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<!DOCTYPE html>
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<meta property="og:description" content="These classes get contents from paper pages ( html) or files ( PDF, TeX) Supported journals are listed here (Supported journals · iwasakishuto/Translation-Gummy Wiki), and if you want to support fo..." />
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<div class="section" id="module-gummy.journals">
<span id="gummy-journals-module"></span><h1>gummy.journals module<a class="headerlink" href="#module-gummy.journals" title="Permalink to this headline">¶</a></h1>
<p>These classes get contents from paper pages ( <code class="docutils literal notranslate"><span class="pre">html</span></code> ) or files ( <code class="docutils literal notranslate"><span class="pre">PDF</span></code>, <code class="docutils literal notranslate"><span class="pre">TeX</span></code>)</p>
<p>Supported journals are listed <a class="reference external" href="https://github.com/iwasakishuto/Translation-Gummy/wiki/Supported-journals">here (Supported journals · iwasakishuto/Translation-Gummy Wiki)</a>,
and if you want to support for new journals, please request on twitter DM <a class="reference external" href="https://www.twitter.com/messages/compose?recipient_id=1042783905697288193&text=Please%20support%20this%20journal%3A%20"><img alt="twitter badge" src="https://img.shields.io/badge/twitter-Requests-1da1f2?style=flat-square&logo=twitter" /></a> or <a class="reference external" href="https://github.com/iwasakishuto/Translation-Gummy/issues">Github issues</a>.</p>
<p>You can easily get (import) <code class="docutils literal notranslate"><span class="pre">Journal</span> <span class="pre">Crawler</span> <span class="pre">Class</span></code> by the following ways.</p>
<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="kn">from</span> <span class="nn">gummy</span> <span class="kn">import</span> <span class="n">journals</span>
<span class="gp">>>> </span><span class="n">crawler</span> <span class="o">=</span> <span class="n">journals</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">"nature"</span><span class="p">)</span>
<span class="gp">>>> </span><span class="n">crawler</span>
<span class="go"><gummy.journals.NatureCrawler at 0x1256777c0></span>
<span class="gp">>>> </span><span class="kn">from</span> <span class="nn">gummy.journals</span> <span class="kn">import</span> <span class="n">NatureCrawler</span>
<span class="gp">>>> </span><span class="n">nature</span> <span class="o">=</span> <span class="n">NatureCrawler</span><span class="p">()</span>
<span class="gp">>>> </span><span class="n">nature</span>
<span class="go"><gummy.journals.NatureCrawler at 0x1253da9a0></span>
<span class="gp">>>> </span><span class="n">crawler</span> <span class="o">=</span> <span class="n">journals</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">nature</span><span class="p">)</span>
<span class="gp">>>> </span><span class="nb">id</span><span class="p">(</span><span class="n">crawler</span><span class="p">)</span> <span class="o">==</span> <span class="nb">id</span><span class="p">(</span><span class="n">nature</span><span class="p">)</span>
<span class="go">True</span>
</pre></div>
</div>
<dl class="py class">
<dt id="gummy.journals.GummyAbstJournal">
<em class="property">class </em><code class="sig-prename descclassname">gummy.journals.</code><code class="sig-name descname">GummyAbstJournal</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">crawl_type</span><span class="o">=</span><span class="default_value">'soup'</span></em>, <em class="sig-param"><span class="n">gateway</span><span class="o">=</span><span class="default_value">'useless'</span></em>, <em class="sig-param"><span class="n">sleep_for_loading</span><span class="o">=</span><span class="default_value">3</span></em>, <em class="sig-param"><span class="n">verbose</span><span class="o">=</span><span class="default_value">True</span></em>, <em class="sig-param"><span class="n">DecomposeTexTags</span><span class="o">=</span><span class="default_value">['<cit.>', '\xa0', '<ref>']</span></em>, <em class="sig-param"><span class="n">DecomposeSoupTags</span><span class="o">=</span><span class="default_value">[{'name': 'link'}, {'name': 'meta'}, {'name': 'noscript'}, {'name': 'script'}, {'name': 'style'}, {'name': 'sup'}]</span></em>, <em class="sig-param"><span class="n">subheadTags</span><span class="o">=</span><span class="default_value">[]</span></em>, <em class="sig-param"><span class="o">**</span><span class="n">kwargs</span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/gummy/journals.html#GummyAbstJournal"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#gummy.journals.GummyAbstJournal" title="Permalink to this definition">¶</a></dt>
<dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">object</span></code></p>
<p>If you want define your own journal crawlers, please inherit this class and define these methods:</p>
<ul class="simple">
<li><dl class="simple">
<dt>if <code class="docutils literal notranslate"><span class="pre">crawl_type</span></code> == <code class="docutils literal notranslate"><span class="pre">"tex"</span></code>:</dt><dd><ul>
<li><p><a class="reference internal" href="#gummy.journals.GummyAbstJournal.get_contents_tex" title="gummy.journals.GummyAbstJournal.get_contents_tex"><code class="xref py py-meth docutils literal notranslate"><span class="pre">get_contents_tex(self,</span> <span class="pre">url,</span> <span class="pre">driver=None)</span></code></a></p></li>
<li><p>(required) get_contents_tex(self, url, driver=None)</p></li>
<li><p>(required) get_sections_from_tex(tex)</p></li>
<li><p>(required) get_contents_from_tex_sections(tex_sections)</p></li>
</ul>
</dd>
</dl>
</li>
<li><dl class="simple">
<dt>if <code class="docutils literal notranslate"><span class="pre">crawl_type</span></code> == <code class="docutils literal notranslate"><span class="pre">"soup"</span></code>:</dt><dd><ul>
<li><p><a class="reference internal" href="#gummy.journals.GummyAbstJournal.get_soup_source" title="gummy.journals.GummyAbstJournal.get_soup_source"><code class="xref py py-meth docutils literal notranslate"><span class="pre">get_soup_source(self,</span> <span class="pre">url,</span> <span class="pre">driver=None,</span> <span class="pre">**gatewaykwargs)</span></code></a></p></li>
<li><p><a class="reference internal" href="#gummy.journals.GummyAbstJournal.get_contents_soup" title="gummy.journals.GummyAbstJournal.get_contents_soup"><code class="xref py py-meth docutils literal notranslate"><span class="pre">get_contents_soup(self,</span> <span class="pre">url,</span> <span class="pre">driver=None,</span> <span class="pre">**gatewaykwargs)</span></code></a></p></li>
<li><p>(if necessary) <a class="reference internal" href="#gummy.journals.GummyAbstJournal.get_contents_from_soup_sections" title="gummy.journals.GummyAbstJournal.get_contents_from_soup_sections"><code class="xref py py-meth docutils literal notranslate"><span class="pre">get_contents_from_soup_sections(self,</span> <span class="pre">soup_sections)</span></code></a></p></li>
<li><p>(required) <a class="reference internal" href="#gummy.journals.GummyAbstJournal.get_title_from_soup" title="gummy.journals.GummyAbstJournal.get_title_from_soup"><code class="xref py py-meth docutils literal notranslate"><span class="pre">get_title_from_soup(self,</span> <span class="pre">soup)</span></code></a></p></li>
<li><p>(required) <a class="reference internal" href="#gummy.journals.GummyAbstJournal.get_sections_from_soup" title="gummy.journals.GummyAbstJournal.get_sections_from_soup"><code class="xref py py-meth docutils literal notranslate"><span class="pre">get_sections_from_soup(self,</span> <span class="pre">soup)</span></code></a></p></li>
<li><p>(required) <a class="reference internal" href="#gummy.journals.GummyAbstJournal.get_head_from_section" title="gummy.journals.GummyAbstJournal.get_head_from_section"><code class="xref py py-meth docutils literal notranslate"><span class="pre">get_head_from_section(self,</span> <span class="pre">section)</span></code></a></p></li>
<li><p>(if necessary) <a class="reference internal" href="#gummy.journals.GummyAbstJournal.make_elements_visible" title="gummy.journals.GummyAbstJournal.make_elements_visible"><code class="xref py py-meth docutils literal notranslate"><span class="pre">make_elements_visible(self,</span> <span class="pre">driver)</span></code></a></p></li>
<li><p><a class="reference internal" href="#gummy.journals.GummyAbstJournal.decompose_soup_tags" title="gummy.journals.GummyAbstJournal.decompose_soup_tags"><code class="xref py py-meth docutils literal notranslate"><span class="pre">decompose_soup_tags(self,</span> <span class="pre">soup)</span></code></a></p></li>
<li><p><a class="reference internal" href="#gummy.journals.GummyAbstJournal.organize_soup_section" title="gummy.journals.GummyAbstJournal.organize_soup_section"><code class="xref py py-meth docutils literal notranslate"><span class="pre">organize_soup_section(self,</span> <span class="pre">section,</span> <span class="pre">head="",</span> <span class="pre">head_is_not_added=True)</span></code></a></p></li>
</ul>
</dd>
</dl>
</li>
<li><dl class="simple">
<dt>if <code class="docutils literal notranslate"><span class="pre">crawl_type</span></code> == <code class="docutils literal notranslate"><span class="pre">"pdf"</span></code>:</dt><dd><ul>
<li><p><a class="reference internal" href="#gummy.journals.GummyAbstJournal.get_contents_pdf" title="gummy.journals.GummyAbstJournal.get_contents_pdf"><code class="xref py py-meth docutils literal notranslate"><span class="pre">get_contents_pdf(self,</span> <span class="pre">url,</span> <span class="pre">driver=None)</span></code></a></p></li>
<li><p><a class="reference internal" href="#gummy.journals.GummyAbstJournal.get_pdf_source" title="gummy.journals.GummyAbstJournal.get_pdf_source"><code class="xref py py-meth docutils literal notranslate"><span class="pre">get_pdf_source(self,</span> <span class="pre">url,</span> <span class="pre">driver=None)</span></code></a></p></li>
<li><p><a class="reference internal" href="#gummy.journals.GummyAbstJournal.get_title_from_pdf" title="gummy.journals.GummyAbstJournal.get_title_from_pdf"><code class="xref py py-meth docutils literal notranslate"><span class="pre">get_title_from_pdf(self,</span> <span class="pre">pdf_gen)</span></code></a></p></li>
<li><p><a class="reference internal" href="#gummy.journals.GummyAbstJournal.get_contents_from_pdf_pages" title="gummy.journals.GummyAbstJournal.get_contents_from_pdf_pages"><code class="xref py py-meth docutils literal notranslate"><span class="pre">get_contents_from_pdf_pages(self,</span> <span class="pre">pdf_pages)</span></code></a></p></li>
</ul>
</dd>
</dl>
</li>
</ul>
<dl class="field-list simple">
<dt class="field-odd">Parameters</dt>
<dd class="field-odd"><ul class="simple">
<li><p><strong>crawl_type</strong> (<em>str</em>) – Crawling type, if you not specify, use recommended crawling type.</p></li>
<li><p><strong>gateway</strong> (<em>str</em><em>, </em><em>GummyGateWay</em>) – identifier of the Gummy Gateway Class. See <a class="reference internal" href="gummy.gateways.html#module-gummy.gateways" title="gummy.gateways"><code class="xref py py-mod docutils literal notranslate"><span class="pre">gateways</span></code></a>. (default= <code class="docutils literal notranslate"><span class="pre">None</span></code> )</p></li>
<li><p><strong>sleep_for_loading</strong> (<em>int</em>) – Number of seconds to wait for a web page to load (default= <code class="docutils literal notranslate"><span class="pre">3</span></code> )</p></li>
<li><p><strong>verbose</strong> (<em>bool</em>) – Whether you want to print output or not. (default= <code class="docutils literal notranslate"><span class="pre">True</span></code> )</p></li>
<li><p><strong>DecomposeTexTags</strong> (<em>list</em>) – Tex tags to be removed in advance for easier analysis. (default= <code class="docutils literal notranslate"><span class="pre">["<cit.>"," ","<ref>"]</span></code> )</p></li>
<li><p><strong>DecomposeSoupTags</strong> (<em>list</em>) – HTML tags to be removed in advance for easier analysis. (default= <code class="docutils literal notranslate"><span class="pre">["i","link","meta","noscript","script","style","sup"]</span></code> )</p></li>
<li><p><strong>subheadTags</strong> (<em>list</em>) – HTML tag names to identify the subheadings.</p></li>
<li><p><strong>kwargs</strong> (<em>dict</em>) – There is no use for it so far.</p></li>
</ul>
</dd>
</dl>
<dl class="py attribute">
<dt id="gummy.journals.GummyAbstJournal.crawling_logs">
<code class="sig-name descname">crawling_logs</code><a class="headerlink" href="#gummy.journals.GummyAbstJournal.crawling_logs" title="Permalink to this definition">¶</a></dt>
<dd><p>Crawling logs.</p>
<dl class="field-list simple">
<dt class="field-odd">Type</dt>
<dd class="field-odd"><p>dict</p>
</dd>
</dl>
</dd></dl>
<dl class="py method">
<dt id="gummy.journals.GummyAbstJournal.class_name">
<em class="property">property </em><code class="sig-name descname">class_name</code><a class="headerlink" href="#gummy.journals.GummyAbstJournal.class_name" title="Permalink to this definition">¶</a></dt>
<dd><p>Same as <code class="docutils literal notranslate"><span class="pre">self.__class__.__name__</span></code>.</p>
</dd></dl>
<dl class="py method">
<dt id="gummy.journals.GummyAbstJournal.name">
<em class="property">property </em><code class="sig-name descname">name</code><a class="headerlink" href="#gummy.journals.GummyAbstJournal.name" title="Permalink to this definition">¶</a></dt>
<dd><p>Translator service name.</p>
</dd></dl>
<dl class="py method">
<dt id="gummy.journals.GummyAbstJournal.journal_type">
<em class="property">property </em><code class="sig-name descname">journal_type</code><a class="headerlink" href="#gummy.journals.GummyAbstJournal.journal_type" title="Permalink to this definition">¶</a></dt>
<dd><p>Journal Type.</p>
</dd></dl>
<dl class="py method">
<dt id="gummy.journals.GummyAbstJournal.default_title">
<em class="property">property </em><code class="sig-name descname">default_title</code><a class="headerlink" href="#gummy.journals.GummyAbstJournal.default_title" title="Permalink to this definition">¶</a></dt>
<dd><p>Default title.</p>
</dd></dl>
<dl class="py method">
<dt id="gummy.journals.GummyAbstJournal.get_contents">
<code class="sig-name descname">get_contents</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">url</span></em>, <em class="sig-param"><span class="n">driver</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">crawl_type</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="o">**</span><span class="n">gatewaykwargs</span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/gummy/journals.html#GummyAbstJournal.get_contents"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#gummy.journals.GummyAbstJournal.get_contents" title="Permalink to this definition">¶</a></dt>
<dd><p>Get contents using the method which is determined based on <code class="docutils literal notranslate"><span class="pre">crawl_type</span></code></p>
<dl class="field-list simple">
<dt class="field-odd">Parameters</dt>
<dd class="field-odd"><ul class="simple">
<li><p><strong>url</strong> (<em>str</em>) – URL of a paper or <code class="docutils literal notranslate"><span class="pre">path/to/local.file</span></code>.</p></li>
<li><p><strong>driver</strong> (<em>WebDriver</em>) – Selenium WebDriver.</p></li>
<li><p><strong>crawl_type</strong> (<em>str</em>) – Crawling type, if you not specify, use recommended crawling type.</p></li>
<li><p><strong>gatewaykwargs</strong> (<em>dict</em>) – Gateway keywargs. See <a class="reference internal" href="gummy.gateways.html#gummy.gateways.GummyAbstGateWay.passthrough" title="gummy.gateways.GummyAbstGateWay.passthrough"><code class="xref py py-meth docutils literal notranslate"><span class="pre">passthrough</span></code></a>.</p></li>
</ul>
</dd>
<dt class="field-even">Returns</dt>
<dd class="field-even"><p>(title, content)</p>
</dd>
<dt class="field-odd">Return type</dt>
<dd class="field-odd"><p>tuple (str, dict)</p>
</dd>
</dl>
<p class="rubric">Examples</p>
<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="kn">from</span> <span class="nn">gummy</span> <span class="kn">import</span> <span class="n">journals</span>
<span class="gp">>>> </span><span class="n">crawler</span> <span class="o">=</span> <span class="n">journals</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">"nature"</span><span class="p">)</span>
<span class="gp">>>> </span><span class="n">title</span><span class="p">,</span> <span class="n">texts</span> <span class="o">=</span> <span class="n">crawler</span><span class="o">.</span><span class="n">get_contents</span><span class="p">(</span><span class="n">url</span><span class="o">=</span><span class="s2">"https://www.nature.com/articles/ncb0800_500"</span><span class="p">)</span>
<span class="go">Crawling Type: soup</span>
<span class="go"> :</span>
<span class="gp">>>> </span><span class="nb">print</span><span class="p">(</span><span class="n">title</span><span class="p">)</span>
<span class="go">Formation of the male-specific muscle in female by ectopic expression</span>
<span class="gp">>>> </span><span class="nb">print</span><span class="p">(</span><span class="n">texts</span><span class="p">[:</span><span class="mi">1</span><span class="p">])</span>
<span class="go">[{'head': 'Abstract', 'raw': 'The () gene product Fru has been ... for the sexually dimorphic actions of the gene.'}]</span>
</pre></div>
</div>
</dd></dl>
<dl class="py method">
<dt id="gummy.journals.GummyAbstJournal.get_soup_url">
<em class="property">static </em><code class="sig-name descname">get_soup_url</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">url</span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/gummy/journals.html#GummyAbstJournal.get_soup_url"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#gummy.journals.GummyAbstJournal.get_soup_url" title="Permalink to this definition">¶</a></dt>
<dd><p>Convert the URL to the URL of the web page you access when <code class="docutils literal notranslate"><span class="pre">crawl_type=="soup"</span></code></p>
