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Thimble GUI example files throw error #21

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EdGreen21 opened this issue Feb 23, 2022 · 1 comment
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Thimble GUI example files throw error #21

EdGreen21 opened this issue Feb 23, 2022 · 1 comment
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@EdGreen21
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Was testing the code and thought to use the GUI mode first out of idle curiosity. Uploading the example file:
stitchr-main\Templates\GUI-Examples\human_TRA-TRB.tsv and attempting to process it (without P2A linker) leads to the following error:

gui-stitcher.py:436: UserWarning: WArning: user-provided gene TCRgenename*01 contains non-DNA sequences....
KeyError: ('TRA/TRB', 'HUMAN')

This is a fatal error and leads to dropping back to console. Seems like it's probably a teething error with the move to 0.91, thought I'd raise an issue (I'll go back to command line use)

@JamieHeather JamieHeather self-assigned this Feb 24, 2022
@JamieHeather JamieHeather added the bug Something isn't working label Feb 24, 2022
@JamieHeather
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JamieHeather commented Feb 24, 2022

Thanks for flagging this up Ed! You're right, just a silly missed variable name when the GUI tried to upload an existing data file.

Should be fixed in the GUI version 0.4.1 / cd33f83 .

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