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smartanno_conf.json
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smartanno_conf.json
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{
"setup_instruction": "if there is no 'smartanno_conf.json' under 'conf' directory, need to copy this file and rename it to 'smartanno_conf.json'. ",
"api_key": "",
"api_key_comment": "api key for UMLS access",
"db_header": "sqlite+pysqlite:///",
"db_path": "data/test.sqlite",
"learning_steps": 10,
"learning_steps_comment": "reclassify the rest of samples after review every # of samples",
"status": {
"default": 0,
"workflow1": 1,
"workflow_0": 17,
"tasknamer_2": "task1",
"types_6": [
"Typea",
"Typeb"
],
"tasknamer_5": "task1",
"tasknamer_6": "task1",
"tasknamer_25": "task1",
"types_29": [
"Typea",
"Typeb"
],
"umls_extender_loop": 10,
"w_e_extender_loop": 12,
"rb_review_loop": 17
},
"glove": {
"vocab": 257471,
"vector": 400,
"model_path": "models/embeddings/mimic3.embeddings.400"
},
"rush_rules_path": "conf/rush_rules.tsv",
"umls": {
"sources": [
"SNOMEDCT_US"
],
"filter_by_length": 0,
"filter_by_contains": true,
"max_query": 50
},
"review": {
"review_comment": "configurations of sample data reviewing window",
"div_height": "200px",
"div_height_comment": "height of textarea to display the sample",
"meta_columns": [
"DOC_ID",
"DATE",
"REF_DATE"
],
"rb_model_threshold": 30,
"rb_model_threshold_comment": "max_documents_for_rb_model",
"show_meta_name": true,
"ml_learning_pace": 5,
"highlight_color": "PaleGreen"
},
"cnn_model": {
"max_token_per_sentence": 5000,
"stopwords_file": "",
"learning_pace": 10
},
"nb_model": {
"learning_pace": 10
},
"logisticbow_model": {
"learning_pace": 10
},
"whoosh": {
"root_path": "data/whoosh_idx"
}
}