iso_plot_ref_peaks.Rd

% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/visualization.R
\name{iso_plot_ref_peaks}
\alias{iso_plot_ref_peaks}
\title{Plot reference peaks}
\usage{
iso_plot_ref_peaks(dt, ratio, group_id, is_ref_condition,
  is_ref_used = NULL, within_group = FALSE)
}
\arguments{
\item{dt}{data table}

\item{ratio}{which ratio column(s) to compare for the reference peaks (can be multiple)}

\item{group_id}{group identifier column(s) to clarify which peaks belongs to a single analysis - first column in group id is used for x axis labels}

\item{is_ref_condition}{condition to identify which of the peaks are reference peaks. Must be a column or expression that evaluates to a logical (TRUE/FALSE).}

\item{is_ref_used}{[optional] parameter to identify which of the reference peaks (\code{is_ref_condition}) are actually used for ratio/ratio calculations. Must be a column or expresion that evaluates to a logical (TRUE/FALSE). If this parameter is provided, the used reference peaks are higlight in solid while the other peaks are slightly opaque.}

\item{within_group}{whether to visualize the deviation within the specified group or across all groups}
}
\description{
Visualize how consistent the reference peaks are across a serious of samples.
}