This repository contains code that implements, evaluates, and extends the Cyber-T method of Bayesian regularized differential expression analysis for protein mass spectrometry data.
To run the code in the repository, the following must be installed:
- Python (2.7+)
- NumPy (1.11.1+)
- Pandas (0.8.1+)
- rpy2 (2.8.5+)
- SciPy (0.18.0+)
- h5py (2.7.0+)
- Scikit-Learn (0.17.1+)
- Matplotlib (1.5.2+)
- R (3.4+)
- Bioconductor
- limma
- multtest
TODO