ISB Cancer Genomics Cloud

Repositories

• ISB-CGC-Common

  Shared code between repositories
  Python 3 1 0 0 Updated Jul 14, 2020

• ISB-CGC-Webapp

  ISB CGC Webapp
  JavaScript Apache-2.0 7 11 7 0 Updated Jul 14, 2020

• BQEcosystem

  BQ Table descriptions/schema and installation scripts
  Shell 3 0 1 0 Updated Jul 13, 2020

• readthedocs

  Documentation for the ISB-CGC on Read the Docs.
  Python Apache-2.0 15 5 0 0 Updated Jul 12, 2020

• radiology-viewer

  Radiology Viewer
  Shell 0 1 0 0 Updated Jul 10, 2020

• Community-Notebooks

  Repository for Jupyter Notebooks
  Jupyter Notebook Apache-2.0 6 7 0 0 Updated Jul 10, 2020

• NextGenETL

  ETL Processes and Scripts (2019)
  Python 4 0 0 0 Updated Jul 9, 2020

• RunningWorkflows-on-the-GoogleCloud
  Common Workflow Language 1 0 0 0 Updated Jul 9, 2020

• quip_distro

  Forked from SBU-BMI/quip_distro
  Shell BSD-3-Clause 9 0 0 0 Updated Jul 1, 2020

• ISB-CGC-API

  Google Endpoints API Used to Drive CGC Webapp
  Python Apache-2.0 2 2 0 2 Updated Jun 5, 2020

• ViewerDockerContainer

  Forked from camicroscope/ViewerDockerContainer

  Dockerfile for caMicroscope viewer. Includes Apache, PHP, IIPSrv and caMicroscope.
  JavaScript Apache-2.0 7 1 0 0 Updated Aug 19, 2019

• caMicroscope

  Forked from camicroscope/caMicroscope

  Digital pathology image viewer with support for human/machine generated annotations and markups.
  JavaScript Apache-2.0 58 0 0 0 Updated Aug 19, 2019

• ohif-viewer

  Forked from OHIF/Viewers

  OHIF zero-footprint DICOM viewer and oncology specific Lesion Tracker, plus shared Meteor packages
  JavaScript MIT 834 0 0 0 Updated Aug 1, 2019

• gargle

  Forked from r-lib/gargle

  Infrastructure for calling Google APIs from R, including auth
  R 17 0 0 0 Updated Jul 26, 2019

• examples-Python

  Analysis examples based on the ISB-CGC hosted TCGA data, using Python and IPython Notebooks.
  Jupyter Notebook Apache-2.0 17 43 2 0 Updated Jul 20, 2019

• ISB-CGC-data-proc

  code for uploading cancer data into GCS and BigQuery
  Python Apache-2.0 6 1 0 3 Updated Apr 24, 2019

• gemini

  Forked from arq5x/gemini

  a lightweight db framework for exploring genetic variation.
  Python MIT 116 0 0 0 Updated Sep 14, 2018

• examples-Compute
  Common Workflow Language 1 6 0 0 Updated Apr 25, 2018

• ISB-CGC-Examples
  Shell Apache-2.0 0 0 0 0 Updated Mar 2, 2018

• examples-R

  Analysis examples based on the ISB-CGC hosted TCGA data, using R and R Markdown.
  HTML Apache-2.0 14 28 2 0 Updated Nov 27, 2017

• User-Data-Processor

  This is a repository devoted to the user data processor.
  Python Apache-2.0 1 1 0 0 Updated Jun 13, 2017

• ISB-CGC-pipelines

  Framework for running bioinformatic workflows and pipelines using the Google Pipelines API as the underlying task-runner.
  Python Apache-2.0 5 10 6 0 Updated Mar 22, 2017

• paramiko

  Forked from paramiko/paramiko

  Native Python SSHv2 protocol library
  Python LGPL-2.1 1,565 1 0 0 Updated Oct 24, 2015

• Feature-Matrix-Prototyping

  Forked from lucena/GenomicsFeatures

  Feature Matrix ETL and UI on GCP
  Python Apache-2.0 2 1 0 0 Updated Jan 7, 2015

• ga4gh-server

  Forked from ga4gh/ga4gh-server

  A reference implementation of the APIs defined in the schemas repository.
  Python Apache-2.0 94 1 0 0 Updated Nov 5, 2014