</dd></dl>
<dl class="py method">
<dt id="gummy.journals.GummyAbstJournal.get_contents_soup">
<code class="sig-name descname">get_contents_soup</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">url</span></em>, <em class="sig-param"><span class="n">driver</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="o">**</span><span class="n">gatewaykwargs</span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/gummy/journals.html#GummyAbstJournal.get_contents_soup"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#gummy.journals.GummyAbstJournal.get_contents_soup" title="Permalink to this definition">¶</a></dt>
<dd><p>Get contents from url of the web page using <code class="docutils literal notranslate"><span class="pre">BeautifulSoup</span></code>.</p>
<dl class="field-list simple">
<dt class="field-odd">Parameters</dt>
<dd class="field-odd"><ul class="simple">
<li><p><strong>url</strong> (<em>str</em>) – URL of a paper.</p></li>
<li><p><strong>driver</strong> (<em>WebDriver</em>) – Selenium WebDriver.</p></li>
<li><p><strong>gatewaykwargs</strong> (<em>dict</em>) – Gateway keywargs. See <a class="reference internal" href="gummy.gateways.html#gummy.gateways.GummyAbstGateWay.passthrough" title="gummy.gateways.GummyAbstGateWay.passthrough"><code class="xref py py-meth docutils literal notranslate"><span class="pre">passthrough</span></code></a>.</p></li>
</ul>
</dd>
<dt class="field-even">Returns</dt>
<dd class="field-even"><p>(title, content)</p>
</dd>
<dt class="field-odd">Return type</dt>
<dd class="field-odd"><p>tuple (str, dict)</p>
</dd>
</dl>
</dd></dl>
<dl class="py method">
<dt id="gummy.journals.GummyAbstJournal.get_soup_source">
<code class="sig-name descname">get_soup_source</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">url</span></em>, <em class="sig-param"><span class="n">driver</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="o">**</span><span class="n">gatewaykwargs</span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/gummy/journals.html#GummyAbstJournal.get_soup_source"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#gummy.journals.GummyAbstJournal.get_soup_source" title="Permalink to this definition">¶</a></dt>
<dd><p>Scrape and get page source from <code class="docutils literal notranslate"><span class="pre">url</span></code>.</p>
<dl class="field-list simple">
<dt class="field-odd">Parameters</dt>
<dd class="field-odd"><ul class="simple">
<li><p><strong>url</strong> (<em>str</em>) – URL of a paper.</p></li>
<li><p><strong>driver</strong> (<em>WebDriver</em>) – webdriver</p></li>
<li><p><strong>gatewaykwargs</strong> (<em>dict</em>) – Gateway keywargs. See <a class="reference internal" href="gummy.gateways.html#gummy.gateways.GummyAbstGateWay.passthrough" title="gummy.gateways.GummyAbstGateWay.passthrough"><code class="xref py py-meth docutils literal notranslate"><span class="pre">passthrough</span></code></a>.</p></li>
</ul>
</dd>
<dt class="field-even">Returns</dt>
<dd class="field-even"><p>A data structure representing a parsed HTML or XML document.</p>
</dd>
<dt class="field-odd">Return type</dt>
<dd class="field-odd"><p>BeautifulSoup</p>
</dd>
</dl>
</dd></dl>
<dl class="py method">
<dt id="gummy.journals.GummyAbstJournal.make_elements_visible">
<code class="sig-name descname">make_elements_visible</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">driver</span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/gummy/journals.html#GummyAbstJournal.make_elements_visible"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#gummy.journals.GummyAbstJournal.make_elements_visible" title="Permalink to this definition">¶</a></dt>
<dd><p>Make all elements of the page visible.</p>
<dl class="field-list simple">
<dt class="field-odd">Parameters</dt>
<dd class="field-odd"><p><strong>driver</strong> (<em>WebDriver</em>) – Selenium WebDriver.</p>
</dd>
</dl>
</dd></dl>
<dl class="py method">
<dt id="gummy.journals.GummyAbstJournal.decompose_soup_tags">
<code class="sig-name descname">decompose_soup_tags</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">soup</span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/gummy/journals.html#GummyAbstJournal.decompose_soup_tags"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#gummy.journals.GummyAbstJournal.decompose_soup_tags" title="Permalink to this definition">¶</a></dt>
<dd><p>This function is not necessary for all Journals, but you can trim
<code class="docutils literal notranslate"><span class="pre">DecomposeSoupTags</span></code> from the soup and it will help with debugging.</p>
<dl class="field-list simple">
<dt class="field-odd">Parameters</dt>
<dd class="field-odd"><p><strong>soup</strong> (<em>BeautifulSoup</em>) – A data structure representing a parsed HTML or XML document.</p>
</dd>
<dt class="field-even">Returns</dt>
<dd class="field-even"><p>soup, a dict showing the number of decomposed tags.</p>
</dd>
<dt class="field-odd">Return type</dt>
<dd class="field-odd"><p>tuple (BeautifulSoup, dict)</p>
</dd>
</dl>
</dd></dl>
<dl class="py method">
<dt id="gummy.journals.GummyAbstJournal.register_decompose_soup_tags">
<code class="sig-name descname">register_decompose_soup_tags</code><span class="sig-paren">(</span><em class="sig-param"><span class="o">**</span><span class="n">kwargs</span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/gummy/journals.html#GummyAbstJournal.register_decompose_soup_tags"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#gummy.journals.GummyAbstJournal.register_decompose_soup_tags" title="Permalink to this definition">¶</a></dt>
<dd><p>Register <code class="docutils literal notranslate"><span class="pre">DecomposeSoupTags</span></code></p>
<dl class="field-list simple">
<dt class="field-odd">Parameters</dt>
<dd class="field-odd"><p><strong>**kwargs</strong> – Kwargs for <code class="docutils literal notranslate"><span class="pre">soup.find</span></code> method.</p>
</dd>
</dl>
</dd></dl>
<dl class="py method">
<dt id="gummy.journals.GummyAbstJournal.get_title_from_soup">
<code class="sig-name descname">get_title_from_soup</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">soup</span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/gummy/journals.html#GummyAbstJournal.get_title_from_soup"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#gummy.journals.GummyAbstJournal.get_title_from_soup" title="Permalink to this definition">¶</a></dt>
<dd><p>Get page title from page source.</p>
<dl class="field-list simple">
<dt class="field-odd">Parameters</dt>
<dd class="field-odd"><p><strong>soup</strong> (<em>BeautifulSoup</em>) – A data structure representing a parsed HTML or XML document.)</p>
</dd>
<dt class="field-even">Returns</dt>
<dd class="field-even"><p>A page title.</p>
</dd>
<dt class="field-odd">Return type</dt>
<dd class="field-odd"><p>str</p>
</dd>
</dl>
</dd></dl>
<dl class="py method">
<dt id="gummy.journals.GummyAbstJournal.get_sections_from_soup">
<code class="sig-name descname">get_sections_from_soup</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">soup</span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/gummy/journals.html#GummyAbstJournal.get_sections_from_soup"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#gummy.journals.GummyAbstJournal.get_sections_from_soup" title="Permalink to this definition">¶</a></dt>
<dd><p>Get sections from page source.</p>
<dl class="field-list simple">
<dt class="field-odd">Parameters</dt>
<dd class="field-odd"><p><strong>soup</strong> (<em>BeautifulSoup</em>) – A data structure representing a parsed HTML or XML document.)</p>
</dd>
<dt class="field-even">Returns</dt>
<dd class="field-even"><p>Page sections. Each element is (bs4.element.Tag)</p>
</dd>
<dt class="field-odd">Return type</dt>
<dd class="field-odd"><p>list</p>
</dd>
</dl>
</dd></dl>
<dl class="py method">
<dt id="gummy.journals.GummyAbstJournal.get_head_from_section">
<code class="sig-name descname">get_head_from_section</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">section</span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/gummy/journals.html#GummyAbstJournal.get_head_from_section"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#gummy.journals.GummyAbstJournal.get_head_from_section" title="Permalink to this definition">¶</a></dt>
<dd><p>Get head from a page section.</p>
<dl class="field-list simple">
<dt class="field-odd">Parameters</dt>
<dd class="field-odd"><p><strong>section</strong> (<em>bs4.element.Tag</em>) – Represents an HTML or XML tag that is part of a parse tree, along with its attributes and contents.</p>
</dd>
<dt class="field-even">Returns</dt>
<dd class="field-even"><p>A section head tag.</p>
</dd>
<dt class="field-odd">Return type</dt>
<dd class="field-odd"><p>bs4.element.Tag</p>
</dd>
</dl>
</dd></dl>
<dl class="py method">
<dt id="gummy.journals.GummyAbstJournal.get_contents_from_soup_sections">
