/
iso_mark_x_range.html
226 lines (177 loc) · 9.4 KB
/
iso_mark_x_range.html
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
<!-- Generated by pkgdown: do not edit by hand -->
<!DOCTYPE html>
<html lang="en">
<head>
<meta charset="utf-8">
<meta http-equiv="X-UA-Compatible" content="IE=edge">
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>Visualize x range — iso_mark_x_range • isoprocessor</title>
<!-- favicons -->
<link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png">
<link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png">
<link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png" />
<link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png" />
<link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png" />
<link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png" />
<!-- jquery -->
<script src="https://cdnjs.cloudflare.com/ajax/libs/jquery/3.4.1/jquery.min.js" integrity="sha256-CSXorXvZcTkaix6Yvo6HppcZGetbYMGWSFlBw8HfCJo=" crossorigin="anonymous"></script>
<!-- Bootstrap -->
<link href="https://cdnjs.cloudflare.com/ajax/libs/bootswatch/3.4.0/simplex/bootstrap.min.css" rel="stylesheet" crossorigin="anonymous" />
<script src="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.4.1/js/bootstrap.min.js" integrity="sha256-nuL8/2cJ5NDSSwnKD8VqreErSWHtnEP9E7AySL+1ev4=" crossorigin="anonymous"></script>
<!-- bootstrap-toc -->
<link rel="stylesheet" href="../bootstrap-toc.css">
<script src="../bootstrap-toc.js"></script>
<!-- Font Awesome icons -->
<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous" />
<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous" />
<!-- clipboard.js -->
<script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.6/clipboard.min.js" integrity="sha256-inc5kl9MA1hkeYUt+EC3BhlIgyp/2jDIyBLS6k3UxPI=" crossorigin="anonymous"></script>
<!-- headroom.js -->
<script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script>
<script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script>
<!-- pkgdown -->
<link href="../pkgdown.css" rel="stylesheet">
<script src="../pkgdown.js"></script>
<meta property="og:title" content="Visualize x range — iso_mark_x_range" />
<meta property="og:description" content="This is a convenience function to visualize x ranges with gray vertical boxes in a plot (typically one generated by iso_plot_data) by specifying a simple filter condition. Considers the facet variables (if any are set) to evaluate the condition within each panel." />
<!-- mathjax -->
<script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script>
<script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script>
<!--[if lt IE 9]>
<script src="https://oss.maxcdn.com/html5shiv/3.7.3/html5shiv.min.js"></script>
<script src="https://oss.maxcdn.com/respond/1.4.2/respond.min.js"></script>
<![endif]-->
<!-- Global site tag (gtag.js) - Google Analytics -->
<script async src="https://www.googletagmanager.com/gtag/js?id=UA-106138361-4"></script>
<script>
window.dataLayer = window.dataLayer || [];
function gtag(){dataLayer.push(arguments);}
gtag('js', new Date());
gtag('config', 'UA-106138361-4');
</script>
</head>
<body data-spy="scroll" data-target="#toc">
<div class="container template-reference-topic">
<header>
<div class="navbar navbar-default navbar-fixed-top" role="navigation">
<div class="container">
<div class="navbar-header">
<button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar" aria-expanded="false">
<span class="sr-only">Toggle navigation</span>
<span class="icon-bar"></span>
<span class="icon-bar"></span>
<span class="icon-bar"></span>
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">isoprocessor</a>
<span class="version label label-danger" data-toggle="tooltip" data-placement="bottom" title="in active development">0.6.11</span>
</span>
</div>
<div id="navbar" class="navbar-collapse collapse">
<ul class="nav navbar-nav">
<li>
<a href="../articles/dual_inlet.html">Dual Inlet</a>
</li>
<li>
<a href="../articles/continuous_flow.html">Continuous Flow</a>
</li>
<li>
<a href="../articles/scan.html">Scan</a>
</li>
