Releases: rotary-genomics/rotary
Minor enhancements
Fixes an edge case so that circular contigs can be rotated even if no contig has the DnaA marker. Also bumps the medaka version to address #18.
End repair fix
Fixes an issue introduced in the end repair step in 0.2.0-beta2.
Name change and tool/DB updates
In this release, the tool name was updated to the release name, rotary. Aside from this, several minor enhancements were made, including improvements to the README, updates to tool/DB versions, and addition of more options to the config file. The main workflow remains more or less unchanged.
A few targets are left before this is released as a non-beta:
- Add summary reports of QC, assembly, and so on
- Ideally release a wrapper for the setup/run commands, for ease of use
- Add end-to-end test (at least a description of how to run locally, if not an automated test)
Summary of major changes (since 0.1.0-beta2)
Contributors
Assets 2
Bug fix
Fixes an issue in 0.1.0-beta. In 0.1.0-beta, if only one circular or one linear contig was left after polishing, that contig was deleted during the circularization module. The contig is now retained in 0.1.0-beta2.
Development version
Using the temporary development name toyako (to be changed before official release). First end-to-end working version of genome pipeline.
Major development work
- Add conditional rules for linear vs circular contigs by @jmtsuji in #3
- End repair of contigs from Flye by @jmtsuji in #4
- Centralize DB download by @jmtsuji in #5
Full Changelog: https://github.com/jmtsuji/nanopore-workflows/commits/0.1.0-beta