<code class="sig-name descname">get_contents_from_soup_sections</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">soup_sections</span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/gummy/journals.html#GummyAbstJournal.get_contents_from_soup_sections"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#gummy.journals.GummyAbstJournal.get_contents_from_soup_sections" title="Permalink to this definition">¶</a></dt>
<dd><p>Get contents from each soup section.</p>
<dl class="field-list simple">
<dt class="field-odd">Parameters</dt>
<dd class="field-odd"><p><strong>soup_sections</strong> (<em>list</em>) – Each element is (bs4.element.Tag).</p>
</dd>
<dt class="field-even">Returns</dt>
<dd class="field-even"><p>Each element is <code class="docutils literal notranslate"><span class="pre">dict</span></code> (key is one of the <code class="docutils literal notranslate"><span class="pre">["raw",</span> <span class="pre">"head",</span> <span class="pre">"subhead",</span> <span class="pre">"img"]</span></code>).</p>
</dd>
<dt class="field-odd">Return type</dt>
<dd class="field-odd"><p>list</p>
</dd>
</dl>
</dd></dl>
<dl class="py method">
<dt id="gummy.journals.GummyAbstJournal.organize_soup_section">
<code class="sig-name descname">organize_soup_section</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">section</span></em>, <em class="sig-param"><span class="n">head</span><span class="o">=</span><span class="default_value">''</span></em>, <em class="sig-param"><span class="n">head_is_not_added</span><span class="o">=</span><span class="default_value">True</span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/gummy/journals.html#GummyAbstJournal.organize_soup_section"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#gummy.journals.GummyAbstJournal.organize_soup_section" title="Permalink to this definition">¶</a></dt>
<dd><p>Organize soup section:</p>
<ul class="simple">
<li><p>Extract an image and display it as <code class="docutils literal notranslate"><span class="pre">base64</span></code> format in the section.</p></li>
<li><p>Add <code class="docutils literal notranslate"><span class="pre">head</span></code> only to the initial content.</p></li>
</ul>
<dl class="field-list simple">
<dt class="field-odd">Parameters</dt>
<dd class="field-odd"><ul class="simple">
<li><p><strong>section</strong> (<em>bs4.element.Tag</em>) – Represents an HTML or XML tag that is part of a parse tree, along with its attributes and contents.</p></li>
<li><p><strong>head</strong> (<em>str</em>) – Head word.</p></li>
<li><p><strong>head_is_not_added</strong> (<em>bool</em>) – Whether head is added or not. (default= <code class="docutils literal notranslate"><span class="pre">True</span></code>)</p></li>
</ul>
</dd>
</dl>
</dd></dl>
<dl class="py method">
<dt id="gummy.journals.GummyAbstJournal.arrange_english">
<em class="property">static </em><code class="sig-name descname">arrange_english</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">english</span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/gummy/journals.html#GummyAbstJournal.arrange_english"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#gummy.journals.GummyAbstJournal.arrange_english" title="Permalink to this definition">¶</a></dt>
<dd><p>Get rid of extra characters from body (english). This method is used in <code class="xref py py-meth docutils literal notranslate"><span class="pre">arrange_english</span></code>.</p>
<dl class="field-list simple">
<dt class="field-odd">Parameters</dt>
<dd class="field-odd"><p><strong>english</strong> (<em>str</em>) – Raw English.</p>
</dd>
<dt class="field-even">Returns</dt>
<dd class="field-even"><p>Arranged English</p>
</dd>
<dt class="field-odd">Return type</dt>
<dd class="field-odd"><p>str</p>
</dd>
</dl>
</dd></dl>
<dl class="py method">
<dt id="gummy.journals.GummyAbstJournal.get_tex_url">
<em class="property">static </em><code class="sig-name descname">get_tex_url</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">url</span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/gummy/journals.html#GummyAbstJournal.get_tex_url"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#gummy.journals.GummyAbstJournal.get_tex_url" title="Permalink to this definition">¶</a></dt>
<dd><p>Convert the URL to the URL of the tex page you access when <code class="docutils literal notranslate"><span class="pre">crawl_type=="tex"</span></code></p>
</dd></dl>
<dl class="py method">
<dt id="gummy.journals.GummyAbstJournal.get_contents_tex">
<code class="sig-name descname">get_contents_tex</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">url</span></em>, <em class="sig-param"><span class="n">driver</span><span class="o">=</span><span class="default_value">None</span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/gummy/journals.html#GummyAbstJournal.get_contents_tex"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#gummy.journals.GummyAbstJournal.get_contents_tex" title="Permalink to this definition">¶</a></dt>
<dd><p>Get contents from url by parsing TeX sources.</p>
<dl class="field-list simple">
<dt class="field-odd">Parameters</dt>
<dd class="field-odd"><ul class="simple">
<li><p><strong>url</strong> – (str) URL of a paper.</p></li>
<li><p><strong>driver</strong> – (WebDriver) webdriver</p></li>
<li><p><strong>gatewaykwargs</strong> (<em>dict</em>) – Gateway keywargs. See <a class="reference internal" href="gummy.gateways.html#gummy.gateways.GummyAbstGateWay.passthrough" title="gummy.gateways.GummyAbstGateWay.passthrough"><code class="xref py py-meth docutils literal notranslate"><span class="pre">passthrough</span></code></a>.</p></li>
</ul>
</dd>
<dt class="field-even">Returns</dt>
<dd class="field-even"><p>(title, content)</p>
</dd>
<dt class="field-odd">Return type</dt>
<dd class="field-odd"><p>tuple (str, dict)</p>
</dd>
</dl>
</dd></dl>
<dl class="py method">
<dt id="gummy.journals.GummyAbstJournal.get_tex_source">
<code class="sig-name descname">get_tex_source</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">url</span></em>, <em class="sig-param"><span class="n">driver</span><span class="o">=</span><span class="default_value">None</span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/gummy/journals.html#GummyAbstJournal.get_tex_source"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#gummy.journals.GummyAbstJournal.get_tex_source" title="Permalink to this definition">¶</a></dt>
<dd><p>Download and get tex source from url.</p>
<dl class="field-list simple">
<dt class="field-odd">Parameters</dt>
<dd class="field-odd"><ul class="simple">
<li><p><strong>url</strong> (<em>str</em>) – URL of a tex source or <code class="docutils literal notranslate"><span class="pre">path/to/local.tex</span></code>.</p></li>
<li><p><strong>driver</strong> (<em>WebDriver</em>) – Selenium WebDriver.</p></li>
</ul>
</dd>
<dt class="field-even">Returns</dt>
<dd class="field-even"><p>Plain text in tex source.</p>
</dd>
<dt class="field-odd">Return type</dt>
<dd class="field-odd"><p>str</p>
</dd>
</dl>
</dd></dl>
<dl class="py method">
<dt id="gummy.journals.GummyAbstJournal.get_title_from_tex">
<code class="sig-name descname">get_title_from_tex</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">tex</span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/gummy/journals.html#GummyAbstJournal.get_title_from_tex"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#gummy.journals.GummyAbstJournal.get_title_from_tex" title="Permalink to this definition">¶</a></dt>
<dd><p>Get a title from tex source.</p>
<dl class="field-list simple">
<dt class="field-odd">Parameters</dt>
<dd class="field-odd"><p><strong>tex</strong> (<em>str</em>) – Plain text in tex source.</p>
</dd>
<dt class="field-even">Returns</dt>
<dd class="field-even"><p>TeX title.</p>
</dd>
<dt class="field-odd">Return type</dt>
<dd class="field-odd"><p>str</p>
</dd>
</dl>
</dd></dl>
<dl class="py method">
<dt id="gummy.journals.GummyAbstJournal.get_sections_from_tex">
<code class="sig-name descname">get_sections_from_tex</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">tex</span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/gummy/journals.html#GummyAbstJournal.get_sections_from_tex"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#gummy.journals.GummyAbstJournal.get_sections_from_tex" title="Permalink to this definition">¶</a></dt>
<dd><p>Get sections from tex source.</p>
<dl class="field-list simple">
<dt class="field-odd">Parameters</dt>
<dd class="field-odd"><p><strong>tex</strong> (<em>str</em>) – Plain text in tex source.</p>
</dd>
<dt class="field-even">Returns</dt>
<dd class="field-even"><p>Each element is plain text (str)</p>
</dd>
<dt class="field-odd">Return type</dt>
<dd class="field-odd"><p>list</p>
</dd>
</dl>
</dd></dl>
<dl class="py method">
<dt id="gummy.journals.GummyAbstJournal.get_contents_from_tex_sections">
<code class="sig-name descname">get_contents_from_tex_sections</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">tex_sections</span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/gummy/journals.html#GummyAbstJournal.get_contents_from_tex_sections"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#gummy.journals.GummyAbstJournal.get_contents_from_tex_sections" title="Permalink to this definition">¶</a></dt>
<dd><p>Get text for each tex section.</p>
