Bayesian Multi-Trait Multi-Environment | Development version 0.0.19

[Last README update: 2018-10-05]

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Table of contents

• NEWS
  • Instructions
    • Installation
    • Dataset
  • How to cite this package
  • Contributions
  • Authors

News of this version (0.0.19)

Revision 19

• Update plot and boxplot functions

Revision 18

• New predictor_Sec_complete parameter in BMTMERS_Env() function.

Revision 17

• New predictor_Sec_complete parameter in BMTMERS() function.

Revision 16

• The MSEP was changed to MAAPE for the error estimations of the predictions.
• Minor fixes in the documentation.
• Now the boxplots can be ordered by the MAAPE.
• fixed the predicted output.

Revision 15

• Implement parallel mode in the BMTMERS function
• Implement validation to parallelCores parameter in the functions that could use it.
• export n_cores used to fit the models that could use parallelCores parameter.
• fixed class of BME function.

Revision 14

• Update unix support

Revision 13

• Initial development is in progress, but there has not yet been a stable, usable release suitable for the public; this is a pre-release, be careful.

Instructions for proper implementation

Installation

To complete installation of dev version of BMTME from GitHub, you have to install Rtools Software and a few packages first.

install.packages('devtools')
devtools::install_github('frahik/BMTME')

Datasets

The package include 6 sample datasets

Name	Lines	Environment	Traits	Total of observations	ME models	MTME models
MaizeToy	30	3	3	270	*	*
WheatIranian	30	2	2	120	*	*
WheatJapa30	30	1	6	180	*
WheatJapa50	50	1	3	150	*
WheatMadaToy	50	1	6	300	*
WheatToy	30	3	2	180	*	*

To load one dataset, use the function data(datasetName)

How to cite this package

First option, by the article paper

(Comming soon)

Second option, by the manual package

(Comming soon)

Contributions

If you have any suggestions or feedback, I would love to hear about it. Feel free to report new issues in this link, also if you want to request a feature/report a bug, or make a pull request if you can contribute.

Authors

• Francisco Javier Luna-Vázquez (Author, Maintainer)
• Osval Antonio Montesinos-López (Author)
• Abelardo Montesinos-López (Author)
• José Crossa (Author)
• Fernando Tolero (Author)