ggforest function error (invalid “recordedplot”) in Rj editor

[yoshi-vet]

Thank you for the teams of jamovi developers!

I’m having trouble with ggforest function in Rj-editor.

In my Mac environment, a calculation is not finished and forestplot is not drawn.(fig.1)
The forestplot is displayed without a problem by the same cord in R.

In Windows environment, an error code [invalid “recordedplot”: INTEGER() can only be applied to a ‘integer’, not a ‘NULL’] is displayed.(fig.2)

Jamovi 1.6.1
Rj-Editor 1.1.0
R version 4.0.2 (2020-06-22)
Jmv 1.2.23
Jmvconnect 1.2.18
Jmvcore 1.2.23

MacOS 10.15.6（19G2021）
(Windows 10 version 1909(build 18363.1049))

Could you help me?

kidney.omv.zip

[jonathon-love]

hi,

thanks for reporting. could you see if this works in jamovi 1.2.27?

with thanks

[yoshi-vet]

Hi! Jonathon!
Thank you for quick reply!

I tried Jamovi 1.2.27, an error code [This analysis has terminated, likely due to hitting a resource limit.] is displayed.

Thanks!

[yoshi-vet]

When I use the deathwatch and jsurvival module, forest plot can draw well, that I wonder.
I’d like to use ggforest function with Rj editor, as use ties option=“exact”.

with thanks

[sbalci]

I’d like to use ggforest function with Rj editor, as use ties option=“exact”.

Would you please send me the arguments you would like to use in ggforest. I can add them as options in the user interface.
Best wishes.

[yoshi-vet]

Thanks! sbalci.

jsurvival module is very useful and I really appreciate you!

I would like to use coxph function to calculate hazard ratio, and use ggforest function to figure out it by forest plot.

In Multivariate Survival Analysis, I would like to be able to use "breslow" or "efron" or "exact" method as the “ties” argument of the coxph function by dropdown list.
Then, the result should be reflected to forest plot.

jsurvival may use “efron” method as the default option of coxph function.
SAS user and SPSS user may use “breslow” method, I usually use “exact” method.

Best regards,

[yoshi-vet]

Hi,

I tried it various combinations.

(Jamovi 1.6.1 + R4.0.2 -> does not work)
(Jamovi 1.2.27 + R4.0.2 -> does not work)

Jamovi 1.6.3 + R 4.0.2 -> does not work
Jamovi 1.6.3 + R 3.6.3 -> does not work
Jamovi 1.2.27 + R 3.6.3 -> It works well !!(fig.5)

The same phenomenon seems to be generated in ggadjustedcurves function.
(or other survminer’s plot function…?)

Will this result be helpful?

Thanks!

[jonathon-love]

thanks yoshi, that is helpful.

[yoshi-vet]

I updated survival package (3.2-5 to 3.2-7) and tried it again afterwards.

On Windows 10 environment (Jamovi 1.6.3 + R 4.0.2), it works well.
However, on Mac environment (Jamovi 1.6.3 + R 4.0.2), it does not work yet...

Is this a problem of the survival package?
or Mac environment?

Sorry for the confusion.

thanks.

[jonathon-love]

i'm not entirely sure ...

[yoshi-vet]

I update jamovi 1.6.18 and R 4.0.4, it works well ! (fig.6)
But, there is still the problem not to be able to draw two or more graphs.(fig.7)
(jamovi 1.2.27 + R 3.6.3, can draw plural graphs.)

Anyway, thank you for Jonathon and the teams of jamovi developers!