hmR is an R package to analyze heteromotility data.
The semantics of hmR are inspired by Seurat.
require(devtools)
install_github('jacobkimmel/hmR')
hmR semantics focus on a heteromotility data set object, initialized from raw cell behavior feature data extracted using heteromotility.
library(hmR)
df = read.csv('path/to/motility_statistics.csv')
mot = hmMakeObject(raw.data=df)
# Perform hierarchical clustering
mot = hmHClust(mot, k = 3, method='ward.D2')
# Run and plot PCA
mot = hmPCA(mot)
mot = hmPlotPCA(mot)
# Run and plot tSNE
mot = hmTSNE(mot)
mot = hmPlotTSNE
# etc.