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Raw

WSG

Bash command and data (or links) for wild strawberry genome (WSG)

Genome data available

  1. All the raw sequencing data have been submitted to the National Genomics Data Center (https://ngdc.cncb.ac.cn/), and the accession number is CRA005392.

  2. All the genome assemblies reported in this paper have been deposited in the GWH (https://ngdc.cncb.ac.cn/gwh), and the accession number is GWHDEDQ00000000 (F. chiloensis), GWHDEDR00000000 (F. virginiana) and GWHDEDN00000000 (F. nipponica).

  3. All the genome assembly and annotation files are also available on the GDR (https://www.rosaceae.org/). The download pages are below: F. chiloensis (https://www.rosaceae.org/Analysis/16216791); F. virginiana (https://www.rosaceae.org/Analysis/16216793); F. nipponica (https://www.rosaceae.org/Analysis/16216792).

  4. The raw RNA_seq data which used for homoeologous expression bias (HEB) analysis are now available on Bigsub, the download pages are below: https://bigd.big.ac.cn/gsa/browse/CRA014723.

  5. All the organelle genome assembly and annotation files (provide .gb format) are available on the this page. The download link are below: https://github.com/jinxin112233/WSG/blob/main/organelle_genome.zip.

Contact

Any interseting comments and questions are welcome.

(Since the article was published, we have responded many interesting biological and other questions. We will continue to do so in the future.)

Citations

Jin, X., Du, H., Zhu, C., Wan, H., Liu, F., Ruan, J., Mower, J. P., & Zhu, A. Haplotype-resolved genomes of wild octoploid progenitors illuminate genomic diversifications from wild relatives to cultivated strawberry. Nature plants 9, 1252–1266 (2023).