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Add a stability selection step by default (with a limited number of resamples) and update getBestModel to output network with StARS selected lambda.
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Done and inserted in the vignette of PLNnetwork. Here is a small example (note that the stability seleciton is performed only once)
library(PLNmodels) library(ade4) data("trichometeo") abundance <- as.matrix(trichometeo$fau) fits <- PLNnetwork(abundance) network_StARS_.9 <- fits$getBestModel("StARS", stability = 0.9 ) network_StARS_.95 <- fits$getBestModel("StARS", stability = 0.95) par(mfrow=c(1,2)) network_StARS_.9$plot_network() network_StARS_.95$plot_network()
mahendra-mariadassou
jchiquet
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Add a stability selection step by default (with a limited number of resamples) and update getBestModel to output network with StARS selected lambda.
The text was updated successfully, but these errors were encountered: