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The "predict_slide" function in slideflow studio does not work. I have been using the magnification value in the tile_um variable during tile extraction. The slides (TCGA library for ER status by IHC) appear to have different tile_um sizes ranging from 497 to 505 uM when they are loaded in slideflow. Is this variable nature the problem?
To Reproduce
Steps to reproduce the behavior:
Load project
Load MIL model
Load slide that has been run in MIL model w/ attention values
Click predict slide
Error message in slideflow studio
MIL model tile size (tile_px = 500, tile_um = 10x) does not match the currently loaded slide (tile_px = 500, tile_um=497)
Expected behavior
I want to be able to predict the slide and overlay attention values.
Environment:
Slideflow Version (e.g., 1.0): 2.3.1
OS (e.g., Ubuntu): Red Hat 8
How you installed Slideflow (pip, source): pip
Python version: 3.9
The text was updated successfully, but these errors were encountered:
Description
The "predict_slide" function in slideflow studio does not work. I have been using the magnification value in the tile_um variable during tile extraction. The slides (TCGA library for ER status by IHC) appear to have different tile_um sizes ranging from 497 to 505 uM when they are loaded in slideflow. Is this variable nature the problem?
To Reproduce
Steps to reproduce the behavior:
Error message in slideflow studio
MIL model tile size (tile_px = 500, tile_um = 10x) does not match the currently loaded slide (tile_px = 500, tile_um=497)
Expected behavior
I want to be able to predict the slide and overlay attention values.
Environment:
pip
, source): pipThe text was updated successfully, but these errors were encountered: