hdf5.ipynb

{
 "cells": [
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "# Example Notebook for Setting up and Installing NETCDF4 Data Format, HDF5 File Format and H5PY on Bluemix"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "<div class=\"alert alert-info\" role=\"alert\">\n",
    "  <strong>Background</strong> What started out as a curiosity to help answer a Stack Overflow question about installing h5py on Bluemix turned into this huge notebook hack! :-) In the spirit of sharing to minimize pain, I thought I would document the process to have HDF5 File Format, NECDF4 Data Format and H5PY+NETCDF4 python support within a IBM Bluemix Jupyter notebook.  While these steps require compilation, time and in some cases browser reloading ... fortunately this should be a one time step.  After completion, you'll have the python modules in your global user space python package repo alongwith their pre-requesite native libs.\n",
    "  \n",
    "<strong>What does all of this mean??</strong> You'll be able to do python module imports such as <strong>import h5py</strong> OR <strong>import NETCDF4</strong> in any other notebook within this spark service instance.  You'll be able to read HDF5 files.  You'll be able to work wtih NETCDF4 file formats.  Cool!\n",
    "</div>"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 1,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "UCS2 build\n"
     ]
    }
   ],
   "source": [
    "# On Linux, Python installations default to the unicode representation of the OS environment (ucs2 vs ucs4)\n",
    "# Let's check the size of the Unicode character a Python interpreter is using by checking the value of sys.maxunicode\n",
    "import sys\n",
    "if sys.maxunicode > 65535:\n",
    "    print 'UCS4 build'\n",
    "else:\n",
    "    print 'UCS2 build'"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Identify your current working directory\n",
    "### We will need to declare a few paths"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 2,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "prefix = /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5\n",
      "shareDir = /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share\n",
      "hdf5Dir = /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5\n",
      "netcdfDir = /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf\n"
     ]
    }
   ],
   "source": [
    "# Author:  Sanjay Joshi (@jStartter) ibm.biz/sanjay_joshi\n",
    "# Courtesy of jStart - IBM Emerging Technology's client engagement team\n",
    "\n",
    "import os\n",
    "import subprocess as sub\n",
    "\n",
    "p = sub.Popen(['pwd'],stdout=sub.PIPE,stderr=sub.PIPE)\n",
    "prefix, errors = p.communicate()\n",
    "prefix = os.sep.join(prefix.split(os.sep)[:-2])\n",
    "shareDir = prefix + \"/.local/share\"\n",
    "hdf5Dir = shareDir + \"/notebook_hdf5\"\n",
    "netcdfDir = shareDir + \"/notebook_netcdf\"\n",
    "print \"prefix = \" + prefix\n",
    "print \"shareDir = \" + shareDir\n",
    "print \"hdf5Dir = \" + hdf5Dir\n",
    "print \"netcdfDir = \" + netcdfDir"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 3,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "# Temp Testing cell to help reset setup\n",
    "# Uncomment and Run if you want to test modifications/tweaks to this notebook and need to reset to an uninstalled state\n",
    "#!rm -rf $shareDir\n",
    "#!rm -rf $prefix/.local/lib/python2.7/site-packages/*\n",
    "#!rm -rf *"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 4,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "HDF5 is NOT installed within this notebook's user space\n",
      "NETCDF is NOT installed within this notebook's user space\n"
     ]
    }
   ],
   "source": [
    "# Let's test to see if we've already built HDF5\n",
    "isHDF5Installed = os.path.isfile(hdf5Dir + \"/hdf5/bin/h5cc\")\n",
    "if isHDF5Installed:\n",
    "    print \"Congratulations! HDF5 is already installed within your notebook user space\"\n",
    "else:\n",
    "    print \"HDF5 is NOT installed within this notebook's user space\"\n",
    "    \n",
    "# Let's test to see if we've already built netcdf\n",
    "isNETCDFInstalled = os.path.isfile(netcdfDir + \"/netcdf/bin/nc-config\")\n",
    "if isNETCDFInstalled:\n",
    "    print \"Congratulations! NETCDF is already installed within your notebook user space\"\n",
    "    !$netcdfDir/netcdf/bin/nc-config --version\n",
    "else:\n",
    "    print \"NETCDF is NOT installed within this notebook's user space\""
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 5,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "HDF5 directories created to facilitate HDF5 build and install\n"
     ]
    }
   ],
   "source": [
    "if not isHDF5Installed:\n",
    "    !mkdir $shareDir\n",
    "    !mkdir $hdf5Dir\n",
    "    !mkdir $hdf5Dir/hdf5\n",
    "    print \"HDF5 directories created to facilitate HDF5 build and install\""
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 6,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "NETCDF directories created to facilitate netcdf build and install\n"
     ]
    }
   ],
   "source": [
    "if not isNETCDFInstalled:\n",
    "    !mkdir $netcdfDir\n",
    "    !mkdir $netcdfDir/netcdf\n",
    "    print \"NETCDF directories created to facilitate netcdf build and install\""
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Fetch Snapshot of hdf5 tar gzip file"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 7,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "--2016-05-23 00:31:27--  https://www.hdfgroup.org/ftp/HDF5/current/src/hdf5-1.8.17.tar.gz\n",
      "Resolving www.hdfgroup.org (www.hdfgroup.org)... 50.28.50.143\n",
      "Connecting to www.hdfgroup.org (www.hdfgroup.org)|50.28.50.143|:443... connected.\n",
      "HTTP request sent, awaiting response... 200 OK\n",
      "Length: 12304149 (12M) [application/x-gzip]\n",
      "Saving to: '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17.tar.gz'\n",
      "\n",
      "100%[======================================>] 12,304,149  2.23MB/s   in 5.4s   \n",
      "\n",
      "2016-05-23 00:31:32 (2.19 MB/s) - '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17.tar.gz' saved [12304149/12304149]\n",
      "\n"
     ]
    }
   ],
   "source": [
    "if not isHDF5Installed:\n",
    "    !wget https://www.hdfgroup.org/ftp/HDF5/current/src/hdf5-1.8.17.tar.gz -O $hdf5Dir/hdf5-1.8.17.tar.gz"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Fetch Snapshot of netcdf tar gzip file"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 8,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "--2016-05-23 00:31:32--  https://github.com/Unidata/netcdf-c/archive/v4.4.0.tar.gz\n",
      "Resolving github.com (github.com)... 192.30.252.129\n",
      "Connecting to github.com (github.com)|192.30.252.129|:443... connected.\n",
      "HTTP request sent, awaiting response... 302 Found\n",
      "Location: https://codeload.github.com/Unidata/netcdf-c/tar.gz/v4.4.0 [following]\n",
      "--2016-05-23 00:31:33--  https://codeload.github.com/Unidata/netcdf-c/tar.gz/v4.4.0\n",
      "Resolving codeload.github.com (codeload.github.com)... 192.30.252.161\n",
      "Connecting to codeload.github.com (codeload.github.com)|192.30.252.161|:443... connected.\n",
      "HTTP request sent, awaiting response... 200 OK\n",
      "Length: unspecified [application/x-gzip]\n",
      "Saving to: '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/v4.4.0.tar.gz'\n",
      "\n",
      "    [              <=>                      ] 17,487,357  4.26MB/s   in 3.9s   \n",
      "\n",
      "2016-05-23 00:31:37 (4.26 MB/s) - '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/v4.4.0.tar.gz' saved [17487357]\n",
      "\n"
     ]
    }
   ],
   "source": [
    "if not isNETCDFInstalled:\n",
    "    !wget https://github.com/Unidata/netcdf-c/archive/v4.4.0.tar.gz -O $netcdfDir/v4.4.0.tar.gz"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Untar (extract) file"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 9,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17\n"
     ]
    }
   ],
   "source": [
    "if not isHDF5Installed:\n",
    "    !tar -zxvf $hdf5Dir/hdf5-1.8.17.tar.gz -C $hdf5Dir >/dev/null\n",
    "    hdf5SrcDir = hdf5Dir + \"/hdf5-1.8.17\"\n",
    "    print hdf5SrcDir"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 10,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "total 2376\r\n",
      "drwxr-xr-x 14 s1a2-472d95bcebf7db-bf066087ecf5 users    4096 May 23 00:31 .\r\n",
      "drwxr-xr-x  4 s1a2-472d95bcebf7db-bf066087ecf5 users    4096 May 23 00:31 ..\r\n",
      "-rw-r--r--  1 s1a2-472d95bcebf7db-bf066087ecf5 users     683 Apr 26 07:44 ACKNOWLEDGMENTS\r\n",
      "-rw-r--r--  1 s1a2-472d95bcebf7db-bf066087ecf5 users    5701 Apr 26 07:44 CMakeFilters.cmake\r\n",
      "-rw-r--r--  1 s1a2-472d95bcebf7db-bf066087ecf5 users   24952 Apr 26 07:44 CMakeInstallation.cmake\r\n",
      "-rw-r--r--  1 s1a2-472d95bcebf7db-bf066087ecf5 users   40635 Apr 26 07:44 CMakeLists.txt\r\n",
      "-rw-r--r--  1 s1a2-472d95bcebf7db-bf066087ecf5 users    4677 Apr 26 07:44 COPYING\r\n",
      "-rw-r--r--  1 s1a2-472d95bcebf7db-bf066087ecf5 users    1508 Apr 26 07:44 CTestConfig.cmake\r\n",
      "-rw-r--r--  1 s1a2-472d95bcebf7db-bf066087ecf5 users   68969 May  6 16:41 MANIFEST\r\n",
      "-rw-r--r--  1 s1a2-472d95bcebf7db-bf066087ecf5 users    1318 Apr 26 07:44 Makefile\r\n",
      "-rw-r--r--  1 s1a2-472d95bcebf7db-bf066087ecf5 users    7599 Apr 26 07:44 Makefile.am\r\n",
      "-rw-r--r--  1 s1a2-472d95bcebf7db-bf066087ecf5 users    1318 Apr 26 07:44 Makefile.dist\r\n",
      "-rw-r--r--  1 s1a2-472d95bcebf7db-bf066087ecf5 users   37714 May 10 16:24 Makefile.in\r\n",
      "-rw-r--r--  1 s1a2-472d95bcebf7db-bf066087ecf5 users    1755 May 10 16:31 README.txt\r\n",
      "-rw-r--r--  1 s1a2-472d95bcebf7db-bf066087ecf5 users    1089 Apr 26 07:44 UserMacros.cmake\r\n",
      "-rw-r--r--  1 s1a2-472d95bcebf7db-bf066087ecf5 users  352306 May 10 16:24 aclocal.m4\r\n",
      "-rw-r--r--  1 s1a2-472d95bcebf7db-bf066087ecf5 users    4014 Apr 26 07:44 acsite.m4\r\n",
      "drwxr-xr-x  2 s1a2-472d95bcebf7db-bf066087ecf5 users    4096 May 23 00:31 bin\r\n",
      "drwxr-xr-x  5 s1a2-472d95bcebf7db-bf066087ecf5 users    4096 May 23 00:31 c++\r\n",
      "drwxr-xr-x  5 s1a2-472d95bcebf7db-bf066087ecf5 users    4096 May 23 00:31 config\r\n",
      "-rwxr-xr-x  1 s1a2-472d95bcebf7db-bf066087ecf5 users 1034850 May 10 16:24 configure\r\n",
      "-rw-r--r--  1 s1a2-472d95bcebf7db-bf066087ecf5 users  105916 May 10 16:24 configure.ac\r\n",
      "drwxr-xr-x  2 s1a2-472d95bcebf7db-bf066087ecf5 users    4096 May 23 00:31 examples\r\n",
      "drwxr-xr-x  6 s1a2-472d95bcebf7db-bf066087ecf5 users    4096 May 23 00:31 fortran\r\n",
      "drwxr-xr-x  8 s1a2-472d95bcebf7db-bf066087ecf5 users    4096 May 23 00:31 hl\r\n",
      "drwxr-xr-x  2 s1a2-472d95bcebf7db-bf066087ecf5 users    4096 May 23 00:31 m4\r\n",
      "drwxr-xr-x  2 s1a2-472d95bcebf7db-bf066087ecf5 users    4096 May 23 00:31 release_docs\r\n",
      "drwxr-xr-x  2 s1a2-472d95bcebf7db-bf066087ecf5 users   16384 May 23 00:31 src\r\n",
      "drwxr-xr-x  3 s1a2-472d95bcebf7db-bf066087ecf5 users    8192 May 23 00:31 test\r\n",
      "drwxr-xr-x  2 s1a2-472d95bcebf7db-bf066087ecf5 users    4096 May 23 00:31 testpar\r\n",
      "drwxr-xr-x 14 s1a2-472d95bcebf7db-bf066087ecf5 users    4096 May 23 00:31 tools\r\n"
     ]
    }
   ],
   "source": [
    "if not isHDF5Installed:\n",
    "    !ls -al $hdf5SrcDir"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 11,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0\n"
     ]
    }
   ],
   "source": [
    "if not isNETCDFInstalled:\n",
    "    !tar -zxvf $netcdfDir/v4.4.0.tar.gz -C $netcdfDir >/dev/null\n",
    "    netcdfSrcDir = netcdfDir + \"/netcdf-c-4.4.0\"\n",
    "    print netcdfSrcDir"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 12,
   "metadata": {
    "collapsed": false,
    "scrolled": true
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "total 1584\r\n",
      "drwxr-xr-x 22 s1a2-472d95bcebf7db-bf066087ecf5 users   4096 Jan 13 15:40 .\r\n",
      "drwxr-xr-x  4 s1a2-472d95bcebf7db-bf066087ecf5 users   4096 May 23 00:31 ..\r\n",
      "-rw-r--r--  1 s1a2-472d95bcebf7db-bf066087ecf5 users    292 Jan 13 15:40 .gitignore\r\n",
      "-rw-r--r--  1 s1a2-472d95bcebf7db-bf066087ecf5 users   1572 Jan 13 15:40 .travis.yml\r\n",
      "-rw-r--r--  1 s1a2-472d95bcebf7db-bf066087ecf5 users    944 Jan 13 15:40 .travis.yml.old\r\n",
      "-rw-r--r--  1 s1a2-472d95bcebf7db-bf066087ecf5 users   3427 Jan 13 15:40 CMakeInstallation.cmake\r\n",
      "-rw-r--r--  1 s1a2-472d95bcebf7db-bf066087ecf5 users  56801 Jan 13 15:40 CMakeLists.txt\r\n",
      "-rw-r--r--  1 s1a2-472d95bcebf7db-bf066087ecf5 users   3186 Jan 13 15:40 COMPILE.cmake.txt\r\n",
      "-rw-r--r--  1 s1a2-472d95bcebf7db-bf066087ecf5 users  11363 Jan 13 15:40 CONTRIBUTING.html\r\n",
      "-rw-r--r--  1 s1a2-472d95bcebf7db-bf066087ecf5 users   2032 Jan 13 15:40 COPYRIGHT\r\n",
      "-rw-r--r--  1 s1a2-472d95bcebf7db-bf066087ecf5 users    666 Jan 13 15:40 CTestConfig.cmake.in\r\n",
      "-rw-r--r--  1 s1a2-472d95bcebf7db-bf066087ecf5 users    209 Jan 13 15:40 CTestCustom.cmake\r\n",
      "-rw-r--r--  1 s1a2-472d95bcebf7db-bf066087ecf5 users    261 Jan 13 15:40 FixBundle.cmake.in\r\n",
      "-rw-r--r--  1 s1a2-472d95bcebf7db-bf066087ecf5 users  19394 Jan 13 15:40 INSTALL.md\r\n",
      "-rw-r--r--  1 s1a2-472d95bcebf7db-bf066087ecf5 users    547 Jan 13 15:40 Make0\r\n",
      "-rw-r--r--  1 s1a2-472d95bcebf7db-bf066087ecf5 users   7605 Jan 13 15:40 Makefile.am\r\n",
      "-rw-r--r--  1 s1a2-472d95bcebf7db-bf066087ecf5 users  40657 Jan 13 15:40 Makefile.in\r\n",
      "-rw-r--r--  1 s1a2-472d95bcebf7db-bf066087ecf5 users     76 Jan 13 15:40 PostInstall.cmake\r\n",
      "-rw-r--r--  1 s1a2-472d95bcebf7db-bf066087ecf5 users   4752 Jan 13 15:40 README.md\r\n",
      "-rwxr-xr-x  1 s1a2-472d95bcebf7db-bf066087ecf5 users  82319 Jan 13 15:40 RELEASE_NOTES.md\r\n",
      "-rw-r--r--  1 s1a2-472d95bcebf7db-bf066087ecf5 users  18621 Jan 13 15:40 acinclude.m4\r\n",
      "-rw-r--r--  1 s1a2-472d95bcebf7db-bf066087ecf5 users  43973 Jan 13 15:40 aclocal.m4\r\n",
      "-rw-r--r--  1 s1a2-472d95bcebf7db-bf066087ecf5 users   4298 Jan 13 15:40 cf\r\n",
      "-rw-r--r--  1 s1a2-472d95bcebf7db-bf066087ecf5 users   1974 Jan 13 15:40 cf.cmake\r\n",
      "drwxr-xr-x  3 s1a2-472d95bcebf7db-bf066087ecf5 users   4096 Jan 13 15:40 cmake\r\n",
      "-rw-r--r--  1 s1a2-472d95bcebf7db-bf066087ecf5 users   1042 Jan 13 15:40 cmake_uninstall.cmake.in\r\n",
      "-rwxr-xr-x  1 s1a2-472d95bcebf7db-bf066087ecf5 users   7333 Jan 13 15:40 compile\r\n",
      "-rwxr-xr-x  1 s1a2-472d95bcebf7db-bf066087ecf5 users  42938 Jan 13 15:40 config.guess\r\n",
      "-rw-r--r--  1 s1a2-472d95bcebf7db-bf066087ecf5 users   8986 Jan 13 15:40 config.h.cmake.in\r\n",
      "-rw-r--r--  1 s1a2-472d95bcebf7db-bf066087ecf5 users  14330 Jan 13 15:40 config.h.in\r\n",
      "-rwxr-xr-x  1 s1a2-472d95bcebf7db-bf066087ecf5 users  35987 Jan 13 15:40 config.sub\r\n",
      "-rwxr-xr-x  1 s1a2-472d95bcebf7db-bf066087ecf5 users 641725 Jan 13 15:40 configure\r\n",
      "-rw-r--r--  1 s1a2-472d95bcebf7db-bf066087ecf5 users  51320 Jan 13 15:40 configure.ac\r\n",
      "-rwxr-xr-x  1 s1a2-472d95bcebf7db-bf066087ecf5 users  23566 Jan 13 15:40 depcomp\r\n",
      "drwxr-xr-x  4 s1a2-472d95bcebf7db-bf066087ecf5 users   4096 Jan 13 15:40 docs\r\n",
      "-rw-r--r--  1 s1a2-472d95bcebf7db-bf066087ecf5 users  19722 Jan 13 15:40 dods.m4\r\n",
      "drwxr-xr-x  4 s1a2-472d95bcebf7db-bf066087ecf5 users   4096 Jan 13 15:40 examples\r\n",
      "drwxr-xr-x  2 s1a2-472d95bcebf7db-bf066087ecf5 users   4096 Jan 13 15:40 h5_test\r\n",
      "drwxr-xr-x  2 s1a2-472d95bcebf7db-bf066087ecf5 users   4096 Jan 13 15:40 include\r\n",
      "-rwxr-xr-x  1 s1a2-472d95bcebf7db-bf066087ecf5 users  14675 Jan 13 15:40 install-sh\r\n",
      "-rw-r--r--  1 s1a2-472d95bcebf7db-bf066087ecf5 users    469 Jan 13 15:40 lib_flags.am\r\n",
      "drwxr-xr-x  3 s1a2-472d95bcebf7db-bf066087ecf5 users   4096 Jan 13 15:40 libdap2\r\n",
      "drwxr-xr-x  2 s1a2-472d95bcebf7db-bf066087ecf5 users   4096 Jan 13 15:40 libdispatch\r\n",
      "drwxr-xr-x  2 s1a2-472d95bcebf7db-bf066087ecf5 users   4096 Jan 13 15:40 liblib\r\n",
      "-rw-r--r--  1 s1a2-472d95bcebf7db-bf066087ecf5 users    835 Jan 13 15:40 libnetcdf.settings.in\r\n",
      "drwxr-xr-x  2 s1a2-472d95bcebf7db-bf066087ecf5 users   4096 Jan 13 15:40 libsrc\r\n",
      "drwxr-xr-x  2 s1a2-472d95bcebf7db-bf066087ecf5 users   4096 Jan 13 15:40 libsrc4\r\n",
      "drwxr-xr-x  2 s1a2-472d95bcebf7db-bf066087ecf5 users   4096 Jan 13 15:40 libsrcp\r\n",
      "-rw-r--r--  1 s1a2-472d95bcebf7db-bf066087ecf5 users 324089 Jan 13 15:40 ltmain.sh\r\n",
      "drwxr-xr-x  2 s1a2-472d95bcebf7db-bf066087ecf5 users   4096 Jan 13 15:40 m4\r\n",
      "-rwxr-xr-x  1 s1a2-472d95bcebf7db-bf066087ecf5 users    242 Jan 13 15:40 mclean\r\n",
      "-rwxr-xr-x  1 s1a2-472d95bcebf7db-bf066087ecf5 users   6872 Jan 13 15:40 missing\r\n",
      "-rw-r--r--  1 s1a2-472d95bcebf7db-bf066087ecf5 users   5620 Jan 13 15:40 nc-config.cmake.in\r\n",
      "-rw-r--r--  1 s1a2-472d95bcebf7db-bf066087ecf5 users   5072 Jan 13 15:40 nc-config.in\r\n",
      "drwxr-xr-x  2 s1a2-472d95bcebf7db-bf066087ecf5 users   4096 Jan 13 15:40 nc_test\r\n",
      "drwxr-xr-x  2 s1a2-472d95bcebf7db-bf066087ecf5 users   8192 Jan 13 15:40 nc_test4\r\n",
      "drwxr-xr-x 11 s1a2-472d95bcebf7db-bf066087ecf5 users   4096 Jan 13 15:40 ncdap_test\r\n",
      "drwxr-xr-x  4 s1a2-472d95bcebf7db-bf066087ecf5 users   8192 Jan 13 15:40 ncdump\r\n",
      "drwxr-xr-x  2 s1a2-472d95bcebf7db-bf066087ecf5 users   4096 Jan 13 15:40 ncgen\r\n",
      "drwxr-xr-x  2 s1a2-472d95bcebf7db-bf066087ecf5 users   4096 Jan 13 15:40 ncgen3\r\n",
      "drwxr-xr-x  2 s1a2-472d95bcebf7db-bf066087ecf5 users   4096 Jan 13 15:40 nctest\r\n",
      "-rw-r--r--  1 s1a2-472d95bcebf7db-bf066087ecf5 users   1124 Jan 13 15:40 netCDFConfig.cmake.in\r\n",
      "-rw-r--r--  1 s1a2-472d95bcebf7db-bf066087ecf5 users    275 Jan 13 15:40 netcdf.pc.in\r\n",
      "drwxr-xr-x  2 s1a2-472d95bcebf7db-bf066087ecf5 users   4096 Jan 13 15:40 oc2\r\n",
      "-rwxr-xr-x  1 s1a2-472d95bcebf7db-bf066087ecf5 users   2719 Jan 13 15:40 postinstall.sh.in\r\n",
      "-rwxr-xr-x  1 s1a2-472d95bcebf7db-bf066087ecf5 users   4640 Jan 13 15:40 test-driver\r\n",
      "-rw-r--r--  1 s1a2-472d95bcebf7db-bf066087ecf5 users    281 Jan 13 15:40 test_prog.F\r\n",
      "-rw-r--r--  1 s1a2-472d95bcebf7db-bf066087ecf5 users    268 Jan 13 15:40 test_prog.c\r\n",
      "-rw-r--r--  1 s1a2-472d95bcebf7db-bf066087ecf5 users    285 Jan 13 15:40 test_prog.f90\r\n",
      "-rw-r--r--  1 s1a2-472d95bcebf7db-bf066087ecf5 users    729 Jan 13 15:40 wjna\r\n"
     ]
    }
   ],
   "source": [
    "if not isNETCDFInstalled:\n",
    "    !ls -al $netcdfSrcDir"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "# HDF5 support is useful for NETCDF4 and should be built first"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Run Configure for the HDF5 source directory"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 13,
   "metadata": {
    "collapsed": false,
    "scrolled": true
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "checking for a BSD-compatible install... /bin/install -c\n",
      "checking whether build environment is sane... yes\n",
      "checking for a thread-safe mkdir -p... /bin/mkdir -p\n",
      "checking for gawk... gawk\n",
      "checking whether make sets $(MAKE)... yes\n",
      "checking whether make supports nested variables... yes\n",
      "checking whether make supports nested variables... (cached) yes\n",
      "checking whether to enable maintainer-specific portions of Makefiles... no\n",
      "checking build system type... x86_64-unknown-linux-gnu\n",
      "checking host system type... x86_64-unknown-linux-gnu\n",
      "checking shell variables initial values... done\n",
      "checking if basename works... yes\n",
      "checking if xargs works... yes\n",
      "checking for cached host... none\n",
      "checking for config x86_64-unknown-linux-gnu... no\n",
      "checking for config x86_64-unknown-linux-gnu... no\n",
      "checking for config unknown-linux-gnu... no\n",
      "checking for config unknown-linux-gnu... no\n",
      "checking for config x86_64-linux-gnu... no\n",
      "checking for config x86_64-linux-gnu... no\n",
      "checking for config x86_64-unknown... no\n",
      "checking for config linux-gnu... found\n",
      "compiler 'gcc' is GNU gcc-4.8.3\n",
      "checking for config /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/config/site-specific/host-yp-spark-dal09-env5-0028... no\n",
      "checking for gcc... gcc\n",
      "checking whether the C compiler works... yes\n",
      "checking for C compiler default output file name... a.out\n",
      "checking for suffix of executables... \n",
      "checking whether we are cross compiling... no\n",
      "checking for suffix of object files... o\n",
      "checking whether we are using the GNU C compiler... yes\n",
      "checking whether gcc accepts -g... yes\n",
      "checking for gcc option to accept ISO C89... none needed\n",
      "checking whether gcc understands -c and -o together... yes\n",
      "checking for style of include used by make... GNU\n",
      "checking dependency style of gcc... gcc3\n",
      "checking if unsupported combinations of configure options are allowed... no\n",
      "checking if Fortran interface enabled... no\n",
      "checking if Fortran 2003 interface enabled... no\n",
      "checking whether we are using the GNU C++ compiler... yes\n",
      "checking whether g++ accepts -g... yes\n",
      "checking dependency style of g++... gcc3\n",
      "checking how to run the C++ preprocessor... g++ -E\n",
      "checking if c++ interface enabled... no\n",
      "checking if high level library is enabled... yes\n",
      "checking for perl... perl\n",
      "checking for ar... ar\n",
      "checking whether make sets $(MAKE)... (cached) yes\n",
      "checking for tr... /bin/tr\n",
      "checking if srcdir= and time commands work together... no\n",
      "checking how to print strings... printf\n",
      "checking for a sed that does not truncate output... /bin/sed\n",
      "checking for grep that handles long lines and -e... /bin/grep\n",
      "checking for egrep... /bin/grep -E\n",
      "checking for fgrep... /bin/grep -F\n",
      "checking for ld used by gcc... /bin/ld\n",
      "checking if the linker (/bin/ld) is GNU ld... yes\n",
      "checking for BSD- or MS-compatible name lister (nm)... /bin/nm -B\n",
      "checking the name lister (/bin/nm -B) interface... BSD nm\n",
      "checking whether ln -s works... yes\n",
      "checking the maximum length of command line arguments... 1572864\n",
      "checking whether the shell understands some XSI constructs... yes\n",
      "checking whether the shell understands \"+=\"... yes\n",
      "checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop\n",
      "checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop\n",
      "checking for /bin/ld option to reload object files... -r\n",
      "checking for objdump... objdump\n",
      "checking how to recognize dependent libraries... pass_all\n",
      "checking for dlltool... no\n",
      "checking how to associate runtime and link libraries... printf %s\\n\n",
      "checking for archiver @FILE support... @\n",
      "checking for strip... strip\n",
      "checking for ranlib... ranlib\n",
      "checking command to parse /bin/nm -B output from gcc object... ok\n",
      "checking for sysroot... no\n",
      "checking for mt... no\n",
      "checking if : is a manifest tool... no\n",
      "checking how to run the C preprocessor... gcc -E\n",
      "checking for ANSI C header files... yes\n",
      "checking for sys/types.h... yes\n",
      "checking for sys/stat.h... yes\n",
      "checking for stdlib.h... yes\n",
      "checking for string.h... yes\n",
      "checking for memory.h... yes\n",
      "checking for strings.h... yes\n",
      "checking for inttypes.h... yes\n",
      "checking for stdint.h... yes\n",
      "checking for unistd.h... yes\n",
      "checking for dlfcn.h... yes\n",
      "checking for objdir... .libs\n",
      "checking if gcc supports -fno-rtti -fno-exceptions... no\n",
      "checking for gcc option to produce PIC... -fPIC -DPIC\n",
      "checking if gcc PIC flag -fPIC -DPIC works... yes\n",
      "checking if gcc static flag -static works... no\n",
      "checking if gcc supports -c -o file.o... yes\n",
      "checking if gcc supports -c -o file.o... (cached) yes\n",
      "checking whether the gcc linker (/bin/ld -m elf_x86_64) supports shared libraries... yes\n",
      "checking whether -lc should be explicitly linked in... no\n",
      "checking dynamic linker characteristics... GNU/Linux ld.so\n",
      "checking how to hardcode library paths into programs... immediate\n",
      "checking for shl_load... no\n",
      "checking for shl_load in -ldld... no\n",
      "checking for dlopen... no\n",
      "checking for dlopen in -ldl... yes\n",
      "checking whether a program can dlopen itself... yes\n",
      "checking whether a statically linked program can dlopen itself... yes\n",
      "checking whether stripping libraries is possible... yes\n",
      "checking if libtool supports shared libraries... yes\n",
      "checking whether to build shared libraries... yes\n",
      "checking whether to build static libraries... yes\n",
      "checking if we should install only statically linked executables... no\n",
      "checking if -Wl,-rpath should be used to link shared libs in nondefault directories... yes\n",
      "checking whether make will build with undefined variables... yes\n",
      "checking for production mode... production\n",
      "checking for ceil in -lm... yes\n",
      "checking for dlopen in -ldl... (cached) yes\n",
      "checking for ANSI C header files... (cached) yes\n",
      "checking whether time.h and sys/time.h may both be included... yes\n",
      "checking sys/resource.h usability... yes\n",
      "checking sys/resource.h presence... yes\n",
      "checking for sys/resource.h... yes\n",
      "checking sys/time.h usability... yes\n",
      "checking sys/time.h presence... yes\n",
      "checking for sys/time.h... yes\n",
      "checking for unistd.h... (cached) yes\n",
      "checking sys/ioctl.h usability... yes\n",
      "checking sys/ioctl.h presence... yes\n",
      "checking for sys/ioctl.h... yes\n",
      "checking for sys/stat.h... (cached) yes\n",
      "checking sys/socket.h usability... yes\n",
      "checking sys/socket.h presence... yes\n",
      "checking for sys/socket.h... yes\n",
      "checking for sys/types.h... (cached) yes\n",
      "checking stddef.h usability... yes\n",
      "checking stddef.h presence... yes\n",
      "checking for stddef.h... yes\n",
      "checking setjmp.h usability... yes\n",
      "checking setjmp.h presence... yes\n",
      "checking for setjmp.h... yes\n",
      "checking features.h usability... yes\n",
      "checking features.h presence... yes\n",
      "checking for features.h... yes\n",
      "checking dirent.h usability... yes\n",
      "checking dirent.h presence... yes\n",
      "checking for dirent.h... yes\n",
      "checking for stdint.h... (cached) yes\n",
      "checking mach/mach_time.h usability... no\n",
      "checking mach/mach_time.h presence... no\n",
      "checking for mach/mach_time.h... no\n",
      "checking io.h usability... no\n",
      "checking io.h presence... no\n",
      "checking for io.h... no\n",
      "checking winsock2.h usability... no\n",
      "checking winsock2.h presence... no\n",
      "checking for winsock2.h... no\n",
      "checking sys/timeb.h usability... yes\n",
      "checking sys/timeb.h presence... yes\n",
      "checking for sys/timeb.h... yes\n",
      "checking if libtool needs -no-undefined flag to build shared libraries... no\n",
      "checking for _FILE_OFFSET_BITS value needed for large files... no\n",
      "checking for off_t... yes\n",
      "checking for size_t... yes\n",
      "checking for ssize_t... yes\n",
      "checking for ptrdiff_t... yes\n",
      "checking whether byte ordering is bigendian... no\n",
      "checking size of char... 1\n",
      "checking size of short... 2\n",
      "checking size of int... 4\n",
      "checking size of unsigned... 4\n",
      "checking size of long... 8\n",
      "checking size of long long... 8\n",
      "checking size of __int64... 0\n",
      "checking size of float... 4\n",
      "checking size of double... 8\n",
      "checking size of long double... 16\n",
      "checking size of int8_t... 1\n",
      "checking size of uint8_t... 1\n",
      "checking size of int_least8_t... 1\n",
      "checking size of uint_least8_t... 1\n",
      "checking size of int_fast8_t... 1\n",
      "checking size of uint_fast8_t... 1\n",
      "checking size of int16_t... 2\n",
      "checking size of uint16_t... 2\n",
      "checking size of int_least16_t... 2\n",
      "checking size of uint_least16_t... 2\n",
      "checking size of int_fast16_t... 8\n",
      "checking size of uint_fast16_t... 8\n",
      "checking size of int32_t... 4\n",
      "checking size of uint32_t... 4\n",
      "checking size of int_least32_t... 4\n",
      "checking size of uint_least32_t... 4\n",
      "checking size of int_fast32_t... 8\n",
      "checking size of uint_fast32_t... 8\n",
      "checking size of int64_t... 8\n",
      "checking size of uint64_t... 8\n",
      "checking size of int_least64_t... 8\n",
      "checking size of uint_least64_t... 8\n",
      "checking size of int_fast64_t... 8\n",
      "checking size of uint_fast64_t... 8\n",
      "checking size of size_t... 8\n",
      "checking size of ssize_t... 8\n",
      "checking size of ptrdiff_t... 8\n",
      "checking size of off_t... 8\n",
      "checking if dev_t is scalar... yes\n",
      "checking for dmalloc library... suppressed\n",
      "checking zlib.h usability... yes\n",
      "checking zlib.h presence... yes\n",
      "checking for zlib.h... yes\n",
      "checking for compress2 in -lz... yes\n",
      "checking for compress2... yes\n",
      "checking for szlib... suppressed\n",
      "checking for thread safe support... no\n",
      "checking whether CLOCK_MONOTONIC is declared... yes\n",
      "checking for tm_gmtoff in struct tm... yes\n",
