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This is great, and could be "easily" implemented by adding reference_pts: Optional[layers.Points], moving_pts: Optional[layers.Points] to the start_affinder function signature. If they are not set, we create them, but if they are set, we use the existing ones.
@tlambert03 I don't think there's optional support in magicgui yet, right? ie I'd like to have a combobox for existing points layers in the UI but there should be a "None/create" option in the combobox...
A complement to #9
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