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FROM centos:5
ADD https://dl.fedoraproject.org/pub/epel/epel-release-latest-5.noarch.rpm /
RUN rpm -Uvh epel-release-latest-5.noarch.rpm
COPY yum.repos.d/* /etc/yum.repos.d/
ADD http://de.iplantcollaborative.org/dl/d/D293B8D0-00E6-4394-962F-E1B761B3992E/R-RM2-0.0-4.el5.noarch.rpm /rpms/
ADD http://de.iplantcollaborative.org/dl/d/003F9900-6F84-4C51-82C2-0DDF4BE56F36/R-biglm-0.4-1.el5.1.x86_64.rpm /rpms/
ADD http://de.iplantcollaborative.org/dl/d/2E0A5AB2-13CA-477F-8DAB-5ACDF249A2C5/R-DBI-0.2.5-3.el5.noarch.rpm /rpms/
ADD http://de.iplantcollaborative.org/dl/d/9A5F7DB7-B766-4CBA-8714-4E5697CB0BBE/R-RScaLAPACK-0.5.1-10.el5.x86_64.rpm /rpms/
ADD http://de.iplantcollaborative.org/dl/d/DC4FAAD6-4EA4-4BCE-B910-CE10D90625B8/R-core-2.15.2-1.el5.x86_64.rpm /rpms/
ADD http://de.iplantcollaborative.org/dl/d/598A732F-E87D-4F5F-9DB4-9E33B2B8C185/R-hdf5-1.6.9-1.el5.x86_64.rpm /rpms/
ADD http://de.iplantcollaborative.org/dl/d/80617FF1-3D18-4027-9890-30EBAEBFD761/R-lmtest-0.9.29-1.el5.x86_64.rpm /rpms/
ADD http://de.iplantcollaborative.org/dl/d/EA03BF40-48F8-46AD-B6B6-FEA42104D011/R-car-1.2-16.1.el5.noarch.rpm /rpms/
ADD http://de.iplantcollaborative.org/dl/d/1FA9033C-850C-4F61-891B-F45CAF604C5F/R-multcomp-0.993-1.el5.noarch.rpm /rpms/
ADD http://de.iplantcollaborative.org/dl/d/8AEC7825-7874-4CA6-B8E6-EA26657082CE/R-msm-1.1-1.el5.x86_64.rpm /rpms/
ADD http://de.iplantcollaborative.org/dl/d/91D9AB23-5570-4B91-B02B-51364A6A9324/R-mvtnorm-0.9.9991-1.el5.x86_64.rpm /rpms/
ADD http://de.iplantcollaborative.org/dl/d/F008359B-1A10-4BD9-B9C2-3BC12358C6F2/R-systemfit-0.8-6.el5.noarch.rpm /rpms/
ADD http://de.iplantcollaborative.org/dl/d/B52E39E7-5239-476C-8F52-BE83375AC975/R-nws-1.7.0.1-3.el5.noarch.rpm /rpms/
ADD http://de.iplantcollaborative.org/dl/d/16BA1CD4-3D6B-46FA-A103-08CC2D818C76/R-zoo-1.7.6-2.el5.x86_64.rpm /rpms/
ADD http://de.iplantcollaborative.org/dl/d/D4DA247A-014A-479D-BD7C-9330A9A6B580/R-qtl-1.29.2-1.el5.x86_64.rpm /rpms/
ADD http://de.iplantcollaborative.org/dl/d/3C167066-B14E-4B82-A297-456A7E43D274/libRmath-devel-2.15.2-1.el5.x86_64.rpm /rpms/
ADD http://de.iplantcollaborative.org/dl/d/6C4FAA1C-FE02-4EEC-99FB-7B37049CD657/R-2.15.2-1.el5.x86_64.rpm /rpms/
ADD http://de.iplantcollaborative.org/dl/d/A967C202-D23F-4369-9766-3448336A19F8/R-devel-2.15.2-1.el5.x86_64.rpm /rpms/
ADD http://de.iplantcollaborative.org/dl/d/D172302A-8988-468C-B162-0B3F2E158657/libRmath-2.15.2-1.el5.x86_64.rpm /rpms/
ADD http://de.iplantcollaborative.org/dl/d/4A092F95-39AC-4C68-B3DA-916E7228CF78/R-library.tar.gz /R-library.tar.gz
ADD http://de.iplantcollaborative.org/dl/d/7DFDA524-3073-4A4C-9D2E-A705EFF62802/python24-libs.tar.gz /