      "checking for global timezone variable... yes\n",
      "checking for st_blocks in struct stat... yes\n",
      "checking for _getvideoconfig... no\n",
      "checking for gettextinfo... no\n",
      "checking for GetConsoleScreenBufferInfo... no\n",
      "checking for _scrsize... no\n",
      "checking for ioctl... yes\n",
      "checking for struct videoconfig... no\n",
      "checking for struct text_info... no\n",
      "checking for TIOCGWINSZ... yes\n",
      "checking for TIOCGETD... yes\n",
      "checking for library containing clock_gettime... none required\n",
      "checking for alarm... yes\n",
      "checking for clock_gettime... yes\n",
      "checking for difftime... yes\n",
      "checking for fork... yes\n",
      "checking for frexpf... yes\n",
      "checking for frexpl... yes\n",
      "checking for gethostname... yes\n",
      "checking for getpwuid... yes\n",
      "checking for getrusage... yes\n",
      "checking for gettimeofday... yes\n",
      "checking for lstat... yes\n",
      "checking for rand_r... yes\n",
      "checking for random... yes\n",
      "checking for setsysinfo... no\n",
      "checking for signal... yes\n",
      "checking for longjmp... yes\n",
      "checking for setjmp... yes\n",
      "checking for siglongjmp... yes\n",
      "checking for sigsetjmp... no\n",
      "checking for sigprocmask... yes\n",
      "checking for snprintf... yes\n",
      "checking for srandom... yes\n",
      "checking for strdup... yes\n",
      "checking for symlink... yes\n",
      "checking for system... yes\n",
      "checking for tmpfile... yes\n",
      "checking for asprintf... yes\n",
      "checking for vasprintf... yes\n",
      "checking for vsnprintf... yes\n",
      "checking for waitpid... yes\n",
      "checking for an ANSI C-conforming const... yes\n",
      "checking if the compiler understands  __inline__... yes\n",
      "checking if the compiler understands __inline... yes\n",
      "checking if the compiler understands inline... yes\n",
      "checking for __attribute__ extension... yes\n",
      "checking for __func__ extension... yes\n",
      "checking for __FUNCTION__ extension... yes\n",
      "checking for C99 designated initialization support... yes\n",
      "checking how to print long long... %ld and %lu\n",
      "checking Threads support system scope... yes\n",
      "checking for debug flags... none\n",
      "checking whether function stack tracking is enabled... no\n",
      "checking whether metadata trace file code is enabled... no\n",
      "checking for API tracing... no\n",
      "checking for instrumented library... no\n",
      "checking whether to clear file buffers... yes\n",
      "checking whether a memory checking tool will be used... no\n",
      "checking for parallel support files... skipped\n",
      "checking whether O_DIRECT is declared... yes\n",
      "checking for posix_memalign... yes\n",
      "checking if the direct I/O virtual file driver (VFD) is enabled... no\n",
      "checking for custom plugin default path definition... /usr/local/hdf5/lib/plugin\n",
      "checking whether exception handling functions is checked during data conversions... yes\n",
      "checking whether data accuracy is guaranteed during data conversions... yes\n",
      "checking if the machine has window style path name... no\n",
      "checking if using special algorithm to convert long double to (unsigned) long values... no\n",
      "checking if using special algorithm to convert (unsigned) long to long double values... no\n",
      "checking if correctly converting long double to (unsigned) long long values... yes\n",
      "checking if correctly converting (unsigned) long long to long double values... yes\n",
      "checking additional programs should be built... no\n",
      "checking if deprecated public symbols are available... yes\n",
      "checking which version of public symbols to use by default... v18\n",
      "checking whether to perform strict file format checks... no\n",
      "checking whether to have library information embedded in the executables... yes\n",
      "checking if alignment restrictions are strictly enforced... no\n",
      "configure: creating ./config.lt\n",
      "config.lt: creating libtool\n",
      "checking that generated files are newer than configure... done\n",
      "configure: creating ./config.status\n",
      "config.status: creating src/libhdf5.settings\n",
      "config.status: creating Makefile\n",
      "config.status: creating src/Makefile\n",
      "config.status: creating test/Makefile\n",
      "config.status: creating test/testcheck_version.sh\n",
      "config.status: creating test/testerror.sh\n",
      "config.status: creating test/H5srcdir_str.h\n",
      "config.status: creating test/testlibinfo.sh\n",
      "config.status: creating test/testlinks_env.sh\n",
      "config.status: creating test/test_plugin.sh\n",
      "config.status: creating testpar/Makefile\n",
      "config.status: creating tools/Makefile\n",
      "config.status: creating tools/h5dump/Makefile\n",
      "config.status: creating tools/h5dump/testh5dump.sh\n",
      "config.status: creating tools/h5dump/testh5dumppbits.sh\n",
      "config.status: creating tools/h5dump/testh5dumpxml.sh\n",
      "config.status: creating tools/h5ls/testh5ls.sh\n",
      "config.status: creating tools/h5import/Makefile\n",
      "config.status: creating tools/h5import/h5importtestutil.sh\n",
      "config.status: creating tools/h5diff/Makefile\n",
      "config.status: creating tools/h5diff/testh5diff.sh\n",
      "config.status: creating tools/h5diff/testph5diff.sh\n",
      "config.status: creating tools/h5jam/Makefile\n",
      "config.status: creating tools/h5jam/testh5jam.sh\n",
      "config.status: creating tools/h5repack/Makefile\n",
      "config.status: creating tools/h5repack/h5repack.sh\n",
      "config.status: creating tools/h5repack/h5repack_plugin.sh\n",
      "config.status: creating tools/h5ls/Makefile\n",
      "config.status: creating tools/h5copy/Makefile\n",
      "config.status: creating tools/h5copy/testh5copy.sh\n",
      "config.status: creating tools/lib/Makefile\n",
      "config.status: creating tools/misc/Makefile\n",
      "config.status: creating tools/misc/h5cc\n",
      "config.status: creating tools/misc/testh5mkgrp.sh\n",
      "config.status: creating tools/misc/testh5repart.sh\n",
      "config.status: creating tools/h5stat/testh5stat.sh\n",
      "config.status: creating tools/h5stat/Makefile\n",
      "config.status: creating tools/perform/Makefile\n",
      "config.status: creating examples/Makefile\n",
      "config.status: creating examples/run-c-ex.sh\n",
      "config.status: creating examples/testh5cc.sh\n",
      "config.status: creating c++/Makefile\n",
      "config.status: creating c++/src/Makefile\n",
      "config.status: creating c++/src/h5c++\n",
      "config.status: creating c++/test/Makefile\n",
      "config.status: creating c++/test/H5srcdir_str.h\n",
      "config.status: creating c++/examples/Makefile\n",
      "config.status: creating c++/examples/run-c++-ex.sh\n",
      "config.status: creating c++/examples/testh5c++.sh\n",
      "config.status: creating fortran/Makefile\n",
      "config.status: creating fortran/src/h5fc\n",
      "config.status: creating fortran/src/Makefile\n",
      "config.status: creating fortran/test/Makefile\n",
      "config.status: creating fortran/testpar/Makefile\n",
      "config.status: creating fortran/examples/Makefile\n",
      "config.status: creating fortran/examples/run-fortran-ex.sh\n",
      "config.status: creating fortran/examples/testh5fc.sh\n",
      "config.status: creating hl/Makefile\n",
      "config.status: creating hl/src/Makefile\n",
      "config.status: creating hl/test/Makefile\n",
      "config.status: creating hl/test/H5srcdir_str.h\n",
      "config.status: creating hl/tools/Makefile\n",
      "config.status: creating hl/tools/gif2h5/Makefile\n",
      "config.status: creating hl/tools/gif2h5/h52giftest.sh\n",
      "config.status: creating hl/examples/Makefile\n",
      "config.status: creating hl/examples/run-hlc-ex.sh\n",
      "config.status: creating hl/c++/Makefile\n",
      "config.status: creating hl/c++/src/Makefile\n",
      "config.status: creating hl/c++/test/Makefile\n",
      "config.status: creating hl/c++/examples/Makefile\n",
      "config.status: creating hl/c++/examples/run-hlc++-ex.sh\n",
      "config.status: creating hl/fortran/Makefile\n",
      "config.status: creating hl/fortran/src/Makefile\n",
      "config.status: creating hl/fortran/test/Makefile\n",
      "config.status: creating hl/fortran/examples/Makefile\n",
      "config.status: creating hl/fortran/examples/run-hlfortran-ex.sh\n",
      "config.status: creating src/H5config.h\n",
      "config.status: executing pubconf commands\n",
      "creating src/H5pubconf.h\n",
      "Post process src/libhdf5.settings\n",
      "config.status: executing depfiles commands\n",
      "config.status: executing libtool commands\n",
      "\t    SUMMARY OF THE HDF5 CONFIGURATION\n",
      "\t    =================================\n",
      "\n",
      "General Information:\n",
      "-------------------\n",
      "\t\t   HDF5 Version: 1.8.17\n",
      "\t\t  Configured on: Mon May 23 00:31:58 CDT 2016\n",
      "\t\t  Configured by: s1a2-472d95bcebf7db-bf066087ecf5@yp-spark-dal09-env5-0028\n",
      "\t\t Configure mode: production\n",
      "\t\t    Host system: x86_64-unknown-linux-gnu\n",
      "\t      Uname information: Linux yp-spark-dal09-env5-0028 3.10.0-229.14.1.el7.x86_64 #1 SMP Tue Sep 15 15:05:51 UTC 2015 x86_64 x86_64 x86_64 GNU/Linux\n",
      "\t\t       Byte sex: little-endian\n",
      "\t\t      Libraries: static, shared\n",
      "\t     Installation point: /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5\n",
      "\n",
      "Compiling Options:\n",
      "------------------\n",
      "               Compilation Mode: production\n",
      "                     C Compiler: /bin/gcc ( gcc (GCC) 4.8.3 20140911 )\n",
      "                         CFLAGS: \n",
