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For some reason the scripts had execute bit set, and were not writeable for groups or others
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956df69
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This must somehow come from the way I templated the book. I followed the instructions here:
https://bookdown.org/yihui/bookdown/get-started.html
Something to do with unzipping?
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Maybe, how did you unzip it? some unzip implementations don't handle permissions (I think the internal R implementation does not). I just did it on the command line and the permissions did work.
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I think it was an "auto unzip" from Safari or macOS.