ADD http://de.iplantcollaborative.org/dl/d/D69F7547-BD83-4FBB-A84B-C2769B0205C8/python26-libs.tar.gz /
ADD http://de.iplantcollaborative.org/dl/d/88EFCA72-091C-4DD8-8FF9-C2588CBDA1F4/BioPerl-1.6.1.tar.gz /
ADD http://de.iplantcollaborative.org/dl/d/71537FC1-6207-48FF-9583-2A7FDC3655F6/perl5-libs.tar.gz /
RUN yum update -y && yum install -y \
a2ps \
acl \
acpid \
alacarte \
alsa-lib \
alsa-lib-devel \
alsa-utils \
amtu \
anacron \
antlr \
apr \
apr-util \
aspell \
aspell-en \
at \
atk \
atk-devel \
atlas \
at-spi \
attr \
audiofile \
audiofile-devel \
audit \
audit-libs \
audit-libs-python \
authconfig \
authconfig-gtk \
autoconf \
autofs \
automake \
automake14 \
automake15 \
automake16 \
automake17 \
avahi \
avahi-compat-libdns_sd \
avahi-glib \
basesystem \
bash \
bc \
bind-libs \
bind-utils \
binutils \
binutils220 \
bison \
bitmap-fonts \
bitstream-vera-fonts \
blacs \
blacs-devel \
blas \
blas-devel \
blt \
bluez-gnome \
bluez-libs \
bluez-utils \
boost \
boost-devel \
bridge-utils \
brlapi \
bsf \
bsh \
bwidget \
byacc \
bzip2 \
bzip2-devel \
bzip2-libs \
cadaver \
cairo \
cairo-devel \
ccid \
cdda2wav \
cdparanoia \
cdparanoia-libs \
cdrdao \
cdrecord \
centos-release \
centos-release-notes \
cfitsio \
checkpolicy \
chkconfig \
chkfontpath \
compat-gcc-34 \
compat-gcc-34-g77 \
compat-libf2c-34 \
compat-libstdc++-33 \
comps-extras \
conman \
control-center \
coolkey \
coolkey-devel \
coreutils \
cpio \
cpp \
cpuspeed \
cracklib \
cracklib-dicts \
crash \
crontabs \
cryptsetup-luks \
cscope \
ctags \
cups \
cups-libs \
curl \
curl-devel \
cvs \
cyrus-sasl \
cyrus-sasl-devel \
cyrus-sasl-lib \
cyrus-sasl-md5 \
cyrus-sasl-plain \
db4 \
db4-devel \
dbus \
dbus-devel \
dbus-glib \
dbus-glib-devel \
dbus-libs \
dbus-python \
dbus-x11 \
dcraw \
dejavu-lgc-fonts \
denyhosts \
desktop-backgrounds-basic \
desktop-file-utils \
desktop-printing \
dev86 \
device-mapper \
device-mapper-event \
device-mapper-multipath \
dhclient \
dhcpv6-client \
dialog \
diffstat \
diffutils \
dmidecode \
dmraid \
dmraid-events \
dnsmasq \
docbook-dtds \
dogtail \
dos2unix \
dosfstools \
doxygen \
dump \
dvd+rw-tools \
e2fsprogs \
e2fsprogs-devel \
e2fsprogs-libs \
e4fsprogs-libs \
ebtables \
ecryptfs-utils \
ed \
eel2 \
eject \
ekiga \
elfutils \
elfutils-libelf \
elfutils-libelf-devel \
elfutils-libelf-devel-static \
elfutils-libs \
elinks \
enscript \
eog \
epel-release \
esc \
esound \
esound-devel \
ethtool \
evince \
evolution \
evolution-connector \
evolution-data-server \
evolution-webcal \
expat \
expat-devel \
expect \
fbset \
fetchmail \
file \
file-roller \
filesystem \
findutils \
finger \
fipscheck \
fipscheck-lib \
firefox \