      "                      H5_CFLAGS: -std=c99 -pedantic -Wall -Wextra -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -Wfloat-equal -Wmissing-format-attribute -Wmissing-noreturn -Wpacked -Wdisabled-optimization -Wformat=2 -Wunreachable-code -Wendif-labels -Wdeclaration-after-statement -Wold-style-definition -Winvalid-pch -Wvariadic-macros -Winit-self -Wmissing-include-dirs -Wswitch-default -Wswitch-enum -Wunused-macros -Wunsafe-loop-optimizations -Wc++-compat -Wstrict-overflow -Wlogical-op -Wlarger-than=2048 -Wvla -Wsync-nand -Wframe-larger-than=16384 -Wpacked-bitfield-compat -Wstrict-overflow=5 -Wjump-misses-init -Wdouble-promotion -Wsuggest-attribute=const -Wtrampolines -Wstack-usage=8192 -Wvector-operation-performance -Wsuggest-attribute=pure -Wsuggest-attribute=noreturn -Wsuggest-attribute=format -O3\n",
      "                      AM_CFLAGS: \n",
      "                       CPPFLAGS: \n",
      "                    H5_CPPFLAGS: -D_GNU_SOURCE -D_POSIX_C_SOURCE=200112L   -DNDEBUG -UH5_DEBUG_API\n",
      "                    AM_CPPFLAGS: \n",
      "               Shared C Library: yes\n",
      "               Static C Library: yes\n",
      "  Statically Linked Executables: no\n",
      "                        LDFLAGS: \n",
      "                     H5_LDFLAGS: \n",
      "                     AM_LDFLAGS: \n",
      " \t \tExtra libraries: -lz -ldl -lm \n",
      " \t\t       Archiver: ar\n",
      " \t\t \t Ranlib: ranlib\n",
      " \t      Debugged Packages: \n",
      "\t\t    API Tracing: no\n",
      "\n",
      "Languages:\n",
      "----------\n",
      "                        Fortran: no\n",
      "\n",
      "                            C++: no\n",
      "\n",
      "Features:\n",
      "---------\n",
      "                  Parallel HDF5: no\n",
      "             High Level library: yes\n",
      "                   Threadsafety: no\n",
      "            Default API Mapping: v18\n",
      " With Deprecated Public Symbols: yes\n",
      "         I/O filters (external): deflate(zlib)\n",
      "                            MPE: no\n",
      "                     Direct VFD: no\n",
      "                        dmalloc: no\n",
      "Clear file buffers before write: yes\n",
      "           Using memory checker: no\n",
      "         Function Stack Tracing: no\n",
      "      Strict File Format Checks: no\n",
      "   Optimization Instrumentation: no\n"
     ]
    }
   ],
   "source": [
    "if not isHDF5Installed:\n",
    "    # Setup Configuration Info\n",
    "    !$hdf5SrcDir/configure --prefix=$hdf5Dir/hdf5"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 14,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "if not isHDF5Installed:\n",
    "    # Let's make the build and install process as quiet as possible.  Removing all of the H5_CFFLAGS compiler warning settings\n",
    "    !rm config.status.new 2>/dev/null\n",
    "    !cat config.status | sed -n '1h;1!H;${;g;s/\"\\-std.*O3\"/\"\\-std=c99\"/g;p;}' | sed 's/&amp;/\\&/g' | sed 's/&lt;/\\</g' | sed 's/&gt;/\\>/g' > config.status.new\n",
    "    !rm config.status\n",
    "    !mv config.status.new config.status"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Let's build HDF5"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 15,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "make: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work'\n",
      " /bin/sh ./config.status\n",
      "config.status: creating src/libhdf5.settings\n",
      "config.status: creating Makefile\n",
      "config.status: creating src/Makefile\n",
      "config.status: creating test/Makefile\n",
      "config.status: creating test/testcheck_version.sh\n",
      "config.status: creating test/testerror.sh\n",
      "config.status: creating test/H5srcdir_str.h\n",
      "config.status: creating test/testlibinfo.sh\n",
      "config.status: creating test/testlinks_env.sh\n",
      "config.status: creating test/test_plugin.sh\n",
      "config.status: creating testpar/Makefile\n",
      "config.status: creating tools/Makefile\n",
      "config.status: creating tools/h5dump/Makefile\n",
      "config.status: creating tools/h5dump/testh5dump.sh\n",
      "config.status: creating tools/h5dump/testh5dumppbits.sh\n",
      "config.status: creating tools/h5dump/testh5dumpxml.sh\n",
      "config.status: creating tools/h5ls/testh5ls.sh\n",
      "config.status: creating tools/h5import/Makefile\n",
      "config.status: creating tools/h5import/h5importtestutil.sh\n",
      "config.status: creating tools/h5diff/Makefile\n",
      "config.status: creating tools/h5diff/testh5diff.sh\n",
      "config.status: creating tools/h5diff/testph5diff.sh\n",
      "config.status: creating tools/h5jam/Makefile\n",
      "config.status: creating tools/h5jam/testh5jam.sh\n",
      "config.status: creating tools/h5repack/Makefile\n",
      "config.status: creating tools/h5repack/h5repack.sh\n",
      "config.status: creating tools/h5repack/h5repack_plugin.sh\n",
      "config.status: creating tools/h5ls/Makefile\n",
      "config.status: creating tools/h5copy/Makefile\n",
      "config.status: creating tools/h5copy/testh5copy.sh\n",
      "config.status: creating tools/lib/Makefile\n",
      "config.status: creating tools/misc/Makefile\n",
      "config.status: creating tools/misc/h5cc\n",
      "config.status: creating tools/misc/testh5mkgrp.sh\n",
      "config.status: creating tools/misc/testh5repart.sh\n",
      "config.status: creating tools/h5stat/testh5stat.sh\n",
      "config.status: creating tools/h5stat/Makefile\n",
      "config.status: creating tools/perform/Makefile\n",
      "config.status: creating examples/Makefile\n",
      "config.status: creating examples/run-c-ex.sh\n",
      "config.status: creating examples/testh5cc.sh\n",
      "config.status: creating c++/Makefile\n",
      "config.status: creating c++/src/Makefile\n",
      "config.status: creating c++/src/h5c++\n",
      "config.status: creating c++/test/Makefile\n",
      "config.status: creating c++/test/H5srcdir_str.h\n",
      "config.status: creating c++/examples/Makefile\n",
      "config.status: creating c++/examples/run-c++-ex.sh\n",
      "config.status: creating c++/examples/testh5c++.sh\n",
      "config.status: creating fortran/Makefile\n",
      "config.status: creating fortran/src/h5fc\n",
      "config.status: creating fortran/src/Makefile\n",
      "config.status: creating fortran/test/Makefile\n",
      "config.status: creating fortran/testpar/Makefile\n",
      "config.status: creating fortran/examples/Makefile\n",
      "config.status: creating fortran/examples/run-fortran-ex.sh\n",
      "config.status: creating fortran/examples/testh5fc.sh\n",
      "config.status: creating hl/Makefile\n",
      "config.status: creating hl/src/Makefile\n",
      "config.status: creating hl/test/Makefile\n",
      "config.status: creating hl/test/H5srcdir_str.h\n",
      "config.status: creating hl/tools/Makefile\n",
      "config.status: creating hl/tools/gif2h5/Makefile\n",
      "config.status: creating hl/tools/gif2h5/h52giftest.sh\n",
      "config.status: creating hl/examples/Makefile\n",
      "config.status: creating hl/examples/run-hlc-ex.sh\n",
      "config.status: creating hl/c++/Makefile\n",
      "config.status: creating hl/c++/src/Makefile\n",
      "config.status: creating hl/c++/test/Makefile\n",
      "config.status: creating hl/c++/examples/Makefile\n",
      "config.status: creating hl/c++/examples/run-hlc++-ex.sh\n",
      "config.status: creating hl/fortran/Makefile\n",
      "config.status: creating hl/fortran/src/Makefile\n",
      "config.status: creating hl/fortran/test/Makefile\n",
      "config.status: creating hl/fortran/examples/Makefile\n",
      "config.status: creating hl/fortran/examples/run-hlfortran-ex.sh\n",
      "config.status: creating src/H5config.h\n",
      "config.status: src/H5config.h is unchanged\n",
      "config.status: executing pubconf commands\n",
      "creating src/H5pubconf.h\n",
      "src/H5pubconf.h is unchanged\n",
      "Post process src/libhdf5.settings\n",
      "config.status: executing depfiles commands\n",
      "config.status: executing libtool commands\n",
      "make: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work'\n",
      "make: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work'\n",
      "Making all in src\n",
      "make[1]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/src'\n",
      "make  all-am\n",
      "make[2]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/src'\n",
      "  CC       H5.lo\n",
      "  CC       H5checksum.lo\n",
      "  CC       H5system.lo\n",
      "  CC       H5dbg.lo\n",
      "  CC       H5trace.lo\n",
      "  CC       H5timer.lo\n",
      "  CC       H5A.lo\n",
      "  CC       H5Abtree2.lo\n",
      "  CC       H5Adeprec.lo\n",
      "  CC       H5Adense.lo\n",
      "  CC       H5Aint.lo\n",
      "  CC       H5Atest.lo\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Aint.c:\u001b[m\u001b[K In function '\u001b[01m\u001b[KH5A_create\u001b[m\u001b[K':\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Aint.c:202:5:\u001b[m\u001b[K \u001b[01;35m\u001b[Kwarning: \u001b[m\u001b[Kpassing argument 1 of '\u001b[01m\u001b[KH5T_copy\u001b[m\u001b[K' discards '\u001b[01m\u001b[Kconst\u001b[m\u001b[K' qualifier from pointer target type [enabled by default]\n",
      "     if(NULL == (attr->shared->dt = H5T_copy(type, H5T_COPY_ALL)))\n",
      "\u001b[01;32m\u001b[K     ^\u001b[m\u001b[K\n",
      "In file included from \u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Oprivate.h:41:0\u001b[m\u001b[K,\n",
      "                 from \u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Aprivate.h:27\u001b[m\u001b[K,\n",
      "                 from \u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Apkg.h:39\u001b[m\u001b[K,\n",
      "                 from \u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Aint.c:39\u001b[m\u001b[K:\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Tprivate.h:109:15:\u001b[m\u001b[K \u001b[01;36m\u001b[Knote: \u001b[m\u001b[Kexpected '\u001b[01m\u001b[Kstruct H5T_t *\u001b[m\u001b[K' but argument is of type '\u001b[01m\u001b[Kconst struct H5T_t *\u001b[m\u001b[K'\n",
      " H5_DLL H5T_t *H5T_copy(H5T_t *old_dt, H5T_copy_t method);\n",
