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iso_plot_ref_peaks.html
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iso_plot_ref_peaks.html
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<h1>Plot reference peaks</h1>
<small class="dont-index">Source: <a href='https://github.com/isoverse/isoprocessor/blob/master/R/visualization.R'><code>R/visualization.R</code></a></small>
<div class="hidden name"><code>iso_plot_ref_peaks.Rd</code></div>
</div>
<div class="ref-description">
<p>Visualize how consistent the reference peaks are across a serious of samples.</p>
</div>
<pre class="usage"><span class='fu'>iso_plot_ref_peaks</span>(
<span class='no'>dt</span>,
<span class='no'>x</span>,
<span class='no'>ratio</span>,
<span class='no'>...</span>,
<span class='kw'>group_id</span> <span class='kw'>=</span> <span class='no'>file_id</span>,
<span class='kw'>is_ref_condition</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>,
<span class='kw'>within_group</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>,
<span class='kw'>is_ref_used</span> <span class='kw'>=</span> <span class='kw'>NULL</span>
)</pre>
<h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a>Arguments</h2>
<table class="ref-arguments">
<colgroup><col class="name" /><col class="desc" /></colgroup>
<tr>
<th>dt</th>
<td><p>data table</p></td>
</tr>
<tr>
<th>x</th>
<td><p>which column to use for the x-axis</p></td>
</tr>
<tr>
<th>ratio</th>
<td><p>which ratio column(s) to compare for the reference peaks (can be multiple)</p></td>
</tr>
<tr>
<th>...</th>
<td><p>additional parameters passed to <a href='iso_plot_data.html'>iso_plot_data</a></p></td>
</tr>
<tr>
<th>group_id</th>
<td><p>group identifier column(s) to clarify across which data groups the reference peak deviation should be calcualted. By default calculates reference peak variations within each analysis.</p></td>
</tr>
<tr>
<th>is_ref_condition</th>
<td><p>condition to identify which of the peaks are reference peaks (unless the peaks are prefilterd already). Must be a column or expression that evaluates to a logical (TRUE/FALSE).</p></td>
</tr>
<tr>
<th>within_group</th>
<td><p>deprectated, use <code>group_id</code> to group accordingly</p></td>
</tr>
<tr>
<th>is_ref_used</th>
<td><p>deprecated, set an aesthetics directly via ... paramter to <a href='iso_plot_data.html'>iso_plot_data</a></p></td>
</tr>
</table>
<h2 class="hasAnchor" id="see-also"><a class="anchor" href="#see-also"></a>See also</h2>
<div class='dont-index'><p>Other plot functions:
<code><a href='iso_mark_calibration_range.html'>iso_mark_calibration_range</a>()</code>,
<code><a href='iso_mark_outliers.html'>iso_mark_outliers</a>()</code>,
<code><a href='iso_mark_value_range.html'>iso_mark_value_range</a>()</code>,
<code><a href='iso_plot_continuous_flow_data.html'>iso_plot_continuous_flow_data</a>()</code>,
<code><a href='iso_plot_data.html'>iso_plot_data</a>()</code>,
<code><a href='iso_plot_dual_inlet_data.html'>iso_plot_dual_inlet_data</a>()</code>,
<code><a href='iso_plot_raw_data.html'>iso_plot_raw_data</a>()</code>,
<code><a href='iso_plot_residuals.html'>iso_plot_residuals</a>()</code>,
<code><a href='iso_plot_scan_data.html'>iso_plot_scan_data</a>()</code>,
<code><a href='iso_prepare_continuous_flow_plot_data.html'>iso_prepare_continuous_flow_plot_data</a>()</code>,
<code><a href='iso_prepare_scan_plot_data.html'>iso_prepare_scan_plot_data</a>()</code></p></div>
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<h2>Contents</h2>
<ul class="nav nav-pills nav-stacked">
<li><a href="#arguments">Arguments</a></li>
<li><a href="#see-also">See also</a></li>
</ul>
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