flac \
flex \
fontconfig \
fontconfig-devel \
foomatic \
fping \
freetype \
freetype-devel \
ftp \
gail \
gamin \
gamin-python \
gawk \
gcalctool \
gcc \
gcc44 \
gcc-c++ \
gcc-gfortran \
GConf2 \
GConf2-devel \
gd \
gdb \
gdbm \
gdbm-devel \
gd-devel \
gdm \
gedit \
geos \
gettext \
ghostscript \
ghostscript-devel \
ghostscript-fonts \
giflib \
gimp \
gimp-data-extras \
gimp-help \
gimp-libs \
gimp-print \
gimp-print-plugin \
gimp-print-utils \
gjdoc \
glib2 \
glib2-devel \
glibc \
glibc-common \
glibc-devel \
glibc-headers \
glx-utils \
gmp \
gmp-devel \
gnome-applets \
gnome-audio \
gnome-backgrounds \
gnome-desktop \
gnome-doc-utils \
gnome-games \
gnome-icon-theme \
gnome-keyring \
gnome-keyring-devel \
gnome-mag \
gnome-media \
gnome-menus \
gnome-mime-data \
gnome-mount \
gnome-netstatus \
gnome-panel \
gnome-pilot \
gnome-power-manager \
gnome-python2 \
gnome-python2-applet \
gnome-python2-bonobo \
gnome-python2-canvas \
gnome-python2-desktop \
gnome-python2-extras \
gnome-python2-gconf \
gnome-python2-gnomeprint \
gnome-python2-gnomevfs \
gnome-python2-gtksourceview \
gnome-python2-libegg \
gnome-screensaver \
gnome-session \
gnome-speech \
gnome-spell \
gnome-system-monitor \
gnome-terminal \
gnome-themes \
gnome-user-docs \
gnome-user-share \
gnome-utils \
gnome-vfs2 \
gnome-vfs2-devel \
gnome-vfs2-smb \
gnome-volume-manager \
gnupg \
gnutls \
gok \
gpg-pubkey \
gphoto2 \
gpm \
gpm-devel \
graphviz \
graphviz-devel \
grep \
groff \
grub \
gsl \
gsl-devel \
gstreamer \
gstreamer-plugins-base \
gstreamer-plugins-good \
gstreamer-tools \
gthumb \
gtk2 \
gtk2-devel \
gtk2-engines \
gtkhtml2 \
gtkhtml3 \
gtksourceview \
gucharmap \
guile \
gzip \
hal \
hal-cups-utils \
hal-devel \
hal-gnome \
hdf5 \
hdparm \
hesiod \
hesiod-devel \
hicolor-icon-theme \
hmaccalc \
hpijs \
hpijs3 \
hplip \
hplip3 \
hplip3-common \
hplip3-libs \
hsqldb \
htmlview \
htop \
httpd \
hwdata \
ifd-egate \
ImageMagick \
ImageMagick-devel \
imake \
im-chooser \
indent \
info \
initscripts \
iproute \
ipsec-tools \
iptables \
iptables-ipv6 \
iputils \
irda-utils \
irqbalance \
iscsi-initiator-utils \
isdn4k-utils \
iso-codes \
itcl \
itk \
iwidgets \
jasper-libs \
java-1.4.2-gcj-compat \
java-1.6.0-openjdk \
java-1.7.0-openjdk \
java-1.7.0-openjdk-devel \
jdk \
jline \
joystick \
jpackage-utils \
js \
jwhois \
kbd \
kernel \
kernel-devel \
kernel-headers \
keyutils \
keyutils-libs \
keyutils-libs-devel \
kpartx \
krb5-auth-dialog \
krb5-devel \
krb5-libs \
krb5-workstation \
ksh \
kudzu \
kudzu-devel \
lam \
lam-libs \
lapack \
lapack-devel \
launchmail \
lcms \
lcms-devel \
less \
lftp \
libacl \
libacl-devel \
libaio \
libao \
libart_lgpl \
libart_lgpl-devel \