      "\u001b[01;32m\u001b[K               ^\u001b[m\u001b[K\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Aint.c:\u001b[m\u001b[K In function '\u001b[01m\u001b[KH5A_write\u001b[m\u001b[K':\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Aint.c:529:13:\u001b[m\u001b[K \u001b[01;35m\u001b[Kwarning: \u001b[m\u001b[Kpassing argument 1 of '\u001b[01m\u001b[KH5T_copy\u001b[m\u001b[K' discards '\u001b[01m\u001b[Kconst\u001b[m\u001b[K' qualifier from pointer target type [enabled by default]\n",
      "             if((src_id = H5I_register(H5I_DATATYPE, H5T_copy(mem_type, H5T_COPY_ALL), FALSE)) < 0 ||\n",
      "\u001b[01;32m\u001b[K             ^\u001b[m\u001b[K\n",
      "In file included from \u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Oprivate.h:41:0\u001b[m\u001b[K,\n",
      "                 from \u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Aprivate.h:27\u001b[m\u001b[K,\n",
      "                 from \u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Apkg.h:39\u001b[m\u001b[K,\n",
      "                 from \u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Aint.c:39\u001b[m\u001b[K:\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Tprivate.h:109:15:\u001b[m\u001b[K \u001b[01;36m\u001b[Knote: \u001b[m\u001b[Kexpected '\u001b[01m\u001b[Kstruct H5T_t *\u001b[m\u001b[K' but argument is of type '\u001b[01m\u001b[Kconst struct H5T_t *\u001b[m\u001b[K'\n",
      " H5_DLL H5T_t *H5T_copy(H5T_t *old_dt, H5T_copy_t method);\n",
      "\u001b[01;32m\u001b[K               ^\u001b[m\u001b[K\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Aint.c:\u001b[m\u001b[K In function '\u001b[01m\u001b[KH5A_read\u001b[m\u001b[K':\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Aint.c:646:25:\u001b[m\u001b[K \u001b[01;35m\u001b[Kwarning: \u001b[m\u001b[Kpassing argument 1 of '\u001b[01m\u001b[KH5T_copy\u001b[m\u001b[K' discards '\u001b[01m\u001b[Kconst\u001b[m\u001b[K' qualifier from pointer target type [enabled by default]\n",
      "                         (dst_id = H5I_register(H5I_DATATYPE, H5T_copy(mem_type, H5T_COPY_ALL), FALSE)) < 0)\n",
      "\u001b[01;32m\u001b[K                         ^\u001b[m\u001b[K\n",
      "In file included from \u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Oprivate.h:41:0\u001b[m\u001b[K,\n",
      "                 from \u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Aprivate.h:27\u001b[m\u001b[K,\n",
      "                 from \u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Apkg.h:39\u001b[m\u001b[K,\n",
      "                 from \u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Aint.c:39\u001b[m\u001b[K:\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Tprivate.h:109:15:\u001b[m\u001b[K \u001b[01;36m\u001b[Knote: \u001b[m\u001b[Kexpected '\u001b[01m\u001b[Kstruct H5T_t *\u001b[m\u001b[K' but argument is of type '\u001b[01m\u001b[Kconst struct H5T_t *\u001b[m\u001b[K'\n",
      " H5_DLL H5T_t *H5T_copy(H5T_t *old_dt, H5T_copy_t method);\n",
      "\u001b[01;32m\u001b[K               ^\u001b[m\u001b[K\n",
      "  CC       H5AC.lo\n",
      "  CC       H5B.lo\n",
      "  CC       H5Bcache.lo\n",
      "  CC       H5Bdbg.lo\n",
      "  CC       H5B2.lo\n",
      "  CC       H5B2cache.lo\n",
      "  CC       H5B2dbg.lo\n",
      "  CC       H5B2hdr.lo\n",
      "  CC       H5B2int.lo\n",
      "  CC       H5B2stat.lo\n",
      "  CC       H5B2test.lo\n",
      "  CC       H5C.lo\n",
      "  CC       H5CS.lo\n",
      "  CC       H5Dbtree.lo\n",
      "  CC       H5D.lo\n",
      "  CC       H5Dchunk.lo\n",
      "  CC       H5Dcompact.lo\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Dchunk.c:\u001b[m\u001b[K In function '\u001b[01m\u001b[KH5D__chunk_copy\u001b[m\u001b[K':\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Dchunk.c:4831:9:\u001b[m\u001b[K \u001b[01;35m\u001b[Kwarning: \u001b[m\u001b[Kpassing argument 1 of '\u001b[01m\u001b[KH5T_copy\u001b[m\u001b[K' discards '\u001b[01m\u001b[Kconst\u001b[m\u001b[K' qualifier from pointer target type [enabled by default]\n",
      "         if(NULL == (dt_mem = H5T_copy(dt_src, H5T_COPY_TRANSIENT)))\n",
      "\u001b[01;32m\u001b[K         ^\u001b[m\u001b[K\n",
      "In file included from \u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Oprivate.h:41:0\u001b[m\u001b[K,\n",
      "                 from \u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Dprivate.h:27\u001b[m\u001b[K,\n",
      "                 from \u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Dpkg.h:32\u001b[m\u001b[K,\n",
      "                 from \u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Dchunk.c:57\u001b[m\u001b[K:\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Tprivate.h:109:15:\u001b[m\u001b[K \u001b[01;36m\u001b[Knote: \u001b[m\u001b[Kexpected '\u001b[01m\u001b[Kstruct H5T_t *\u001b[m\u001b[K' but argument is of type '\u001b[01m\u001b[Kconst struct H5T_t *\u001b[m\u001b[K'\n",
      " H5_DLL H5T_t *H5T_copy(H5T_t *old_dt, H5T_copy_t method);\n",
      "\u001b[01;32m\u001b[K               ^\u001b[m\u001b[K\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Dchunk.c:4839:9:\u001b[m\u001b[K \u001b[01;35m\u001b[Kwarning: \u001b[m\u001b[Kpassing argument 1 of '\u001b[01m\u001b[KH5T_copy\u001b[m\u001b[K' discards '\u001b[01m\u001b[Kconst\u001b[m\u001b[K' qualifier from pointer target type [enabled by default]\n",
      "         if(NULL == (dt_dst = H5T_copy(dt_src, H5T_COPY_TRANSIENT)))\n",
      "\u001b[01;32m\u001b[K         ^\u001b[m\u001b[K\n",
      "In file included from \u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Oprivate.h:41:0\u001b[m\u001b[K,\n",
      "                 from \u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Dprivate.h:27\u001b[m\u001b[K,\n",
      "                 from \u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Dpkg.h:32\u001b[m\u001b[K,\n",
      "                 from \u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Dchunk.c:57\u001b[m\u001b[K:\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Tprivate.h:109:15:\u001b[m\u001b[K \u001b[01;36m\u001b[Knote: \u001b[m\u001b[Kexpected '\u001b[01m\u001b[Kstruct H5T_t *\u001b[m\u001b[K' but argument is of type '\u001b[01m\u001b[Kconst struct H5T_t *\u001b[m\u001b[K'\n",
      " H5_DLL H5T_t *H5T_copy(H5T_t *old_dt, H5T_copy_t method);\n",
      "\u001b[01;32m\u001b[K               ^\u001b[m\u001b[K\n",
      "  CC       H5Dcontig.lo\n",
      "  CC       H5Ddbg.lo\n",
      "  CC       H5Ddeprec.lo\n",
      "  CC       H5Defl.lo\n",
      "  CC       H5Dfill.lo\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Dfill.c:\u001b[m\u001b[K In function '\u001b[01m\u001b[KH5D__fill\u001b[m\u001b[K':\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Dfill.c:234:13:\u001b[m\u001b[K \u001b[01;35m\u001b[Kwarning: \u001b[m\u001b[Kpassing argument 1 of '\u001b[01m\u001b[KH5T_copy\u001b[m\u001b[K' discards '\u001b[01m\u001b[Kconst\u001b[m\u001b[K' qualifier from pointer target type [enabled by default]\n",
      "             if((src_id = H5I_register(H5I_DATATYPE, H5T_copy(fill_type, H5T_COPY_ALL), FALSE)) < 0)\n",
      "\u001b[01;32m\u001b[K             ^\u001b[m\u001b[K\n",
      "In file included from \u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Oprivate.h:41:0\u001b[m\u001b[K,\n",
      "                 from \u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Dprivate.h:27\u001b[m\u001b[K,\n",
      "                 from \u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Dpkg.h:32\u001b[m\u001b[K,\n",
      "                 from \u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Dfill.c:37\u001b[m\u001b[K:\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Tprivate.h:109:15:\u001b[m\u001b[K \u001b[01;36m\u001b[Knote: \u001b[m\u001b[Kexpected '\u001b[01m\u001b[Kstruct H5T_t *\u001b[m\u001b[K' but argument is of type '\u001b[01m\u001b[Kconst struct H5T_t *\u001b[m\u001b[K'\n",
      " H5_DLL H5T_t *H5T_copy(H5T_t *old_dt, H5T_copy_t method);\n",
      "\u001b[01;32m\u001b[K               ^\u001b[m\u001b[K\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Dfill.c:237:13:\u001b[m\u001b[K \u001b[01;35m\u001b[Kwarning: \u001b[m\u001b[Kpassing argument 1 of '\u001b[01m\u001b[KH5T_copy\u001b[m\u001b[K' discards '\u001b[01m\u001b[Kconst\u001b[m\u001b[K' qualifier from pointer target type [enabled by default]\n",
      "             if((dst_id = H5I_register(H5I_DATATYPE, H5T_copy(buf_type, H5T_COPY_ALL), FALSE)) < 0)\n",
      "\u001b[01;32m\u001b[K             ^\u001b[m\u001b[K\n",
      "In file included from \u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Oprivate.h:41:0\u001b[m\u001b[K,\n",
      "                 from \u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Dprivate.h:27\u001b[m\u001b[K,\n",
      "                 from \u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Dpkg.h:32\u001b[m\u001b[K,\n",
      "                 from \u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Dfill.c:37\u001b[m\u001b[K:\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Tprivate.h:109:15:\u001b[m\u001b[K \u001b[01;36m\u001b[Knote: \u001b[m\u001b[Kexpected '\u001b[01m\u001b[Kstruct H5T_t *\u001b[m\u001b[K' but argument is of type '\u001b[01m\u001b[Kconst struct H5T_t *\u001b[m\u001b[K'\n",
      " H5_DLL H5T_t *H5T_copy(H5T_t *old_dt, H5T_copy_t method);\n",
      "\u001b[01;32m\u001b[K               ^\u001b[m\u001b[K\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Dfill.c:\u001b[m\u001b[K In function '\u001b[01m\u001b[KH5D__fill_init\u001b[m\u001b[K':\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Dfill.c:407:13:\u001b[m\u001b[K \u001b[01;35m\u001b[Kwarning: \u001b[m\u001b[Kpassing argument 1 of '\u001b[01m\u001b[KH5T_copy\u001b[m\u001b[K' discards '\u001b[01m\u001b[Kconst\u001b[m\u001b[K' qualifier from pointer target type [enabled by default]\n",
      "             if(NULL == (fb_info->mem_type = H5T_copy(dset_type, H5T_COPY_REOPEN)))\n",
      "\u001b[01;32m\u001b[K             ^\u001b[m\u001b[K\n",
      "In file included from \u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Oprivate.h:41:0\u001b[m\u001b[K,\n",
      "                 from \u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Dprivate.h:27\u001b[m\u001b[K,\n",