<dl class="field-list simple">
<dt class="field-odd">Parameters</dt>
<dd class="field-odd"><p><strong>tex_sections</strong> – (list) Each element is plain text (str).</p>
</dd>
<dt class="field-even">Returns</dt>
<dd class="field-even"><p>Each element is <code class="docutils literal notranslate"><span class="pre">dict</span></code> (key is one of the <code class="docutils literal notranslate"><span class="pre">["raw",</span> <span class="pre">"head",</span> <span class="pre">"subhead",</span> <span class="pre">"img"]</span></code>).</p>
</dd>
<dt class="field-odd">Return type</dt>
<dd class="field-odd"><p>(list)</p>
</dd>
</dl>
</dd></dl>
<dl class="py method">
<dt id="gummy.journals.GummyAbstJournal.get_pdf_url">
<em class="property">static </em><code class="sig-name descname">get_pdf_url</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">url</span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/gummy/journals.html#GummyAbstJournal.get_pdf_url"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#gummy.journals.GummyAbstJournal.get_pdf_url" title="Permalink to this definition">¶</a></dt>
<dd><p>Convert the URL to the URL of the PDF page you access when <code class="docutils literal notranslate"><span class="pre">crawl_type=="pdf"</span></code></p>
</dd></dl>
<dl class="py method">
<dt id="gummy.journals.GummyAbstJournal.get_contents_pdf">
<code class="sig-name descname">get_contents_pdf</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">url</span></em>, <em class="sig-param"><span class="n">driver</span><span class="o">=</span><span class="default_value">None</span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/gummy/journals.html#GummyAbstJournal.get_contents_pdf"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#gummy.journals.GummyAbstJournal.get_contents_pdf" title="Permalink to this definition">¶</a></dt>
<dd><p>Get contents from url by parsing PDF file.</p>
<dl class="field-list simple">
<dt class="field-odd">Parameters</dt>
<dd class="field-odd"><ul class="simple">
<li><p><strong>url</strong> (<em>str</em>) – URL of a paper or <code class="docutils literal notranslate"><span class="pre">path/to/local.pdf</span></code>.</p></li>
<li><p><strong>driver</strong> (<em>WebDriver</em>) – Selenium WebDriver.</p></li>
<li><p><strong>gatewaykwargs</strong> (<em>dict</em>) – Gateway keywargs. See <a class="reference internal" href="gummy.gateways.html#gummy.gateways.GummyAbstGateWay.passthrough" title="gummy.gateways.GummyAbstGateWay.passthrough"><code class="xref py py-meth docutils literal notranslate"><span class="pre">passthrough</span></code></a>.</p></li>
</ul>
</dd>
<dt class="field-even">Returns</dt>
<dd class="field-even"><p>(title, content)</p>
</dd>
<dt class="field-odd">Return type</dt>
<dd class="field-odd"><p>tuple (str, dict)</p>
</dd>
</dl>
</dd></dl>
<dl class="py method">
<dt id="gummy.journals.GummyAbstJournal.get_pdf_source">
<code class="sig-name descname">get_pdf_source</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">url</span></em>, <em class="sig-param"><span class="n">driver</span><span class="o">=</span><span class="default_value">None</span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/gummy/journals.html#GummyAbstJournal.get_pdf_source"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#gummy.journals.GummyAbstJournal.get_pdf_source" title="Permalink to this definition">¶</a></dt>
<dd><p>Download and get PDF source from url.</p>
<dl class="field-list simple">
<dt class="field-odd">Parameters</dt>
<dd class="field-odd"><ul class="simple">
<li><p><strong>url</strong> (<em>str</em>) – URL of a PDF file or <code class="docutils literal notranslate"><span class="pre">path/to/local.pdf</span></code>.</p></li>
<li><p><strong>driver</strong> (<em>WebDriver</em>) – Selenium WebDriver.</p></li>
</ul>
</dd>
<dt class="field-even">Returns</dt>
<dd class="field-even"><p>Each element is a list which contains [text, bbox(x0,y0,x1,y1)]</p>
</dd>
<dt class="field-odd">Return type</dt>
<dd class="field-odd"><p>list</p>
</dd>
</dl>
</dd></dl>
<dl class="py method">
<dt id="gummy.journals.GummyAbstJournal.get_title_from_pdf">
<code class="sig-name descname">get_title_from_pdf</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">pdf_pages</span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/gummy/journals.html#GummyAbstJournal.get_title_from_pdf"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#gummy.journals.GummyAbstJournal.get_title_from_pdf" title="Permalink to this definition">¶</a></dt>
<dd><p>Get title from PDF source.</p>
<dl class="field-list simple">
<dt class="field-odd">Parameters</dt>
<dd class="field-odd"><p><strong>pdf_pages</strong> (<em>list</em>) – Each element is a list which contains [text, bbox(x0,y0,x1,y1)]</p>
</dd>
<dt class="field-even">Returns</dt>
<dd class="field-even"><p>PDF title.</p>
</dd>
<dt class="field-odd">Return type</dt>
<dd class="field-odd"><p>str</p>
</dd>
</dl>
</dd></dl>
<dl class="py method">
<dt id="gummy.journals.GummyAbstJournal.get_contents_from_pdf_pages">
<code class="sig-name descname">get_contents_from_pdf_pages</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">pdf_pages</span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/gummy/journals.html#GummyAbstJournal.get_contents_from_pdf_pages"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#gummy.journals.GummyAbstJournal.get_contents_from_pdf_pages" title="Permalink to this definition">¶</a></dt>
<dd><p>Get contents from each page.</p>
<dl class="field-list simple">
<dt class="field-odd">Parameters</dt>
<dd class="field-odd"><p><strong>pdf_pages</strong> (<em>list</em>) – Each element is a list which contains [text, bbox(x0,y0,x1,y1)]</p>
</dd>
<dt class="field-even">Returns</dt>
<dd class="field-even"><p>(title, content)</p>
</dd>
<dt class="field-odd">Return type</dt>
<dd class="field-odd"><p>tuple (str, dict)</p>
</dd>
</dl>
</dd></dl>
</dd></dl>
<dl class="py class">
<dt id="gummy.journals.PDFCrawler">
<em class="property">class </em><code class="sig-prename descclassname">gummy.journals.</code><code class="sig-name descname">PDFCrawler</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">gateway</span><span class="o">=</span><span class="default_value">'useless'</span></em>, <em class="sig-param"><span class="n">sleep_for_loading</span><span class="o">=</span><span class="default_value">3</span></em>, <em class="sig-param"><span class="n">verbose</span><span class="o">=</span><span class="default_value">True</span></em>, <em class="sig-param"><span class="o">**</span><span class="n">kwargs</span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/gummy/journals.html#PDFCrawler"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#gummy.journals.PDFCrawler" title="Permalink to this definition">¶</a></dt>
<dd><p>Bases: <a class="reference internal" href="#gummy.journals.GummyAbstJournal" title="gummy.journals.GummyAbstJournal"><code class="xref py py-class docutils literal notranslate"><span class="pre">gummy.journals.GummyAbstJournal</span></code></a></p>
<dl class="py method">
<dt id="gummy.journals.PDFCrawler.get_soup_url">
<em class="property">static </em><code class="sig-name descname">get_soup_url</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">url</span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/gummy/journals.html#PDFCrawler.get_soup_url"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#gummy.journals.PDFCrawler.get_soup_url" title="Permalink to this definition">¶</a></dt>
<dd><p>Convert the URL to the URL of the web page you access when <code class="docutils literal notranslate"><span class="pre">crawl_type=="soup"</span></code></p>
</dd></dl>
<dl class="py method">
<dt id="gummy.journals.PDFCrawler.get_pdf_url">
<em class="property">static </em><code class="sig-name descname">get_pdf_url</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">url</span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/gummy/journals.html#PDFCrawler.get_pdf_url"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#gummy.journals.PDFCrawler.get_pdf_url" title="Permalink to this definition">¶</a></dt>
<dd><p>Convert the URL to the URL of the PDF page you access when <code class="docutils literal notranslate"><span class="pre">crawl_type=="pdf"</span></code></p>
</dd></dl>
<dl class="py method">
<dt id="gummy.journals.PDFCrawler.get_contents_pdf">
<code class="sig-name descname">get_contents_pdf</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">url</span></em>, <em class="sig-param"><span class="n">driver</span><span class="o">=</span><span class="default_value">None</span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/gummy/journals.html#PDFCrawler.get_contents_pdf"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#gummy.journals.PDFCrawler.get_contents_pdf" title="Permalink to this definition">¶</a></dt>
<dd><p>Get contents from url by parsing PDF file.</p>
<dl class="field-list simple">
<dt class="field-odd">Parameters</dt>
<dd class="field-odd"><ul class="simple">
<li><p><strong>url</strong> (<em>str</em>) – URL of a paper or <code class="docutils literal notranslate"><span class="pre">path/to/local.pdf</span></code>.</p></li>
