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Simulations are run using the `causeSims` R package. The package can be downloaded using
```
devtools::install_github("jean997/causeSims")
```
This package relies on multiple R packages that are not on CRAN, so you will need to download these separately.
For detailed installation instructions including installation of supporting R packages for other methods and a detailed description of the package see [here](https://github.com/jean997/causeSims).
We also use the [Dynamical Statisical Comparisons](https://stephenslab.github.io/dsc-wiki/overview) software.