	false	boolean
------------------------------------	--------------------------------------------------------------------------------------------------	-------	--------	--------	-----	------	--------
project	Unicode string data. Ex: "Hello World"	n/a	false	true	true	false	string
------------------------------------	--------------------------------------------------------------------------------------------------	-------	--------	--------	-----	------	--------
usePostBeadfind	Boolean data. Ex: True	true	false	false	true	false	boolean
------------------------------------	--------------------------------------------------------------------------------------------------	-------	--------	--------	-----	------	--------
libraryReadLength	Integer data. Ex: 2673	0	false	false	false	false	integer
------------------------------------	--------------------------------------------------------------------------------------------------	-------	--------	--------	-----	------	--------
runname	Unicode string data. Ex: "Hello World"	n/a	true	false	false	false	string
------------------------------------	--------------------------------------------------------------------------------------------------	-------	--------	--------	-----	------	--------
chefInfo	A dictionary of data. Ex: {'price': 26.73, 'name': 'Daniel'}	{}	false	false	false	false	dict
------------------------------------	--------------------------------------------------------------------------------------------------	-------	--------	--------	-----	------	--------
planGUID	Unicode string data. Ex: "Hello World"	n/a	true	false	false	false	string
------------------------------------	--------------------------------------------------------------------------------------------------	-------	--------	--------	-----	------	--------
sampleTubeLabel	Unicode string data. Ex: "Hello World"	n/a	true	false	false	false	string
------------------------------------samplePrepProtocol	--------------------------------------------------------------------------------------------------Unicode string data. Ex: "Hello World"		--------true	--------false	-----false	------false	--------string
------------------------------------sample	--------------------------------------------------------------------------------------------------Unicode string data. Ex: "Hello World"		--------true	--------false	-----true	------false	--------string
------------------------------------	--------------------------------------------------------------------------------------------------	-------	--------	--------	-----	------	--------
planExecutedDate	A date & time as a string. Ex: "2010-11-10T03:07:43"	n/a	true	false	false	false	datetime
------------------------------------	--------------------------------------------------------------------------------------------------	-------	--------	--------	-----	------	--------
reverse_primer	Unicode string data. Ex: "Hello World"	n/a	true	false	false	false	string
------------------------------------id	--------------------------------------------------------------------------------------------------Integer data. Ex: 2673		--------false	--------false	-----true	------true	--------integer
------------------------------------barcodedSamples	--------------------------------------------------------------------------------------------------Unicode string data. Ex: "Hello World"		--------true	--------false	-----true	------false	--------string
------------------------------------regionfile	--------------------------------------------------------------------------------------------------Unicode string data. Ex: "Hello World"		--------false	--------false	-----true	------false	--------string
------------------------------------selectedPlugins	--------------------------------------------------------------------------------------------------Unicode string data. Ex: "Hello World"		--------true	--------false	-----true	------false	--------string
------------------------------------	--------------------------------------------------------------------------------------------------	-------	--------	--------	-----	------	--------
isSystemDefault	Boolean data. Ex: True	false	false	false	true	false	boolean
------------------------------------	--------------------------------------------------------------------------------------------------	-------	--------	--------	-----	------	--------
autoName	Unicode string data. Ex: "Hello World"	n/a	true	false	false	false	string
------------------------------------libraryKey	--------------------------------------------------------------------------------------------------Unicode string data. Ex: "Hello World"		--------false	--------false	-----true	------false	--------string
------------------------------------	--------------------------------------------------------------------------------------------------	-------	--------	--------	-----	------	--------