<li><p><strong>driver</strong> (<em>WebDriver</em>) – Selenium WebDriver.</p></li>
<li><p><strong>gatewaykwargs</strong> (<em>dict</em>) – Gateway keywargs. See <a class="reference internal" href="gummy.gateways.html#gummy.gateways.GummyAbstGateWay.passthrough" title="gummy.gateways.GummyAbstGateWay.passthrough"><code class="xref py py-meth docutils literal notranslate"><span class="pre">passthrough</span></code></a>.</p></li>
</ul>
</dd>
<dt class="field-even">Returns</dt>
<dd class="field-even"><p>(title, content)</p>
</dd>
<dt class="field-odd">Return type</dt>
<dd class="field-odd"><p>tuple (str, dict)</p>
</dd>
</dl>
</dd></dl>
</dd></dl>
<dl class="py class">
<dt id="gummy.journals.NatureCrawler">
<em class="property">class </em><code class="sig-prename descclassname">gummy.journals.</code><code class="sig-name descname">NatureCrawler</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">gateway</span><span class="o">=</span><span class="default_value">'useless'</span></em>, <em class="sig-param"><span class="n">sleep_for_loading</span><span class="o">=</span><span class="default_value">3</span></em>, <em class="sig-param"><span class="n">verbose</span><span class="o">=</span><span class="default_value">True</span></em>, <em class="sig-param"><span class="o">**</span><span class="n">kwargs</span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/gummy/journals.html#NatureCrawler"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#gummy.journals.NatureCrawler" title="Permalink to this definition">¶</a></dt>
<dd><p>Bases: <a class="reference internal" href="#gummy.journals.GummyAbstJournal" title="gummy.journals.GummyAbstJournal"><code class="xref py py-class docutils literal notranslate"><span class="pre">gummy.journals.GummyAbstJournal</span></code></a></p>
<dl class="simple">
<dt>URL:</dt><dd><ul class="simple">
<li><p><a class="reference external" href="https://www.nature.com">https://www.nature.com</a></p></li>
</ul>
</dd>
</dl>
<dl class="py attribute">
<dt id="gummy.journals.NatureCrawler.crawl_type">
<code class="sig-name descname">crawl_type</code><a class="headerlink" href="#gummy.journals.NatureCrawler.crawl_type" title="Permalink to this definition">¶</a></dt>
<dd><p><a class="reference internal" href="#gummy.journals.NatureCrawler" title="gummy.journals.NatureCrawler"><code class="xref py py-meth docutils literal notranslate"><span class="pre">NatureCrawler's</span></code></a> default <code class="docutils literal notranslate"><span class="pre">crawl_type</span></code> is <code class="docutils literal notranslate"><span class="pre">"soup"</span></code>.</p>
<dl class="field-list simple">
<dt class="field-odd">Type</dt>
<dd class="field-odd"><p>str</p>
</dd>
</dl>
</dd></dl>
<dl class="py attribute">
<dt id="gummy.journals.NatureCrawler.AvoidAriaLabel">
<code class="sig-name descname">AvoidAriaLabel</code><a class="headerlink" href="#gummy.journals.NatureCrawler.AvoidAriaLabel" title="Permalink to this definition">¶</a></dt>
<dd><p>Markers indicating the extra section to remove in <a class="reference internal" href="#gummy.journals.NatureCrawler.get_sections_from_soup" title="gummy.journals.NatureCrawler.get_sections_from_soup"><code class="xref py py-meth docutils literal notranslate"><span class="pre">get_sections_from_soup</span></code></a></p>
<dl class="field-list simple">
<dt class="field-odd">Type</dt>
<dd class="field-odd"><p>list</p>
</dd>
</dl>
</dd></dl>
<dl class="py method">
<dt id="gummy.journals.NatureCrawler.get_title_from_soup">
<code class="sig-name descname">get_title_from_soup</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">soup</span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/gummy/journals.html#NatureCrawler.get_title_from_soup"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#gummy.journals.NatureCrawler.get_title_from_soup" title="Permalink to this definition">¶</a></dt>
<dd><p>Get page title from page source.</p>
<dl class="field-list simple">
<dt class="field-odd">Parameters</dt>
<dd class="field-odd"><p><strong>soup</strong> (<em>BeautifulSoup</em>) – A data structure representing a parsed HTML or XML document.)</p>
</dd>
<dt class="field-even">Returns</dt>
<dd class="field-even"><p>A page title.</p>
</dd>
<dt class="field-odd">Return type</dt>
<dd class="field-odd"><p>str</p>
</dd>
</dl>
</dd></dl>
<dl class="py method">
<dt id="gummy.journals.NatureCrawler.get_sections_from_soup">
<code class="sig-name descname">get_sections_from_soup</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">soup</span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/gummy/journals.html#NatureCrawler.get_sections_from_soup"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#gummy.journals.NatureCrawler.get_sections_from_soup" title="Permalink to this definition">¶</a></dt>
<dd><p>Get sections from page source.</p>
<dl class="field-list simple">
<dt class="field-odd">Parameters</dt>
<dd class="field-odd"><p><strong>soup</strong> (<em>BeautifulSoup</em>) – A data structure representing a parsed HTML or XML document.)</p>
</dd>
<dt class="field-even">Returns</dt>
<dd class="field-even"><p>Page sections. Each element is (bs4.element.Tag)</p>
</dd>
<dt class="field-odd">Return type</dt>
<dd class="field-odd"><p>list</p>
</dd>
</dl>
</dd></dl>
<dl class="py method">
<dt id="gummy.journals.NatureCrawler.get_head_from_section">
<code class="sig-name descname">get_head_from_section</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">section</span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/gummy/journals.html#NatureCrawler.get_head_from_section"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#gummy.journals.NatureCrawler.get_head_from_section" title="Permalink to this definition">¶</a></dt>
<dd><p>Get head from a page section.</p>
<dl class="field-list simple">
<dt class="field-odd">Parameters</dt>
<dd class="field-odd"><p><strong>section</strong> (<em>bs4.element.Tag</em>) – Represents an HTML or XML tag that is part of a parse tree, along with its attributes and contents.</p>
</dd>
<dt class="field-even">Returns</dt>
<dd class="field-even"><p>A section head tag.</p>
</dd>
<dt class="field-odd">Return type</dt>
<dd class="field-odd"><p>bs4.element.Tag</p>
</dd>
</dl>
</dd></dl>
</dd></dl>
<dl class="py class">
<dt id="gummy.journals.arXivCrawler">
<em class="property">class </em><code class="sig-prename descclassname">gummy.journals.</code><code class="sig-name descname">arXivCrawler</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">sleep_for_loading</span><span class="o">=</span><span class="default_value">3</span></em>, <em class="sig-param"><span class="n">verbose</span><span class="o">=</span><span class="default_value">True</span></em>, <em class="sig-param"><span class="o">**</span><span class="n">kwargs</span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/gummy/journals.html#arXivCrawler"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#gummy.journals.arXivCrawler" title="Permalink to this definition">¶</a></dt>
<dd><p>Bases: <a class="reference internal" href="#gummy.journals.GummyAbstJournal" title="gummy.journals.GummyAbstJournal"><code class="xref py py-class docutils literal notranslate"><span class="pre">gummy.journals.GummyAbstJournal</span></code></a></p>
<dl class="simple">
<dt>URL:</dt><dd><ul class="simple">
<li><p><a class="reference external" href="https://arxiv.org">https://arxiv.org</a></p></li>
</ul>
</dd>
</dl>
<dl class="py attribute">
<dt id="gummy.journals.arXivCrawler.crawl_type">
<code class="sig-name descname">crawl_type</code><a class="headerlink" href="#gummy.journals.arXivCrawler.crawl_type" title="Permalink to this definition">¶</a></dt>
<dd><p><a class="reference internal" href="#gummy.journals.arXivCrawler" title="gummy.journals.arXivCrawler"><code class="xref py py-meth docutils literal notranslate"><span class="pre">arXivCrawler's</span></code></a> default <code class="docutils literal notranslate"><span class="pre">crawl_type</span></code> is <code class="docutils literal notranslate"><span class="pre">"pdf"</span></code>.</p>
<dl class="field-list simple">
<dt class="field-odd">Type</dt>
<dd class="field-odd"><p>str</p>
</dd>
</dl>
</dd></dl>
<dl class="py attribute">
<dt id="gummy.journals.arXivCrawler.AvoidAriaLabel">
<code class="sig-name descname">AvoidAriaLabel</code><a class="headerlink" href="#gummy.journals.arXivCrawler.AvoidAriaLabel" title="Permalink to this definition">¶</a></dt>
<dd><p>Markers indicating the extra section to remove in <code class="xref py py-meth docutils literal notranslate"><span class="pre">get_sections_from_pdf</span></code></p>
<dl class="field-list simple">
<dt class="field-odd">Type</dt>
<dd class="field-odd"><p>list</p>
</dd>
</dl>
</dd></dl>
<dl class="py method">
<dt id="gummy.journals.arXivCrawler.get_pdf_url">
<em class="property">static </em><code class="sig-name descname">get_pdf_url</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">url</span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/gummy/journals.html#arXivCrawler.get_pdf_url"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#gummy.journals.arXivCrawler.get_pdf_url" title="Permalink to this definition">¶</a></dt>
