Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

GBZ support #2

Merged
merged 7 commits into from Nov 4, 2021
Merged

GBZ support #2

merged 7 commits into from Nov 4, 2021

Conversation

jltsiren
Copy link
Owner

@jltsiren jltsiren commented Nov 4, 2021

Basic support for the GBZ file format:

  • Simple-SDS serialization format.
  • Random access to nodes and segments by node id.
  • Iterators over nodes and segments.
  • Iterators over predecessors and successors of nodes and segments.

Also started using proper data types for GFA segments and node/segment/path orientation.

@jltsiren jltsiren merged commit d8fde5f into main Nov 4, 2021
@jltsiren jltsiren deleted the gbz-support branch November 4, 2021 02:30
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Reviewers
No reviews
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

Successfully merging this pull request may close these issues.

None yet
1 participant
@jltsiren