libattr \
libattr-devel \
libavc1394 \
libbonobo \
libbonobo-devel \
libbonoboui \
libbonoboui-devel \
libcap \
libcap-devel \
libcroco \
libdaemon \
libdap \
libdmx \
libdrm \
libdv \
liberation-fonts \
libevent \
libexif \
libffi \
libfontenc \
libFS \
libgail-gnome \
libgcc \
libgcj \
libgcrypt \
libgcrypt-devel \
libgfortran \
libglade2 \
libglade2-devel \
libgnome \
libgnomecanvas \
libgnomecanvas-devel \
libgnomecups \
libgnome-devel \
libgnomeprint22 \
libgnomeprintui22 \
libgnomeui \
libgnomeui-devel \
libgomp \
libgpg-error \
libgpg-error-devel \
libgpod \
libgsf \
libgssapi \
libgtop2 \
libhugetlbfs \
libICE \
libICE-devel \
libicu \
libIDL \
libIDL-devel \
libidn \
libidn-devel \
libiec61883 \
libieee1284 \
libjpeg \
libjpeg-devel \
libmng \
libmusicbrainz \
libnotify \
libnotify-devel \
libogg \
libogg-devel \
liboil \
libpcap \
libpng \
libpng-devel \
libpurple \
libraw1394 \
libRmath \
libRmath-devel \
libRmath-static \
librsvg2 \
librx \
libsane-hpaio \
libselinux \
libselinux-devel \
libselinux-python \
libselinux-utils \
libsemanage \
libsepol \
libsepol-devel \
libsilc \
libSM \
libsmbclient \
libSM-devel \
libsoup \
libstdc++ \
libstdc++-devel \
libsysfs \
libtermcap \
libtermcap-devel \
libtheora \
libtiff \
libtiff-devel \
libtool \
libtool-ltdl \
libusb \
libusb-devel \
libuser \
libuser-devel \
libutempter \
libvirt \
libvolume_id \
libvorbis \
libvorbis-devel \
libwmf \
libwnck \
libwpd \
libwvstreams \
libX11 \
libX11-devel \
libXau \
libXau-devel \
libXaw \
libXcursor \
libXcursor-devel \
libXdamage \
libXdmcp \
libXdmcp-devel \
libXevie \
libXext \
libXext-devel \
libXfixes \
libXfixes-devel \
libXfont \
libXfontcache \
libXft \
libXft-devel \
libXi \
libXi-devel \
libXinerama \
libXinerama-devel \
libxkbfile \
libxklavier \
libxml2 \
libxml2-devel \
libxml2-python \
libXmu \
libXp \
libXp-devel \
libXpm \
libXpm-devel \
libXrandr \
libXrandr-devel \
libXrender \
libXrender-devel \
libXres \
libXScrnSaver \
libxslt \
libxslt-devel \
libXt \
libXt-devel \
libXTrap \
libXtst \
libXv \
libXxf86dga \
libXxf86misc \
libXxf86vm \
linuxwacom \
lm_sensors \
lockdev \
lockdev-devel \
log4cpp \
logrotate \
logwatch \
lrzsz \
lsof \
ltrace \
lucene \
lvm2 \
m2crypto \
m4 \
mailcap \
mailx \
make \
MAKEDEV \
man \
man-pages \
mcelog \
mcstrans \
mdadm \
meanwhile \
mesa-libGL \
mesa-libGL-devel \
mesa-libGLU \
metacity \
mgetty \
microcode_ctl \
mingetty \
minicom \
mkbootdisk \
mkinitrd \
mkisofs \
mktemp \
mlocate \
module-init-tools \
mpi-selector \
mtools \
mtr \
mutt \
mysql \
nagios-common \
nagios-plugins \
nagios-plugins-all \
nagios-plugins-breeze \
nagios-plugins-by_ssh \
nagios-plugins-cluster \