<dd><p>Convert the URL to the URL of the PDF page you access when <code class="docutils literal notranslate"><span class="pre">crawl_type=="pdf"</span></code></p>
</dd></dl>
<dl class="py method">
<dt id="gummy.journals.arXivCrawler.get_soup_url">
<em class="property">static </em><code class="sig-name descname">get_soup_url</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">url</span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/gummy/journals.html#arXivCrawler.get_soup_url"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#gummy.journals.arXivCrawler.get_soup_url" title="Permalink to this definition">¶</a></dt>
<dd><p>Convert the URL to the URL of the web page you access when <code class="docutils literal notranslate"><span class="pre">crawl_type=="soup"</span></code></p>
</dd></dl>
<dl class="py method">
<dt id="gummy.journals.arXivCrawler.get_tex_url">
<em class="property">static </em><code class="sig-name descname">get_tex_url</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">url</span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/gummy/journals.html#arXivCrawler.get_tex_url"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#gummy.journals.arXivCrawler.get_tex_url" title="Permalink to this definition">¶</a></dt>
<dd><p>Convert the URL to the URL of the tex page you access when <code class="docutils literal notranslate"><span class="pre">crawl_type=="tex"</span></code></p>
</dd></dl>
<dl class="py method">
<dt id="gummy.journals.arXivCrawler.get_arXivNo">
<em class="property">static </em><code class="sig-name descname">get_arXivNo</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">url</span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/gummy/journals.html#arXivCrawler.get_arXivNo"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#gummy.journals.arXivCrawler.get_arXivNo" title="Permalink to this definition">¶</a></dt>
<dd></dd></dl>
<dl class="py method">
<dt id="gummy.journals.arXivCrawler.get_sections_from_tex">
<code class="sig-name descname">get_sections_from_tex</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">tex</span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/gummy/journals.html#arXivCrawler.get_sections_from_tex"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#gummy.journals.arXivCrawler.get_sections_from_tex" title="Permalink to this definition">¶</a></dt>
<dd><p>Get sections from tex source.</p>
<dl class="field-list simple">
<dt class="field-odd">Parameters</dt>
<dd class="field-odd"><p><strong>tex</strong> (<em>str</em>) – Plain text in tex source.</p>
</dd>
<dt class="field-even">Returns</dt>
<dd class="field-even"><p>Each element is plain text (str)</p>
</dd>
<dt class="field-odd">Return type</dt>
<dd class="field-odd"><p>list</p>
</dd>
</dl>
</dd></dl>
<dl class="py method">
<dt id="gummy.journals.arXivCrawler.get_title_from_soup">
<code class="sig-name descname">get_title_from_soup</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">soup</span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/gummy/journals.html#arXivCrawler.get_title_from_soup"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#gummy.journals.arXivCrawler.get_title_from_soup" title="Permalink to this definition">¶</a></dt>
<dd><p>Get page title from page source.</p>
<dl class="field-list simple">
<dt class="field-odd">Parameters</dt>
<dd class="field-odd"><p><strong>soup</strong> (<em>BeautifulSoup</em>) – A data structure representing a parsed HTML or XML document.)</p>
</dd>
<dt class="field-even">Returns</dt>
<dd class="field-even"><p>A page title.</p>
</dd>
<dt class="field-odd">Return type</dt>
<dd class="field-odd"><p>str</p>
</dd>
</dl>
</dd></dl>
</dd></dl>
<dl class="py class">
<dt id="gummy.journals.NCBICrawler">
<em class="property">class </em><code class="sig-prename descclassname">gummy.journals.</code><code class="sig-name descname">NCBICrawler</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">gateway</span><span class="o">=</span><span class="default_value">'useless'</span></em>, <em class="sig-param"><span class="n">sleep_for_loading</span><span class="o">=</span><span class="default_value">3</span></em>, <em class="sig-param"><span class="n">verbose</span><span class="o">=</span><span class="default_value">True</span></em>, <em class="sig-param"><span class="o">**</span><span class="n">kwargs</span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/gummy/journals.html#NCBICrawler"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#gummy.journals.NCBICrawler" title="Permalink to this definition">¶</a></dt>
<dd><p>Bases: <a class="reference internal" href="#gummy.journals.GummyAbstJournal" title="gummy.journals.GummyAbstJournal"><code class="xref py py-class docutils literal notranslate"><span class="pre">gummy.journals.GummyAbstJournal</span></code></a></p>
<dl class="simple">
<dt>URL:</dt><dd><ul class="simple">
<li><p><a class="reference external" href="https://www.ncbi.nlm.nih.gov">https://www.ncbi.nlm.nih.gov</a></p></li>
</ul>
</dd>
</dl>
<dl class="py attribute">
<dt id="gummy.journals.NCBICrawler.crawl_type">
<code class="sig-name descname">crawl_type</code><a class="headerlink" href="#gummy.journals.NCBICrawler.crawl_type" title="Permalink to this definition">¶</a></dt>
<dd><p><a class="reference internal" href="#gummy.journals.NCBICrawler" title="gummy.journals.NCBICrawler"><code class="xref py py-meth docutils literal notranslate"><span class="pre">NCBICrawler's</span></code></a> default <code class="docutils literal notranslate"><span class="pre">crawl_type</span></code> is <code class="docutils literal notranslate"><span class="pre">"soup"</span></code>.</p>
<dl class="field-list simple">
<dt class="field-odd">Type</dt>
<dd class="field-odd"><p>str</p>
</dd>
</dl>
</dd></dl>
<dl class="py method">
<dt id="gummy.journals.NCBICrawler.arrange_english">
<em class="property">static </em><code class="sig-name descname">arrange_english</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">english</span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/gummy/journals.html#NCBICrawler.arrange_english"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#gummy.journals.NCBICrawler.arrange_english" title="Permalink to this definition">¶</a></dt>
<dd><p>Get rid of extra characters from body (english). This method is used in <code class="xref py py-meth docutils literal notranslate"><span class="pre">arrange_english</span></code>.</p>
<dl class="field-list simple">
<dt class="field-odd">Parameters</dt>
<dd class="field-odd"><p><strong>english</strong> (<em>str</em>) – Raw English.</p>
</dd>
<dt class="field-even">Returns</dt>
<dd class="field-even"><p>Arranged English</p>
</dd>
<dt class="field-odd">Return type</dt>
<dd class="field-odd"><p>str</p>
</dd>
</dl>
</dd></dl>
<dl class="py method">
<dt id="gummy.journals.NCBICrawler.get_title_from_soup">
<code class="sig-name descname">get_title_from_soup</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">soup</span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/gummy/journals.html#NCBICrawler.get_title_from_soup"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#gummy.journals.NCBICrawler.get_title_from_soup" title="Permalink to this definition">¶</a></dt>
<dd><p>Get page title from page source.</p>
<dl class="field-list simple">
<dt class="field-odd">Parameters</dt>
<dd class="field-odd"><p><strong>soup</strong> (<em>BeautifulSoup</em>) – A data structure representing a parsed HTML or XML document.)</p>
</dd>
<dt class="field-even">Returns</dt>
<dd class="field-even"><p>A page title.</p>
</dd>
<dt class="field-odd">Return type</dt>
<dd class="field-odd"><p>str</p>
</dd>
</dl>
</dd></dl>
<dl class="py method">
<dt id="gummy.journals.NCBICrawler.get_sections_from_soup">
<code class="sig-name descname">get_sections_from_soup</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">soup</span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/gummy/journals.html#NCBICrawler.get_sections_from_soup"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#gummy.journals.NCBICrawler.get_sections_from_soup" title="Permalink to this definition">¶</a></dt>
<dd><p>Get sections from page source.</p>
<dl class="field-list simple">
<dt class="field-odd">Parameters</dt>
<dd class="field-odd"><p><strong>soup</strong> (<em>BeautifulSoup</em>) – A data structure representing a parsed HTML or XML document.)</p>
</dd>
<dt class="field-even">Returns</dt>
<dd class="field-even"><p>Page sections. Each element is (bs4.element.Tag)</p>
</dd>
<dt class="field-odd">Return type</dt>
<dd class="field-odd"><p>list</p>
</dd>
</dl>
</dd></dl>
<dl class="py method">
<dt id="gummy.journals.NCBICrawler.get_head_from_section">
<code class="sig-name descname">get_head_from_section</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">section</span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/gummy/journals.html#NCBICrawler.get_head_from_section"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#gummy.journals.NCBICrawler.get_head_from_section" title="Permalink to this definition">¶</a></dt>
