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iso_prepare_scan_plot_data.html
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iso_prepare_scan_plot_data.html
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<h1>Prepare plotting data from scan files</h1>
<small class="dont-index">Source: <a href='https://github.com/isoverse/isoprocessor/blob/master/R/visualization.R'><code>R/visualization.R</code></a></small>
<div class="hidden name"><code>iso_prepare_scan_plot_data.Rd</code></div>
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<div class="ref-description">
<p>This function helps with the preparation of plotting data from scan files. Call either explicity and pass the result to <code><a href='iso_plot_scan_data.html'>iso_plot_scan_data</a></code> or let <code><a href='iso_plot_scan_data.html'>iso_plot_scan_data</a></code> take care of preparing the plotting data directly from the <code>iso_files</code>.</p>
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<pre class="usage"><span class='fu'>iso_prepare_scan_plot_data</span>(
<span class='no'>iso_files</span>,
<span class='kw'>data</span> <span class='kw'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/c.html'>c</a></span>(),
<span class='kw'>include_file_info</span> <span class='kw'>=</span> <span class='no'>type</span>,
<span class='kw'>filter</span> <span class='kw'>=</span> <span class='kw'>NULL</span>
)</pre>
<h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a>Arguments</h2>
<table class="ref-arguments">
<colgroup><col class="name" /><col class="desc" /></colgroup>
<tr>
<th>iso_files</th>
<td><p>collection of iso_file objects</p></td>
</tr>
<tr>
<th>data</th>
<td><p>which masses and ratios to plot (e.g. <code><a href='https://rdrr.io/r/base/c.html'>c("44", "45", "45/44")</a></code> - without the units), if omitted, all available masses and ratios are plotted. Note that ratios should be calculated using <code><a href='iso_calculate_ratios.html'>iso_calculate_ratios</a></code> prior to plotting.</p></td>
</tr>
<tr>
<th>include_file_info</th>
<td><p>which file information to include (see <a href='https://rdrr.io/pkg/isoreader/man/iso_get_file_info.html'>iso_get_file_info</a>). Use c(...) to select multiple, supports all <a href='https://dplyr.tidyverse.org/reference/select.html'>select</a> syntax including renaming columns.</p></td>
</tr>
<tr>
<th>filter</th>
<td><p>any filter condition to apply to the data beyond the masses/ratio selection (param <code>data</code>) and time interval (param <code>time_interval</code>). For details on the available data columns see <a href='https://rdrr.io/pkg/isoreader/man/iso_get_raw_data.html'>iso_get_raw_data</a> with parameters <code>gather = TRUE</code> and <code>include_file_info = everything()</code> (i.e. all file info is available for plotting aesthetics).</p></td>
</tr>
</table>
<h2 class="hasAnchor" id="see-also"><a class="anchor" href="#see-also"></a>See also</h2>
<div class='dont-index'><p>Other plot functions:
<code><a href='iso_mark_calibration_range.html'>iso_mark_calibration_range</a>()</code>,
<code><a href='iso_mark_outliers.html'>iso_mark_outliers</a>()</code>,
<code><a href='iso_mark_value_range.html'>iso_mark_value_range</a>()</code>,
<code><a href='iso_plot_continuous_flow_data.html'>iso_plot_continuous_flow_data</a>()</code>,
<code><a href='iso_plot_data.html'>iso_plot_data</a>()</code>,
<code><a href='iso_plot_dual_inlet_data.html'>iso_plot_dual_inlet_data</a>()</code>,
<code><a href='iso_plot_raw_data.html'>iso_plot_raw_data</a>()</code>,
<code><a href='iso_plot_ref_peaks.html'>iso_plot_ref_peaks</a>()</code>,
<code><a href='iso_plot_residuals.html'>iso_plot_residuals</a>()</code>,
<code><a href='iso_plot_scan_data.html'>iso_plot_scan_data</a>()</code>,
<code><a href='iso_prepare_continuous_flow_plot_data.html'>iso_prepare_continuous_flow_plot_data</a>()</code></p></div>
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<h2>Contents</h2>
<ul class="nav nav-pills nav-stacked">
<li><a href="#arguments">Arguments</a></li>
<li><a href="#see-also">See also</a></li>
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