@isb-cgc

ISB Cancer Genomics Cloud

The ISB-CGC is providing access to TCGA data and computation on the Google Cloud Platform.

  • ISB-CGC-Webapp

    ISB CGC Webapp

    JavaScript 9 5 Apache-2.0 Updated Aug 18, 2018

  • ISB-CGC-Common

    Shared code between repositories

    Python 1 2 Updated Aug 18, 2018

  • ISB-CGC-API

    Google Endpoints API Used to Drive CGC Webapp

    Python 2 Apache-2.0 Updated Aug 15, 2018

  • radiology-viewer

    Radiology Viewer

    Shell 1 Updated Aug 6, 2018

  • readthedocs

    Documentation for the ISB-CGC on Read the Docs.

    Python 2 11 Apache-2.0 Updated Aug 6, 2018

  • ohif-viewer

    Forked from OHIF/Viewers

    OHIF zero-footprint DICOM viewer and oncology specific Lesion Tracker, plus shared Meteor packages

    JavaScript 130 MIT Updated Aug 2, 2018

  • quip_distro

    Forked from SBU-BMI/quip_distro
    Shell 4 BSD-3-Clause Updated Jul 12, 2018

  • ISB-CGC-data-proc

    code for uploading cancer data into GCS and BigQuery

    Python 1 5 Apache-2.0 Updated Jun 29, 2018

  • ViewerDockerContainer

    Forked from camicroscope/ViewerDockerContainer

    Dockerfile for caMicroscope viewer. Includes Apache, PHP, IIPSrv and caMicroscope.

    JavaScript 1 7 Apache-2.0 Updated Jun 21, 2018

  • examples-Compute

    Common Workflow Language 6 1 Updated Apr 25, 2018

  • caMicroscope

    Forked from camicroscope/caMicroscope

    Digital pathology image viewer with support for human/machine generated annotations and markups.

    JavaScript 8 Apache-2.0 Updated Mar 26, 2018

  • examples-Python

    Analysis examples based on the ISB-CGC hosted TCGA data, using Python and IPython Notebooks.

    Jupyter Notebook 32 12 Apache-2.0 Updated Mar 8, 2018

  • ISB-CGC-Examples

    Shell Apache-2.0 Updated Mar 2, 2018

  • ISB-CGC-Camic-Proxy

    Proxy server to sit in front of VM that runs caMicroscope

    Python Updated Dec 18, 2017

  • examples-R

    Analysis examples based on the ISB-CGC hosted TCGA data, using R and R Markdown.

    HTML 18 10 Apache-2.0 Updated Nov 27, 2017

  • User-Data-Processor

    This is a repository devoted to the user data processor.

    Python 1 1 Apache-2.0 Updated Jun 13, 2017

  • ISB-CGC-pipelines

    Framework for running bioinformatic workflows and pipelines using the Google Pipelines API as the underlying task-runner.

    Python 9 5 Apache-2.0 Updated Mar 22, 2017

  • paramiko

    Forked from paramiko/paramiko

    Native Python SSHv2 protocol library

    Python 1 1,207 LGPL-2.1 Updated Oct 24, 2015

  • Feature-Matrix-Prototyping

    Forked from lucena/GenomicsFeatures

    Feature Matrix ETL and UI on GCP

    Python 1 2 Apache-2.0 Updated Jan 7, 2015

  • ga4gh-server

    Forked from ga4gh/ga4gh-server

    A reference implementation of the APIs defined in the schemas repository.

    Python 1 99 Apache-2.0 Updated Nov 5, 2014
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    People
    @deflaux deflaux Nicole Deflaux