devel_build_check.yaml

# This workflow builds the site, renders the codemeta data, and 
# then does a build check with R-CMD-check


# Name (appears on badge, keep it short)
name: R-CMD-check


# When to run
on:
  push:
    branches:
      - devel

# Define job
# What systems to run on (the matrix)

jobs:
  R-CMD-check:
    runs-on: ${{ matrix.config.os }}

    name: ${{ matrix.config.os }} (${{ matrix.config.r }})

    strategy:
      fail-fast: false
      matrix:
        config:
          - {os: windows-latest, r: 'oldrel'}
          - {os: windows-latest, r: 'release'}
          - {os: windows-latest, r: 'devel'}
          - {os: macOS-latest, r: 'oldrel'}
          - {os: macOS-latest, r: 'release'}
          #- {os: macOS-latest, r: 'devel'} 
          - {os: ubuntu-20.04, r: 'oldrel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
          - {os: ubuntu-20.04, r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
          - {os: ubuntu-20.04, r: 'devel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}

# Set up the environment
    env:
      R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
      RSPM: ${{ matrix.config.rspm }}
      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}

#Steps of the jobs
# What things to use to complete the job
    steps:
      - uses: actions/checkout@v2

      - uses: r-lib/actions/setup-r@v1
        with:
          r-version: ${{ matrix.config.r }}

      - uses: r-lib/actions/setup-pandoc@v1

#Add dependencies
      - name: Query dependencies
        run: |
          install.packages('remotes')
          saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
          writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version")
        shell: Rscript {0}

#Windows
      - name: Cache R packages
        if: runner.os != 'Windows'
        uses: actions/cache@v2
        with:
          path: ${{ env.R_LIBS_USER }}
          key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}
          restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-

#System dependencies for linux
      - name: Install system dependencies for Linux
        if: runner.os == 'Linux'
        run: |
          while read -r cmd
          do
            eval sudo $cmd
          done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "20.04"))')

#Add quartz for macOS only
      - name: Install XQuartz for macOS
        if: runner.os == 'macOS'
        run: |
          wget https://github.com/XQuartz/XQuartz/releases/download/XQuartz-2.7.11/XQuartz-2.7.11.dmg
          sudo hdiutil attach XQuartz-2.7.11.dmg
          sudo installer -package /Volumes/XQuartz-2.7.11/XQuartz.pkg -target / 

#R script to install rcmdcheck and Rage
      - name: Install dependencies, rcmdcheck, Rage
        run: |
          remotes::install_deps(dependencies = TRUE, force = TRUE)
          remotes::install_cran("rcmdcheck")
          remotes::install_github("jonesor/Rage") #in suggests
        shell: Rscript {0}

#R script to build the site
      - name: Build the site (on macOS, and latest release R version)
        if: matrix.config.os == 'macOS-latest' && matrix.config.r == 'release'
        run: |
          install.packages("textshaping",type = "binary",dependencies = TRUE)
          install.packages("devtools")
          devtools::install(pkg = ".", dependencies = TRUE)
          install.packages("rmarkdown",dependencies = TRUE)
          rmarkdown::render(input = "README.Rmd","github_document",clean = TRUE)
          unlink("README.html")
          install.packages("pkgdown", dependencies = TRUE)    
          pkgdown::build_site()
          install.packages("digest",dependencies = TRUE)
#        ##  install.packages("codemetar", dependencies = TRUE)
#        ## codemetar::write_codemeta()
        shell: Rscript {0}

#Commit changes to the codemeta, site and README.
#Need only run on macOS-latest with release version of R
      - name: Commit results
        if: matrix.config.os == 'macOS-latest' && matrix.config.r == 'release'
        #if: "!contains(github.event.head_commit.message, 'cm-skip')"
        run: |
           git add codemeta.json
           git add docs/
           git add README.md
           git commit -m 'Re-build site, codemeta.json and README' || echo "No changes to commit"
           git push https://${{github.actor}}:${{secrets.GITHUB_TOKEN}}@github.com/${{github.repository}}.git HEAD:${{ github.ref }} || echo "No changes to commit"
      
      - name: Session info
        run: |
          options(width = 100)
          sessionInfo()
        shell: Rscript {0}

      - name: Check
        env:
          _R_CHECK_CRAN_INCOMING_REMOTE_: false
          _R_CHECK_FORCE_SUGGESTS_: false
        run: rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "warning", check_dir = "check")
        #run: rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran", "--ignore-vignettes"), build_args = c("--no-build-vignettes"), error_on = "warning", check_dir = "check")
        shell: Rscript {0}

      - name: Upload check results
        if: failure()
        uses: actions/upload-artifact@main
        with:
          name: ${{ runner.os }}-r${{ matrix.config.r }}-results
          path: check