forked from SciML/ReactionNetworkImporters.jl
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Repressilator.net
93 lines (93 loc) · 3.08 KB
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Repressilator.net
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# Created by BioNetGen 2.3.1
begin parameters
1 Na 6.022e23 # Constant
2 V 1.4e-15 # Constant
3 c0 1e9 # Constant
4 c1 224 # Constant
5 c2 9 # Constant
6 c3 0.5 # Constant
7 c4 5e-4 # Constant
8 c5 0.167 # Constant
9 c6 ln(2)/120 # Constant
10 c7 ln(2)/600 # Constant
11 tF 1e-4 # Constant
12 rF 1000 # Constant
13 pF 1000 # Constant
14 _rateLaw1 (((c0/Na)/V)*tF)/pF # ConstantExpression
15 _rateLaw2 c1*tF # ConstantExpression
16 _rateLaw3 (((c0/Na)/V)*tF)/pF # ConstantExpression
17 _rateLaw4 c2*tF # ConstantExpression
18 _rateLaw5 c3*rF # ConstantExpression
19 _rateLaw6 c4*rF # ConstantExpression
20 _rateLaw7 (c5/rF)*pF # ConstantExpression
21 _rateLaw8 (((c0/Na)/V)*tF)/pF # ConstantExpression
22 _rateLaw9 c1*tF # ConstantExpression
23 _rateLaw10 (((c0/Na)/V)*tF)/pF # ConstantExpression
24 _rateLaw11 c2*tF # ConstantExpression
25 _rateLaw12 c3*rF # ConstantExpression
26 _rateLaw13 c4*rF # ConstantExpression
27 _rateLaw14 (c5/rF)*pF # ConstantExpression
28 _rateLaw15 (((c0/Na)/V)*tF)/pF # ConstantExpression
29 _rateLaw16 c1*tF # ConstantExpression
30 _rateLaw17 (((c0/Na)/V)*tF)/pF # ConstantExpression
31 _rateLaw18 c2*tF # ConstantExpression
32 _rateLaw19 c3*rF # ConstantExpression
33 _rateLaw20 c4*rF # ConstantExpression
34 _rateLaw21 (c5/rF)*pF # ConstantExpression
end parameters
begin species
1 Null() 1
2 gTetR(lac!1,lac!2).pLacI(tet!1).pLacI(tet!2) 1
3 gCI(tet!1,tet!2).pTetR(cI!1).pTetR(cI!2) 1
4 gLacI(cI!1,cI!2).pCI(lac!1).pCI(lac!2) 1
5 mTetR() 3163
6 mCI() 6819
7 mLacI() 129
8 pTetR(cI) 183453
9 pCI(lac) 2006198
10 pLacI(tet) 165670
11 gTetR(lac!1,lac).pLacI(tet!1) 0
12 gCI(tet!1,tet).pTetR(cI!1) 0
13 gLacI(cI!1,cI).pCI(lac!1) 0
14 gTetR(lac,lac) 0
15 gCI(tet,tet) 0
16 gLacI(cI,cI) 0
end species
begin reactions
1 2 10,11 2*_rateLaw4 #_reverse__R2
2 2 2,5 _rateLaw6 #_R4
3 5 5,8 _rateLaw7 #_R5
4 1,5 1 c6 #_R6
5 1,8 1 c7 #_R7
6 3 8,12 2*_rateLaw11 #_reverse__R9
7 3 3,6 _rateLaw13 #_R11
8 6 6,9 _rateLaw14 #_R12
9 1,6 1 c6 #_R13
10 1,9 1 c7 #_R14
11 4 9,13 2*_rateLaw18 #_reverse__R16
12 4 4,7 _rateLaw20 #_R18
13 7 7,10 _rateLaw21 #_R19
14 1,7 1 c6 #_R20
15 1,10 1 c7 #_R21
16 11 10,14 _rateLaw2 #_reverse__R1
17 10,11 2 _rateLaw3 #_R2
18 11 5,11 _rateLaw6 #_R4
19 12 8,15 _rateLaw9 #_reverse__R8
20 8,12 3 _rateLaw10 #_R9
21 12 6,12 _rateLaw13 #_R11
22 13 9,16 _rateLaw16 #_reverse__R15
23 9,13 4 _rateLaw17 #_R16
24 13 7,13 _rateLaw20 #_R18
25 10,14 11 2*_rateLaw1 #_R1
26 14 5,14 _rateLaw5 #_R3
27 8,15 12 2*_rateLaw8 #_R8
28 15 6,15 _rateLaw12 #_R10
29 9,16 13 2*_rateLaw15 #_R15
30 16 7,16 _rateLaw19 #_R17
end reactions
begin groups
1 pTetR 8
2 pCI 9
3 pLacI 10
4 NULL 1
end groups