flows	Integer data. Ex: 2673	0	false	false	false	false	integer
------------------------------------	--------------------------------------------------------------------------------------------------	-------	--------	--------	-----	------	--------
date	A date & time as a string. Ex: "2010-11-10T03:07:43"	n/a	true	false	false	false	datetime
------------------------------------	--------------------------------------------------------------------------------------------------	-------	--------	--------	-----	------	--------
isSystem	Boolean data. Ex: True	false	false	false	true	false	boolean
------------------------------------variantfrequency	--------------------------------------------------------------------------------------------------Unicode string data. Ex: "Hello World"		--------false	--------true	-----false	------false	--------string
------------------------------------	--------------------------------------------------------------------------------------------------	-------	--------	--------	-----	------	--------
sampleSetDisplayedName	Unicode string data. Ex: "Hello World"	n/a	true	true	true	false	string
------------------------------------flowsInOrder	--------------------------------------------------------------------------------------------------Unicode string data. Ex: "Hello World"		--------true	--------false	-----true	------false	--------string
------------------------------------libraryPrepType	--------------------------------------------------------------------------------------------------Unicode string data. Ex: "Hello World"		--------true	--------true	-----true	------false	--------string
------------------------------------	--------------------------------------------------------------------------------------------------	-------	--------	--------	-----	------	--------
sampleGrouping	A single related resource. Can be either a URI or set of nested resource data.	n/a	true	false	true	false	related
------------------------------------chipBarcode	--------------------------------------------------------------------------------------------------Unicode string data. Ex: "Hello World"		--------false	--------false	-----false	------false	--------string
------------------------------------	--------------------------------------------------------------------------------------------------	-------	--------	--------	-----	------	--------
usePreBeadfind	Boolean data. Ex: True	true	false	false	true	false	boolean
------------------------------------	--------------------------------------------------------------------------------------------------	-------	--------	--------	-----	------	--------
resource_uri	Unicode string data. Ex: "Hello World"	n/a	false	true	false	false	string
------------------------------------libraryPrepTypeDisplayedName	--------------------------------------------------------------------------------------------------Unicode string data. Ex: "Hello World"		--------true	--------true	-----true	------false	--------string
------------------------------------reverse3primeadapter	--------------------------------------------------------------------------------------------------Unicode string data. Ex: "Hello World"		--------false	--------true	-----false	------false	--------string

Example Response

{
    "meta": {
        "previous": null, 
        "total_count": 46, 
        "offset": 0, 
        "limit": 1, 
        "next": "/rundb/api/v1/ionchefplantemplate/?offset=1&limit=1&format=json"
    }, 
    "objects": [
        {
            "planDisplayedName": "Oncomine TagSeq Liquid Biopsy", 
            "autoAnalyze": true, 
            "templatingKitBarcode": null, 
            "preAnalysis": true, 
            "thumbnailanalysisargs": "", 
            "applicationGroup": "/rundb/api/v1/applicationgroup/7/", 
            "platform": "S5", 
            "categories": "", 
            "planPGM": "", 
            "prebasecallerargs": "", 
            "alignmentargs": "", 
            "thumbnailbasecallerargs": "", 
            "libkit": null, 
            "projects": [], 
            "notes": "", 
            "sequencekitname": "Ion S5 Sequencing Kit", 
            "base_recalibration_mode": "standard_recal", 
            "storageHost": null, 
            "expName": "", 
            "thumbnailionstatsargs": "", 
            "cycles": null, 
            "isReverseRun": false, 
            "storage_options": "A", 
            "thumbnailalignmentargs": "", 
            "chipType": "530", 
            "library": "hg19", 
            "runMode": "single", 
            "planName": "Oncomine_TagSeq_Liquid_Biopsy", 
            "seqKitBarcode": null, 
            "barcodeId": "TagSequencing", 
            "isPlanGroup": false, 
            "realign": false, 
            "sampleGroupingName": "Self", 
            "experiment": "/rundb/api/v1/experiment/94/", 