<li class="dropdown">
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
Processing Examples
<span class="caret"></span>
</a>
<ul class="dropdown-menu" role="menu">
<li>
<a href="../articles/ea_irms_example_carbon.html">Bulk carbon isotope analysis</a>
</li>
<li>
<a href="../articles/gc_irms_example_carbon.html">Compound specific carbon isotope analysis</a>
</li>
</ul>
</li>
<li>
<a href="../reference/index.html">Reference</a>
</li>
</ul>
<ul class="nav navbar-nav navbar-right">
<li>
<a href="https://github.com/isoverse/isoprocessor">
<span class="fa fa-github fa-lg"></span>
</a>
</li>
</ul>
</div><!--/.nav-collapse -->
</div><!--/.container -->
</div><!--/.navbar -->
</header>
<div class="row">
<div class="col-md-9 contents">
<div class="page-header">
<h1>Visualize x range</h1>
<small class="dont-index">Source: <a href='https://github.com/isoverse/isoprocessor/blob/master/R/visualization.R'><code>R/visualization.R</code></a></small>
<div class="hidden name"><code>iso_mark_x_range.Rd</code></div>
</div>
<div class="ref-description">
<p>This is a convenience function to visualize x ranges with gray vertical boxes in a plot (typically one generated by <code><a href='iso_plot_data.html'>iso_plot_data</a></code>) by specifying a simple filter condition. Considers the facet variables (if any are set) to evaluate the condition within each panel.</p>
</div>
<pre class="usage"><span class='fu'>iso_mark_x_range</span><span class='op'>(</span><span class='va'>p</span>, <span class='va'>condition</span>, color <span class='op'>=</span> <span class='cn'>NA</span>, fill <span class='op'>=</span> <span class='st'>"gray"</span>, alpha <span class='op'>=</span> <span class='fl'>0.25</span><span class='op'>)</span></pre>
<h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a>Arguments</h2>
<table class="ref-arguments">
<colgroup><col class="name" /><col class="desc" /></colgroup>
<tr>
<th>p</th>
<td><p>a <a href='https://ggplot2.tidyverse.org/reference/ggplot.html'>ggplot</a> object, typically generated by <code><a href='iso_plot_data.html'>iso_plot_data</a></code></p></td>
</tr>
<tr>
<th>condition</th>
<td><p>any <a href='https://dplyr.tidyverse.org/reference/filter.html'>filter</a> expression to identify x ranges to mark</p></td>
</tr>
<tr>
<th>color</th>
<td><p>color of the shading boxes</p></td>
</tr>
<tr>
<th>fill</th>
<td><p>fill of the shading boxes</p></td>
</tr>
<tr>
<th>alpha</th>
<td><p>alpha of the shading boxes</p></td>
</tr>
</table>
<h2 class="hasAnchor" id="see-also"><a class="anchor" href="#see-also"></a>See also</h2>
<div class='dont-index'><p>Other plot functions:
<code><a href='iso_mark_calibration_range.html'>iso_mark_calibration_range</a>()</code>,
<code><a href='iso_mark_outliers.html'>iso_mark_outliers</a>()</code>,
<code><a href='iso_mark_value_range.html'>iso_mark_value_range</a>()</code>,
<code><a href='iso_plot_continuous_flow_data.html'>iso_plot_continuous_flow_data</a>()</code>,
<code><a href='iso_plot_data.html'>iso_plot_data</a>()</code>,
<code><a href='iso_plot_dual_inlet_data.html'>iso_plot_dual_inlet_data</a>()</code>,
<code><a href='iso_plot_raw_data.html'>iso_plot_raw_data</a>()</code>,
<code><a href='iso_plot_ref_peaks.html'>iso_plot_ref_peaks</a>()</code>,
<code><a href='iso_plot_residuals.html'>iso_plot_residuals</a>()</code>,
<code><a href='iso_plot_scan_data.html'>iso_plot_scan_data</a>()</code>,
<code><a href='iso_prepare_continuous_flow_plot_data.html'>iso_prepare_continuous_flow_plot_data</a>()</code>,
<code><a href='iso_prepare_dual_inlet_plot_data.html'>iso_prepare_dual_inlet_plot_data</a>()</code>,
<code><a href='iso_prepare_scan_plot_data.html'>iso_prepare_scan_plot_data</a>()</code></p></div>
</div>
<div class="col-md-3 hidden-xs hidden-sm" id="pkgdown-sidebar">
<nav id="toc" data-toggle="toc" class="sticky-top">
<h2 data-toc-skip>Contents</h2>
</nav>
</div>
</div>
<footer>
<div class="copyright">
<p>Developed by Sebastian Kopf.</p>
</div>
<div class="pkgdown">
<p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.6.1.</p>
</div>
</footer>
</div>
</body>
</html>