      "                 from \u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Dpkg.h:32\u001b[m\u001b[K,\n",
      "                 from \u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Dfill.c:37\u001b[m\u001b[K:\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Tprivate.h:109:15:\u001b[m\u001b[K \u001b[01;36m\u001b[Knote: \u001b[m\u001b[Kexpected '\u001b[01m\u001b[Kstruct H5T_t *\u001b[m\u001b[K' but argument is of type '\u001b[01m\u001b[Kconst struct H5T_t *\u001b[m\u001b[K'\n",
      " H5_DLL H5T_t *H5T_copy(H5T_t *old_dt, H5T_copy_t method);\n",
      "\u001b[01;32m\u001b[K               ^\u001b[m\u001b[K\n",
      "  CC       H5Dint.lo\n",
      "  CC       H5Dio.lo\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Dint.c:\u001b[m\u001b[K In function '\u001b[01m\u001b[KH5D__init_type\u001b[m\u001b[K':\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Dint.c:638:9:\u001b[m\u001b[K \u001b[01;35m\u001b[Kwarning: \u001b[m\u001b[Kpassing argument 1 of '\u001b[01m\u001b[KH5T_copy\u001b[m\u001b[K' discards '\u001b[01m\u001b[Kconst\u001b[m\u001b[K' qualifier from pointer target type [enabled by default]\n",
      "         if((dset->shared->type = H5T_copy(type, H5T_COPY_ALL)) == NULL)\n",
      "\u001b[01;32m\u001b[K         ^\u001b[m\u001b[K\n",
      "In file included from \u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Oprivate.h:41:0\u001b[m\u001b[K,\n",
      "                 from \u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Dprivate.h:27\u001b[m\u001b[K,\n",
      "                 from \u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Dpkg.h:32\u001b[m\u001b[K,\n",
      "                 from \u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Dint.c:30\u001b[m\u001b[K:\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Tprivate.h:109:15:\u001b[m\u001b[K \u001b[01;36m\u001b[Knote: \u001b[m\u001b[Kexpected '\u001b[01m\u001b[Kstruct H5T_t *\u001b[m\u001b[K' but argument is of type '\u001b[01m\u001b[Kconst struct H5T_t *\u001b[m\u001b[K'\n",
      " H5_DLL H5T_t *H5T_copy(H5T_t *old_dt, H5T_copy_t method);\n",
      "\u001b[01;32m\u001b[K               ^\u001b[m\u001b[K\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Dio.c:\u001b[m\u001b[K In function '\u001b[01m\u001b[KH5D__read\u001b[m\u001b[K':\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Dio.c:424:5:\u001b[m\u001b[K \u001b[01;35m\u001b[Kwarning: \u001b[m\u001b[Kimplicit declaration of function '\u001b[01m\u001b[KH5T_patch_vlen_file\u001b[m\u001b[K' [-Wimplicit-function-declaration]\n",
      "     H5T_patch_vlen_file(dataset->shared->type, dataset->oloc.file);\n",
      "\u001b[01;32m\u001b[K     ^\u001b[m\u001b[K\n",
      "  CC       H5Dmpio.lo\n",
      "  CC       H5Dlayout.lo\n",
      "  CC       H5Dscatgath.lo\n",
      "  CC       H5Doh.lo\n",
      "  CC       H5Dtest.lo\n",
      "  CC       H5Dselect.lo\n",
      "  CC       H5Edeprec.lo\n",
      "  CC       H5E.lo\n",
      "  CC       H5Eint.lo\n",
      "  CC       H5Fint.lo\n",
      "  CC       H5F.lo\n",
      "  CC       H5Fcwfs.lo\n",
      "  CC       H5Faccum.lo\n",
      "  CC       H5Fefc.lo\n",
      "  CC       H5Fdbg.lo\n",
      "  CC       H5Fio.lo\n",
      "  CC       H5Ffake.lo\n",
      "  CC       H5Fmount.lo\n",
      "  CC       H5Fmpi.lo\n",
      "  CC       H5Fsfile.lo\n",
      "  CC       H5Fquery.lo\n",
      "  CC       H5Fsuper.lo\n",
      "  CC       H5Fsuper_cache.lo\n",
      "  CC       H5FD.lo\n",
      "  CC       H5Ftest.lo\n",
      "  CC       H5FDcore.lo\n",
      "  CC       H5FDdirect.lo\n",
      "  CC       H5FDfamily.lo\n",
      "  CC       H5FDint.lo\n",
      "  CC       H5FDmpi.lo\n",
      "  CC       H5FDlog.lo\n",
      "  CC       H5FDmulti.lo\n",
      "  CC       H5FDmpio.lo\n",
      "  CC       H5FDsec2.lo\n",
      "  CC       H5FDspace.lo\n",
      "  CC       H5FDstdio.lo\n",
      "  CC       H5FL.lo\n",
      "  CC       H5FS.lo\n",
      "  CC       H5FO.lo\n",
      "  CC       H5FSdbg.lo\n",
      "  CC       H5FScache.lo\n",
      "  CC       H5FSstat.lo\n",
      "  CC       H5FSsection.lo\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5FSsection.c:\u001b[m\u001b[K In function '\u001b[01m\u001b[KH5FS_sect_try_shrink_eoa\u001b[m\u001b[K':\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5FSsection.c:2338:5:\u001b[m\u001b[K \u001b[01;35m\u001b[Kwarning: \u001b[m\u001b[Kpassing argument 1 of '\u001b[01m\u001b[KH5FS_sinfo_lock\u001b[m\u001b[K' discards '\u001b[01m\u001b[Kconst\u001b[m\u001b[K' qualifier from pointer target type [enabled by default]\n",
      "     if(H5FS_sinfo_lock(f, dxpl_id, fspace, H5AC_WRITE) < 0)\n",
      "\u001b[01;32m\u001b[K     ^\u001b[m\u001b[K\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5FSsection.c:207:1:\u001b[m\u001b[K \u001b[01;36m\u001b[Knote: \u001b[m\u001b[Kexpected '\u001b[01m\u001b[Kstruct H5F_t *\u001b[m\u001b[K' but argument is of type '\u001b[01m\u001b[Kconst struct H5F_t *\u001b[m\u001b[K'\n",
      " H5FS_sinfo_lock(H5F_t *f, hid_t dxpl_id, H5FS_t *fspace, H5AC_protect_t accmode)\n",
      "\u001b[01;32m\u001b[K ^\u001b[m\u001b[K\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5FSsection.c:2338:5:\u001b[m\u001b[K \u001b[01;35m\u001b[Kwarning: \u001b[m\u001b[Kpassing argument 3 of '\u001b[01m\u001b[KH5FS_sinfo_lock\u001b[m\u001b[K' discards '\u001b[01m\u001b[Kconst\u001b[m\u001b[K' qualifier from pointer target type [enabled by default]\n",
      "     if(H5FS_sinfo_lock(f, dxpl_id, fspace, H5AC_WRITE) < 0)\n",
      "\u001b[01;32m\u001b[K     ^\u001b[m\u001b[K\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5FSsection.c:207:1:\u001b[m\u001b[K \u001b[01;36m\u001b[Knote: \u001b[m\u001b[Kexpected '\u001b[01m\u001b[Kstruct H5FS_t *\u001b[m\u001b[K' but argument is of type '\u001b[01m\u001b[Kconst struct H5FS_t *\u001b[m\u001b[K'\n",
      " H5FS_sinfo_lock(H5F_t *f, hid_t dxpl_id, H5FS_t *fspace, H5AC_protect_t accmode)\n",
      "\u001b[01;32m\u001b[K ^\u001b[m\u001b[K\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5FSsection.c:2362:7:\u001b[m\u001b[K \u001b[01;35m\u001b[Kwarning: \u001b[m\u001b[Kpassing argument 1 of '\u001b[01m\u001b[KH5FS_sect_remove_real\u001b[m\u001b[K' discards '\u001b[01m\u001b[Kconst\u001b[m\u001b[K' qualifier from pointer target type [enabled by default]\n",
      "       if(H5FS_sect_remove_real(fspace, tmp_sect) < 0)\n",
      "\u001b[01;32m\u001b[K       ^\u001b[m\u001b[K\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5FSsection.c:859:1:\u001b[m\u001b[K \u001b[01;36m\u001b[Knote: \u001b[m\u001b[Kexpected '\u001b[01m\u001b[Kstruct H5FS_t *\u001b[m\u001b[K' but argument is of type '\u001b[01m\u001b[Kconst struct H5FS_t *\u001b[m\u001b[K'\n",
      " H5FS_sect_remove_real(H5FS_t *fspace, H5FS_section_info_t *sect)\n",
      "\u001b[01;32m\u001b[K ^\u001b[m\u001b[K\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5FSsection.c:2376:5:\u001b[m\u001b[K \u001b[01;35m\u001b[Kwarning: \u001b[m\u001b[Kpassing argument 1 of '\u001b[01m\u001b[KH5FS_sinfo_unlock\u001b[m\u001b[K' discards '\u001b[01m\u001b[Kconst\u001b[m\u001b[K' qualifier from pointer target type [enabled by default]\n",
      "     if(sinfo_valid && H5FS_sinfo_unlock(f, dxpl_id, fspace, section_removed) < 0)\n",
      "\u001b[01;32m\u001b[K     ^\u001b[m\u001b[K\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5FSsection.c:313:1:\u001b[m\u001b[K \u001b[01;36m\u001b[Knote: \u001b[m\u001b[Kexpected '\u001b[01m\u001b[Kstruct H5F_t *\u001b[m\u001b[K' but argument is of type '\u001b[01m\u001b[Kconst struct H5F_t *\u001b[m\u001b[K'\n",
      " H5FS_sinfo_unlock(H5F_t *f, hid_t dxpl_id, H5FS_t *fspace, hbool_t modified)\n",
      "\u001b[01;32m\u001b[K ^\u001b[m\u001b[K\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5FSsection.c:2376:5:\u001b[m\u001b[K \u001b[01;35m\u001b[Kwarning: \u001b[m\u001b[Kpassing argument 3 of '\u001b[01m\u001b[KH5FS_sinfo_unlock\u001b[m\u001b[K' discards '\u001b[01m\u001b[Kconst\u001b[m\u001b[K' qualifier from pointer target type [enabled by default]\n",
      "     if(sinfo_valid && H5FS_sinfo_unlock(f, dxpl_id, fspace, section_removed) < 0)\n",
      "\u001b[01;32m\u001b[K     ^\u001b[m\u001b[K\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5FSsection.c:313:1:\u001b[m\u001b[K \u001b[01;36m\u001b[Knote: \u001b[m\u001b[Kexpected '\u001b[01m\u001b[Kstruct H5FS_t *\u001b[m\u001b[K' but argument is of type '\u001b[01m\u001b[Kconst struct H5FS_t *\u001b[m\u001b[K'\n",
      " H5FS_sinfo_unlock(H5F_t *f, hid_t dxpl_id, H5FS_t *fspace, hbool_t modified)\n",
      "\u001b[01;32m\u001b[K ^\u001b[m\u001b[K\n",
      "  CC       H5FStest.lo\n",
      "  CC       H5G.lo\n",
      "  CC       H5Gbtree2.lo\n",
      "  CC       H5Gcache.lo\n",
      "  CC       H5Gcompact.lo\n",
      "  CC       H5Gdense.lo\n",
      "  CC       H5Gdeprec.lo\n",
      "  CC       H5Gint.lo\n",
      "  CC       H5Gent.lo\n",
      "  CC       H5Glink.lo\n",
      "  CC       H5Gloc.lo\n",
      "  CC       H5Gnode.lo\n",
      "  CC       H5Gname.lo\n",
      "  CC       H5Goh.lo\n",
      "  CC       H5Gobj.lo\n",
      "  CC       H5Groot.lo\n",
      "  CC       H5Gstab.lo\n",
      "  CC       H5Gtraverse.lo\n",
      "  CC       H5Gtest.lo\n",
      "  CC       H5HF.lo\n",
      "  CC       H5HFbtree2.lo\n",
      "  CC       H5HFcache.lo\n",
      "  CC       H5HFdbg.lo\n",
      "  CC       H5HFdblock.lo\n",
      "  CC       H5HFdtable.lo\n",
      "  CC       H5HFhdr.lo\n",
      "  CC       H5HFhuge.lo\n",
      "  CC       H5HFiblock.lo\n",
      "  CC       H5HFiter.lo\n",
      "  CC       H5HFsection.lo\n",
      "  CC       H5HFman.lo\n",
      "  CC       H5HFspace.lo\n",
      "  CC       H5HFstat.lo\n",
      "  CC       H5HFtest.lo\n",
      "  CC       H5HFtiny.lo\n",
      "  CC       H5HGcache.lo\n",
      "  CC       H5HG.lo\n",
      "  CC       H5HGdbg.lo\n",
      "  CC       H5HGquery.lo\n",
      "  CC       H5HL.lo\n",
      "  CC       H5HLcache.lo\n",
      "  CC       H5HLint.lo\n",
      "  CC       H5HLdbg.lo\n",
      "  CC       H5I.lo\n",
      "  CC       H5HP.lo\n",
      "  CC       H5Itest.lo\n",