            "bedfile": "", 
            "applicationCategoryDisplayedName": "", 
            "isReusable": true, 
            "isDuplicateReads": false, 
            "sampleSets": [], 
            "thumbnailbeadfindargs": "", 
            "librarykitname": "Oncomine cfDNA Assay", 
            "sseBedFile": "", 
            "adapter": null, 
            "basecallerargs": "", 
            "earlyDatFileDeletion": false, 
            "parentPlan": null, 
            "origin": "|5.4.0.RC3", 
            "forward3primeadapter": "ATCACCGACTGCCCATAGAGAGGCTGAGAC", 
            "planStatus": "inactive", 
            "samplePrepKitName": null, 
            "applicationGroupDisplayedName": "Oncology - Liquid Biopsy", 
            "metaData": {}, 
            "isFavorite": false, 
            "qcValues": [
                {
                    "threshold": 30, 
                    "plannedExperiment": "/rundb/api/v1/plannedexperiment/102/", 
                    "id": 306, 
                    "qcType": {
                        "description": "", 
                        "minThreshold": 0, 
                        "maxThreshold": 100, 
                        "defaultThreshold": 30, 
                        "qcName": "Usable Sequence (%)", 
                        "id": 3, 
                        "resource_uri": "/rundb/api/v1/qctype/3/"
                    }, 
                    "resource_uri": "/rundb/api/v1/plannedexperimentqc/306/"
                }, 
                {
                    "threshold": 30, 
                    "plannedExperiment": "/rundb/api/v1/plannedexperiment/102/", 
                    "id": 305, 
                    "qcType": {
                        "description": "", 
                        "minThreshold": 1, 
                        "maxThreshold": 100, 
                        "defaultThreshold": 30, 
                        "qcName": "Key Signal (1-100)", 
                        "id": 2, 
                        "resource_uri": "/rundb/api/v1/qctype/2/"
                    }, 
                    "resource_uri": "/rundb/api/v1/plannedexperimentqc/305/"
                }, 
                {
                    "threshold": 30, 
                    "plannedExperiment": "/rundb/api/v1/plannedexperiment/102/", 
                    "id": 304, 
                    "qcType": {
                        "description": "", 
                        "minThreshold": 0, 
                        "maxThreshold": 100, 
                        "defaultThreshold": 30, 
                        "qcName": "Bead Loading (%)", 
                        "id": 1, 
                        "resource_uri": "/rundb/api/v1/qctype/1/"
                    }, 
                    "resource_uri": "/rundb/api/v1/plannedexperimentqc/304/"
                }
            ], 
            "analysisargs": "", 
            "thumbnailcalibrateargs": "", 
            "templatingKitName": "Ion Chef S530 V1", 
            "runType": "TAG_SEQUENCING", 
            "username": null, 
            "planShortID": "9HMOG", 
            "sampleDisplayedName": "", 
            "prethumbnailbasecallerargs": "", 
            "controlSequencekitname": null, 
            "tfKey": "ATCG", 
            "templatingSize": "", 
            "childPlans": [], 
            "pairedEndLibraryAdapterName": null, 
            "reverselibrarykey": "", 
            "irworkflow": "", 
            "planExecuted": false, 
            "project": "", 
            "usePostBeadfind": false, 
            "libraryReadLength": 200, 
            "runname": null, 
            "chefInfo": {}, 
            "planGUID": "f71a0fd1-88a1-4943-88f4-cbf997afe25d", 
            "sampleTubeLabel": null, 
            "ionstatsargs": "", 
            "samplePrepProtocol": "", 
            "sample": "", 
            "planExecutedDate": null, 
            "reverse_primer": null, 
            "id": 102, 
            "barcodedSamples": {}, 
            "custom_args": false, 
            "regionfile": "", 
            "selectedPlugins": {}, 
            "beadfindargs": "", 
            "isSystemDefault": false, 
            "autoName": null, 
            "libraryKey": "TCAG", 
            "flows": 500, 
            "date": "2017-04-10T04:56:32.000003+00:00", 
            "isSystem": true, 
            "variantfrequency": "", 
            "sampleSetDisplayedName": "", 
            "calibrateargs": "", 
            "flowsInOrder": "", 
            "libraryPrepType": "", 
            "sampleGrouping": "/rundb/api/v1/samplegrouptype_cv/2/", 
            "chipBarcode": "", 
            "usePreBeadfind": true, 
            "resource_uri": "/rundb/api/v1/ionchefplantemplate/102/", 
            "libraryPrepTypeDisplayedName": "", 
            "reverse3primeadapter": ""
        }
    ]
}

Allowed HTTP methods

• get
• post
• put
• delete
• patch