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DESCRIPTION
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DESCRIPTION
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Package: crosshap
Type: Package
Title: Local Haplotype Clustering and Visualization
Version: 1.4.0
Authors@R:
c(person(given = "Jacob",
family = "Marsh",
role = c("aut", "cre"),
email = "jake.marsh@live.com.au",
comment = c(ORCID = "0000-0003-3734-2023")),
person(given = "Brady",
family = "Johnston",
role = "aut",
email = "brady.johnston@me.com",
comment = c(ORCID = "0000-0001-6301-2269")),
person(given = "Jakob",
family = "Petereit",
role = "aut",
email = "petinho86@gmail.com",
comment = c(ORCID = "0000-0003-2159-0380"))
)
Maintainer: Jacob Marsh <jake.marsh@live.com.au>
Description: A local haplotyping visualization toolbox to capture major patterns
of co-inheritance between clusters of linked variants, whilst connecting findings
to phenotypic and demographic traits across individuals. 'crosshap' enables users
to explore and understand genomic variation across a trait-associated region.
For an example of successful local haplotype analysis, see Marsh et al. (2022)
<doi:10.1007/s00122-022-04045-8>.
Encoding: UTF-8
LazyData: true
LazyDataCompression: xz
RoxygenNote: 7.2.3
Imports:
cli,
clustree,
data.table,
dbscan,
dplyr,
ggdist,
ggplot2,
ggpp,
gridExtra,
gtable,
magrittr,
patchwork,
rlang,
scales,
tibble,
tidyr
Suggests:
covr,
knitr,
rmarkdown,
testthat (>= 3.0.0),
umap,
vdiffr
Depends:
R (>= 4.00)
URL: https://jacobimarsh.github.io/crosshap/
BugReports: https://github.com/jacobimarsh/crosshap/issues
License: MIT + file LICENSE
Config/testthat/edition: 3