<dd><p>Get head from a page section.</p>
<dl class="field-list simple">
<dt class="field-odd">Parameters</dt>
<dd class="field-odd"><p><strong>section</strong> (<em>bs4.element.Tag</em>) – Represents an HTML or XML tag that is part of a parse tree, along with its attributes and contents.</p>
</dd>
<dt class="field-even">Returns</dt>
<dd class="field-even"><p>A section head tag.</p>
</dd>
<dt class="field-odd">Return type</dt>
<dd class="field-odd"><p>bs4.element.Tag</p>
</dd>
</dl>
</dd></dl>
</dd></dl>
<dl class="py class">
<dt id="gummy.journals.PubMedCrawler">
<em class="property">class </em><code class="sig-prename descclassname">gummy.journals.</code><code class="sig-name descname">PubMedCrawler</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">gateway</span><span class="o">=</span><span class="default_value">'useless'</span></em>, <em class="sig-param"><span class="n">sleep_for_loading</span><span class="o">=</span><span class="default_value">3</span></em>, <em class="sig-param"><span class="n">verbose</span><span class="o">=</span><span class="default_value">True</span></em>, <em class="sig-param"><span class="o">**</span><span class="n">kwargs</span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/gummy/journals.html#PubMedCrawler"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#gummy.journals.PubMedCrawler" title="Permalink to this definition">¶</a></dt>
<dd><p>Bases: <a class="reference internal" href="#gummy.journals.GummyAbstJournal" title="gummy.journals.GummyAbstJournal"><code class="xref py py-class docutils literal notranslate"><span class="pre">gummy.journals.GummyAbstJournal</span></code></a></p>
<dl class="simple">
<dt>URL:</dt><dd><ul class="simple">
<li><p><a class="reference external" href="https://pubmed.ncbi.nlm.nih.gov">https://pubmed.ncbi.nlm.nih.gov</a></p></li>
</ul>
</dd>
</dl>
<dl class="py attribute">
<dt id="gummy.journals.PubMedCrawler.crawl_type">
<code class="sig-name descname">crawl_type</code><a class="headerlink" href="#gummy.journals.PubMedCrawler.crawl_type" title="Permalink to this definition">¶</a></dt>
<dd><p><a class="reference internal" href="#gummy.journals.PubMedCrawler" title="gummy.journals.PubMedCrawler"><code class="xref py py-meth docutils literal notranslate"><span class="pre">PubMedCrawler's</span></code></a> default <code class="docutils literal notranslate"><span class="pre">crawl_type</span></code> is <code class="docutils literal notranslate"><span class="pre">"soup"</span></code>.</p>
<dl class="field-list simple">
<dt class="field-odd">Type</dt>
<dd class="field-odd"><p>str</p>
</dd>
</dl>
</dd></dl>
<dl class="py attribute">
<dt id="gummy.journals.PubMedCrawler.AvoidIdsPatterns">
<code class="sig-name descname">AvoidIdsPatterns</code><a class="headerlink" href="#gummy.journals.PubMedCrawler.AvoidIdsPatterns" title="Permalink to this definition">¶</a></dt>
<dd><p>Markers indicating the extra section to remove in <a class="reference internal" href="#gummy.journals.PubMedCrawler.get_sections_from_soup" title="gummy.journals.PubMedCrawler.get_sections_from_soup"><code class="xref py py-meth docutils literal notranslate"><span class="pre">get_sections_from_soup</span></code></a></p>
<dl class="field-list simple">
<dt class="field-odd">Type</dt>
<dd class="field-odd"><p>list</p>
</dd>
</dl>
</dd></dl>
<dl class="py method">
<dt id="gummy.journals.PubMedCrawler.get_contents_soup">
<code class="sig-name descname">get_contents_soup</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">url</span></em>, <em class="sig-param"><span class="n">driver</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="o">**</span><span class="n">gatewaykwargs</span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/gummy/journals.html#PubMedCrawler.get_contents_soup"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#gummy.journals.PubMedCrawler.get_contents_soup" title="Permalink to this definition">¶</a></dt>
<dd><p>Get contents from url of the web page using <code class="docutils literal notranslate"><span class="pre">BeautifulSoup</span></code>.</p>
<dl class="field-list simple">
<dt class="field-odd">Parameters</dt>
<dd class="field-odd"><ul class="simple">
<li><p><strong>url</strong> (<em>str</em>) – URL of a paper.</p></li>
<li><p><strong>driver</strong> (<em>WebDriver</em>) – Selenium WebDriver.</p></li>
<li><p><strong>gatewaykwargs</strong> (<em>dict</em>) – Gateway keywargs. See <a class="reference internal" href="gummy.gateways.html#gummy.gateways.GummyAbstGateWay.passthrough" title="gummy.gateways.GummyAbstGateWay.passthrough"><code class="xref py py-meth docutils literal notranslate"><span class="pre">passthrough</span></code></a>.</p></li>
</ul>
</dd>
<dt class="field-even">Returns</dt>
<dd class="field-even"><p>(title, content)</p>
</dd>
<dt class="field-odd">Return type</dt>
<dd class="field-odd"><p>tuple (str, dict)</p>
</dd>
</dl>
</dd></dl>
<dl class="py method">
<dt id="gummy.journals.PubMedCrawler.get_title_from_soup">
<code class="sig-name descname">get_title_from_soup</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">soup</span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/gummy/journals.html#PubMedCrawler.get_title_from_soup"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#gummy.journals.PubMedCrawler.get_title_from_soup" title="Permalink to this definition">¶</a></dt>
<dd><p>Get page title from page source.</p>
<dl class="field-list simple">
<dt class="field-odd">Parameters</dt>
<dd class="field-odd"><p><strong>soup</strong> (<em>BeautifulSoup</em>) – A data structure representing a parsed HTML or XML document.)</p>
</dd>
<dt class="field-even">Returns</dt>
<dd class="field-even"><p>A page title.</p>
</dd>
<dt class="field-odd">Return type</dt>
<dd class="field-odd"><p>str</p>
</dd>
</dl>
</dd></dl>
<dl class="py method">
<dt id="gummy.journals.PubMedCrawler.get_sections_from_soup">
<code class="sig-name descname">get_sections_from_soup</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">soup</span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/gummy/journals.html#PubMedCrawler.get_sections_from_soup"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#gummy.journals.PubMedCrawler.get_sections_from_soup" title="Permalink to this definition">¶</a></dt>
<dd><p>Get sections from page source.</p>
<dl class="field-list simple">
<dt class="field-odd">Parameters</dt>
<dd class="field-odd"><p><strong>soup</strong> (<em>BeautifulSoup</em>) – A data structure representing a parsed HTML or XML document.)</p>
</dd>
<dt class="field-even">Returns</dt>
<dd class="field-even"><p>Page sections. Each element is (bs4.element.Tag)</p>
</dd>
<dt class="field-odd">Return type</dt>
<dd class="field-odd"><p>list</p>
</dd>
</dl>
</dd></dl>
<dl class="py method">
<dt id="gummy.journals.PubMedCrawler.get_head_from_section">
<code class="sig-name descname">get_head_from_section</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">section</span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/gummy/journals.html#PubMedCrawler.get_head_from_section"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#gummy.journals.PubMedCrawler.get_head_from_section" title="Permalink to this definition">¶</a></dt>
<dd><p>Get head from a page section.</p>
<dl class="field-list simple">
<dt class="field-odd">Parameters</dt>
<dd class="field-odd"><p><strong>section</strong> (<em>bs4.element.Tag</em>) – Represents an HTML or XML tag that is part of a parse tree, along with its attributes and contents.</p>
</dd>
<dt class="field-even">Returns</dt>
<dd class="field-even"><p>A section head tag.</p>
</dd>
<dt class="field-odd">Return type</dt>
<dd class="field-odd"><p>bs4.element.Tag</p>
</dd>
</dl>
</dd></dl>
</dd></dl>
<dl class="py class">
<dt id="gummy.journals.OxfordAcademicCrawler">
<em class="property">class </em><code class="sig-prename descclassname">gummy.journals.</code><code class="sig-name descname">OxfordAcademicCrawler</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">gateway</span><span class="o">=</span><span class="default_value">'useless'</span></em>, <em class="sig-param"><span class="n">sleep_for_loading</span><span class="o">=</span><span class="default_value">3</span></em>, <em class="sig-param"><span class="n">verbose</span><span class="o">=</span><span class="default_value">True</span></em>, <em class="sig-param"><span class="o">**</span><span class="n">kwargs</span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/gummy/journals.html#OxfordAcademicCrawler"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#gummy.journals.OxfordAcademicCrawler" title="Permalink to this definition">¶</a></dt>
<dd><p>Bases: <a class="reference internal" href="#gummy.journals.GummyAbstJournal" title="gummy.journals.GummyAbstJournal"><code class="xref py py-class docutils literal notranslate"><span class="pre">gummy.journals.GummyAbstJournal</span></code></a></p>
<dl class="simple">
<dt>URL:</dt><dd><ul class="simple">
<li><p><a class="reference external" href="https://academic.oup.com">https://academic.oup.com</a></p></li>