nagios-plugins-dhcp \
nagios-plugins-dig \
nagios-plugins-disk \
nagios-plugins-disk_smb \
nagios-plugins-dns \
nagios-plugins-dummy \
nagios-plugins-file_age \
nagios-plugins-flexlm \
nagios-plugins-fping \
nagios-plugins-game \
nagios-plugins-hpjd \
nagios-plugins-http \
nagios-plugins-icmp \
nagios-plugins-ide_smart \
nagios-plugins-ircd \
nagios-plugins-ldap \
nagios-plugins-load \
nagios-plugins-log \
nagios-plugins-mailq \
nagios-plugins-mrtg \
nagios-plugins-mrtgtraf \
nagios-plugins-mysql \
nagios-plugins-nagios \
nagios-plugins-nt \
nagios-plugins-ntp \
nagios-plugins-nwstat \
nagios-plugins-oracle \
nagios-plugins-overcr \
nagios-plugins-perl \
nagios-plugins-pgsql \
nagios-plugins-ping \
nagios-plugins-procs \
nagios-plugins-real \
nagios-plugins-rpc \
nagios-plugins-sensors \
nagios-plugins-smtp \
nagios-plugins-snmp \
nagios-plugins-ssh \
nagios-plugins-swap \
nagios-plugins-tcp \
nagios-plugins-time \
nagios-plugins-ups \
nagios-plugins-users \
nagios-plugins-wave \
nano \
nash \
nautilus \
nautilus-cd-burner \
nautilus-extensions \
nautilus-open-terminal \
nautilus-sendto \
nc \
ncurses \
ncurses-devel \
neon \
netpbm \
netpbm-progs \
net-snmp \
net-snmp-libs \
net-snmp-utils \
net-tools \
NetworkManager \
NetworkManager-glib \
NetworkManager-gnome \
newt \
newt-devel \
newt-perl \
nfs-utils \
nfs-utils-lib \
notification-daemon \
notify-python \
nrpe \
nscd \
nspluginwrapper \
nspr \
nspr-devel \
nss \
nss_db \
nss-devel \
nss_ldap \
nss-tools \
ntp \
ntsysv \
numactl \
numpy \
oddjob \
oddjob-libs \
opal \
openjade \
openldap \
openldap-devel \
openoffice.org-calc \
openoffice.org-core \
openoffice.org-draw \
openoffice.org-graphicfilter \
openoffice.org-impress \
openoffice.org-math \
openoffice.org-ure \
openoffice.org-writer \
openoffice.org-xsltfilter \
opensp \
openssh \
openssh-askpass \
openssh-clients \
openssh-server \
openssl \
openssl-devel \
oprofile \
ORBit2 \
ORBit2-devel \
orca \
pam \
pam_ccreds \
pam-devel \
pam_krb5 \
pam_passwdqc \
pam_pkcs11 \
pam_smb \
pango \
pango-devel \
paps \
parted \
passwd \
patch \
patchutils \
pax \
pbzip2 \
pciutils \
pciutils-devel \
pcmciautils \
pcre \
pcre-devel \
pcsc-lite \
pcsc-lite-devel \
pcsc-lite-libs \
perl \
perl-Archive-Tar \
perl-BerkeleyDB \
perl-Class-Accessor \
perl-Compress-Raw-Bzip2 \
perl-Compress-Raw-Zlib \
perl-Compress-Zlib \
perl-Config-Tiny \
perl-DateManip \
perl-DBD-MySQL \
perl-DBD-Pg \
perl-DBD-SQLite \
perl-DBI \
perl-File-Copy-Recursive \
perl-GD \
perl-GDGraph \
perl-GDGraph3d \
perl-GDTextUtil \
perl-HTML-Parser \
perl-HTML-Tagset \
perl-IO-Zlib \
perl-libwww-perl \
perl-libxml-perl \
perl-Math-Calc-Units \
perl-Nagios-Plugin \
perl-Params-Validate \
perl-String-CRC32 \
perl-URI \
perl-XML-LibXML \
perl-XML-LibXML-Common \
perl-XML-NamespaceSupport \
perl-XML-Parser \
perl-XML-SAX \
perl-XML-Simple \
pilot-link \
pinfo \
pirut \
pkgconfig \
pkinit-nss \
planner \
pm-utils \
policycoreutils \
poppler \
poppler-utils \
popt \
porklock \
portmap \
postgresql-libs \
ppp \
prelink \
procmail \
procps \
psacct \
psmisc \
pstack \
psutils \
pwlib \
pycairo \
pygobject2 \
pygtk2 \
pygtk2-libglade \
pyorbit \
PyQt \
pyspi \
python \
python26 \
python26-libs \
python-dateutil \
python-devel \
python-elementtree \
python-imaging \
python-iniparse \
python-ldap \
python-libs \
python-matplotlib \
python-nose \
python-numeric \
python-setuptools \
python-simplejson \
python-sqlite \
python-urlgrabber \
pytz \
pyxf86config \
PyXML \
qstat \
qt \
quota \
R \
R-biglm \
R-car \
R-core \
rcs \
rdate \
R-DBI \
R-devel \
rdist \
readahead \
readline \
readline-devel \
redhat-artwork \
redhat-logos \
redhat-lsb \
redhat-menus \
redhat-rpm-config \
R-hdf5 \
rhgb \
rhino \
rhpl \
rhpxl \
rhythmbox \
R-lmtest \
R-msm \
rmt \
R-multcomp \
R-mvtnorm \
rng-utils \
R-nws \
rootfiles \
rpm \
rpm-build \
rpm-devel \
rpm-libs \
rpm-python \
rp-pppoe \
R-qtl \
R-RM2 \
R-RScaLAPACK \
rsh \
rsync \
R-systemfit \
R-zoo \
sabayon-apply \
samba-client \
samba-common \
sane-backends \
sane-backends-libs \
sane-frontends \
scalapack \
screen \
scrollkeeper \
SDL \
sed \
selinux-policy \
selinux-policy-targeted \
sendmail \
setarch \
setools \
setserial \
setup \
setuptool \
sgml-common \
sgpio \
shadow-utils \
shared-mime-info \
sip \
slang \
slang-devel \
slrn \
smartmontools \
sos \
sound-juicer \
sox \
specspo \
speex \
splint \
sqlite \
sqlite-devel \
startup-notification \
startup-notification-devel \
strace \
stunnel \
subversion \
sudo \
sun-javadb-client \
sun-javadb-common \
sun-javadb-core \
sun-javadb-demo \
sun-javadb-docs \
sun-javadb-javadoc \
swig \
symlinks \
synaptics \
sysfsutils \
sysklogd \
syslinux \
sysstat \
system-config-date \
system-config-display \
system-config-language \
system-config-network \
system-config-network-tui \
system-config-printer \
system-config-printer-libs \
system-config-services \
system-config-soundcard \
system-config-users \
systemtap \
systemtap-client \
systemtap-devel \
systemtap-runtime \
SysVinit \
talk \
tar \
tcl \
tcl-devel \
tcllib \
tclx \
tcpdump \
tcp_wrappers \
tcsh \
telnet \
termcap \
tetex \
tetex-dvips \
tetex-fonts \
tetex-latex \
texinfo \
texinfo-tex \
time \
tix \
tk \
tk-devel \
tkinter \
tmpwatch \
tmux \
tomcat5-jsp-2.0-api \
tomcat5-servlet-2.4-api \
totem \
traceroute \
tree \
trousers \
ttmkfdir \
tzdata \
tzdata-java \
udev \