      "  CC       H5L.lo\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5L.c:\u001b[m\u001b[K In function '\u001b[01m\u001b[KH5L_move_cb\u001b[m\u001b[K':\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5L.c:2580:13:\u001b[m\u001b[K \u001b[01;35m\u001b[Kwarning: \u001b[m\u001b[Kpassing argument 1 of '\u001b[01m\u001b[KH5RS_wrap\u001b[m\u001b[K' discards '\u001b[01m\u001b[Kconst\u001b[m\u001b[K' qualifier from pointer target type [enabled by default]\n",
      "             dst_name_r = H5RS_wrap(udata->dst_name);\n",
      "\u001b[01;32m\u001b[K             ^\u001b[m\u001b[K\n",
      "In file included from \u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Gprivate.h:37:0\u001b[m\u001b[K,\n",
      "                 from \u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Tprivate.h:30\u001b[m\u001b[K,\n",
      "                 from \u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Oprivate.h:41\u001b[m\u001b[K,\n",
      "                 from \u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Dprivate.h:27\u001b[m\u001b[K,\n",
      "                 from \u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5L.c:30\u001b[m\u001b[K:\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5RSprivate.h:49:20:\u001b[m\u001b[K \u001b[01;36m\u001b[Knote: \u001b[m\u001b[Kexpected '\u001b[01m\u001b[Kchar *\u001b[m\u001b[K' but argument is of type '\u001b[01m\u001b[Kconst char *\u001b[m\u001b[K'\n",
      " H5_DLL H5RS_str_t *H5RS_wrap(char *s);\n",
      "\u001b[01;32m\u001b[K                    ^\u001b[m\u001b[K\n",
      "  CC       H5Lexternal.lo\n",
      "  CC       H5MF.lo\n",
      "  CC       H5make_libsettings.o\n",
      "  CC       H5MFaggr.lo\n",
      "  CC       H5MFsection.lo\n",
      "  CC       H5MFdbg.lo\n",
      "  CC       H5MM.lo\n",
      "  CC       H5MP.lo\n",
      "  CC       H5MPtest.lo\n",
      "  CC       H5O.lo\n",
      "  CC       H5Oainfo.lo\n",
      "  CC       H5Oalloc.lo\n",
      "  CC       H5Oattr.lo\n",
      "  CC       H5Obogus.lo\n",
      "  CC       H5Oattribute.lo\n",
      "  CC       H5Obtreek.lo\n",
      "  CC       H5Ocache.lo\n",
      "  CC       H5Ochunk.lo\n",
      "  CC       H5Ocont.lo\n",
      "  CC       H5Odbg.lo\n",
      "  CC       H5Ocopy.lo\n",
      "  CC       H5Odtype.lo\n",
      "  CC       H5Odrvinfo.lo\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Odtype.c:\u001b[m\u001b[K In function '\u001b[01m\u001b[KH5O_dtype_copy\u001b[m\u001b[K':\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Odtype.c:1188:5:\u001b[m\u001b[K \u001b[01;35m\u001b[Kwarning: \u001b[m\u001b[Kpassing argument 1 of '\u001b[01m\u001b[KH5T_copy\u001b[m\u001b[K' discards '\u001b[01m\u001b[Kconst\u001b[m\u001b[K' qualifier from pointer target type [enabled by default]\n",
      "     if(NULL == (dst = H5T_copy(src, H5T_COPY_ALL)))\n",
      "\u001b[01;32m\u001b[K     ^\u001b[m\u001b[K\n",
      "In file included from \u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Oprivate.h:41:0\u001b[m\u001b[K,\n",
      "                 from \u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Dprivate.h:27\u001b[m\u001b[K,\n",
      "                 from \u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Odtype.c:20\u001b[m\u001b[K:\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Tprivate.h:109:15:\u001b[m\u001b[K \u001b[01;36m\u001b[Knote: \u001b[m\u001b[Kexpected '\u001b[01m\u001b[Kstruct H5T_t *\u001b[m\u001b[K' but argument is of type '\u001b[01m\u001b[Kconst struct H5T_t *\u001b[m\u001b[K'\n",
      " H5_DLL H5T_t *H5T_copy(H5T_t *old_dt, H5T_copy_t method);\n",
      "\u001b[01;32m\u001b[K               ^\u001b[m\u001b[K\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Odtype.c:\u001b[m\u001b[K In function '\u001b[01m\u001b[KH5O_dtype_pre_copy_file\u001b[m\u001b[K':\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Odtype.c:1533:9:\u001b[m\u001b[K \u001b[01;35m\u001b[Kwarning: \u001b[m\u001b[Kpassing argument 1 of '\u001b[01m\u001b[KH5T_copy\u001b[m\u001b[K' discards '\u001b[01m\u001b[Kconst\u001b[m\u001b[K' qualifier from pointer target type [enabled by default]\n",
      "         if(NULL == (udata->src_dtype = H5T_copy(dt_src, H5T_COPY_TRANSIENT)))\n",
      "\u001b[01;32m\u001b[K         ^\u001b[m\u001b[K\n",
      "In file included from \u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Oprivate.h:41:0\u001b[m\u001b[K,\n",
      "                 from \u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Dprivate.h:27\u001b[m\u001b[K,\n",
      "                 from \u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Odtype.c:20\u001b[m\u001b[K:\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Tprivate.h:109:15:\u001b[m\u001b[K \u001b[01;36m\u001b[Knote: \u001b[m\u001b[Kexpected '\u001b[01m\u001b[Kstruct H5T_t *\u001b[m\u001b[K' but argument is of type '\u001b[01m\u001b[Kconst struct H5T_t *\u001b[m\u001b[K'\n",
      " H5_DLL H5T_t *H5T_copy(H5T_t *old_dt, H5T_copy_t method);\n",
      "\u001b[01;32m\u001b[K               ^\u001b[m\u001b[K\n",
      "  CC       H5Oefl.lo\n",
      "  CC       H5Ofill.lo\n",
      "  CC       H5Oginfo.lo\n",
      "  CC       H5Olayout.lo\n",
      "  CC       H5Olinfo.lo\n",
      "  CC       H5Olink.lo\n",
      "  CC       H5Omessage.lo\n",
      "  CC       H5Omtime.lo\n",
      "  CC       H5Oname.lo\n",
      "  CC       H5Onull.lo\n",
      "  CC       H5Orefcount.lo\n",
      "  CC       H5Opline.lo\n",
      "  CC       H5Oshared.lo\n",
      "  CC       H5Osdspace.lo\n",
      "  CC       H5Oshmesg.lo\n",
      "  CC       H5Ostab.lo\n",
      "  CC       H5Ounknown.lo\n",
      "  CC       H5Otest.lo\n",
      "  CC       H5P.lo\n",
      "  CC       H5Pacpl.lo\n",
      "  CC       H5Pdcpl.lo\n",
      "  CC       H5Pdapl.lo\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Pdcpl.c:\u001b[m\u001b[K In function '\u001b[01m\u001b[KH5P_get_fill_value\u001b[m\u001b[K':\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Pdcpl.c:1565:5:\u001b[m\u001b[K \u001b[01;35m\u001b[Kwarning: \u001b[m\u001b[Kpassing argument 1 of '\u001b[01m\u001b[KH5T_copy\u001b[m\u001b[K' discards '\u001b[01m\u001b[Kconst\u001b[m\u001b[K' qualifier from pointer target type [enabled by default]\n",
      "     if((dst_id = H5I_register(H5I_DATATYPE, H5T_copy(type, H5T_COPY_TRANSIENT), FALSE)) < 0)\n",
      "\u001b[01;32m\u001b[K     ^\u001b[m\u001b[K\n",
      "In file included from \u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Oprivate.h:41:0\u001b[m\u001b[K,\n",
      "                 from \u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Dprivate.h:27\u001b[m\u001b[K,\n",
      "                 from \u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Pdcpl.c:39\u001b[m\u001b[K:\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Tprivate.h:109:15:\u001b[m\u001b[K \u001b[01;36m\u001b[Knote: \u001b[m\u001b[Kexpected '\u001b[01m\u001b[Kstruct H5T_t *\u001b[m\u001b[K' but argument is of type '\u001b[01m\u001b[Kconst struct H5T_t *\u001b[m\u001b[K'\n",
      " H5_DLL H5T_t *H5T_copy(H5T_t *old_dt, H5T_copy_t method);\n",
      "\u001b[01;32m\u001b[K               ^\u001b[m\u001b[K\n",
      "  CC       H5Pdeprec.lo\n",
      "  CC       H5Pdxpl.lo\n",
      "  CC       H5Pfapl.lo\n",
      "  CC       H5Pfcpl.lo\n",
      "  CC       H5Pgcpl.lo\n",
      "  CC       H5Pfmpl.lo\n",
      "  CC       H5Pint.lo\n",
      "  CC       H5Plapl.lo\n",
      "  CC       H5Plcpl.lo\n",
      "  CC       H5Pocpl.lo\n",
      "  CC       H5Pocpypl.lo\n",
      "  CC       H5Pstrcpl.lo\n",
      "  CC       H5Ptest.lo\n",
      "  CC       H5PL.lo\n",
      "  CC       H5R.lo\n",
      "  CC       H5Rdeprec.lo\n",
      "  CC       H5RC.lo\n",
      "  CC       H5S.lo\n",
      "  CC       H5RS.lo\n",
      "  CC       H5Sall.lo\n",
      "  CC       H5Sdbg.lo\n",
      "  CC       H5Smpio.lo\n",
      "  CC       H5Shyper.lo\n",
      "  CC       H5Snone.lo\n",
      "  CC       H5Spoint.lo\n",
      "  CC       H5Sselect.lo\n",
      "  CC       H5Stest.lo\n",
      "  CC       H5SL.lo\n",
      "  CC       H5SM.lo\n",
      "  CC       H5SMbtree2.lo\n",
      "  CC       H5SMcache.lo\n",
      "  CC       H5SMmessage.lo\n",
      "  CC       H5SMtest.lo\n",
      "  CC       H5ST.lo\n",
      "  CC       H5T.lo\n",
      "  CC       H5Tarray.lo\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5T.c:\u001b[m\u001b[K In function '\u001b[01m\u001b[KH5T_path_find\u001b[m\u001b[K':\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5T.c:4485:2:\u001b[m\u001b[K \u001b[01;35m\u001b[Kwarning: \u001b[m\u001b[Kpassing argument 1 of '\u001b[01m\u001b[KH5T_copy\u001b[m\u001b[K' discards '\u001b[01m\u001b[Kconst\u001b[m\u001b[K' qualifier from pointer target type [enabled by default]\n",
      "  if(NULL == (path->src = H5T_copy(src, H5T_COPY_ALL)))\n",
      "\u001b[01;32m\u001b[K  ^\u001b[m\u001b[K\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5T.c:3115:1:\u001b[m\u001b[K \u001b[01;36m\u001b[Knote: \u001b[m\u001b[Kexpected '\u001b[01m\u001b[Kstruct H5T_t *\u001b[m\u001b[K' but argument is of type '\u001b[01m\u001b[Kconst struct H5T_t *\u001b[m\u001b[K'\n",
      " H5T_copy(H5T_t *old_dt, H5T_copy_t method)\n",
      "\u001b[01;32m\u001b[K ^\u001b[m\u001b[K\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5T.c:4487:9:\u001b[m\u001b[K \u001b[01;35m\u001b[Kwarning: \u001b[m\u001b[Kpassing argument 1 of '\u001b[01m\u001b[KH5T_copy\u001b[m\u001b[K' discards '\u001b[01m\u001b[Kconst\u001b[m\u001b[K' qualifier from pointer target type [enabled by default]\n",
      "         if(NULL == (path->dst = H5T_copy(dst, H5T_COPY_ALL)))\n",
      "\u001b[01;32m\u001b[K         ^\u001b[m\u001b[K\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5T.c:3115:1:\u001b[m\u001b[K \u001b[01;36m\u001b[Knote: \u001b[m\u001b[Kexpected '\u001b[01m\u001b[Kstruct H5T_t *\u001b[m\u001b[K' but argument is of type '\u001b[01m\u001b[Kconst struct H5T_t *\u001b[m\u001b[K'\n",
      " H5T_copy(H5T_t *old_dt, H5T_copy_t method)\n",
      "\u001b[01;32m\u001b[K ^\u001b[m\u001b[K\n",
      "  CC       H5Tbit.lo\n",
      "  CC       H5Tcompound.lo\n",
      "  CC       H5Tcommit.lo\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Tcompound.c:\u001b[m\u001b[K In function '\u001b[01m\u001b[KH5T__insert\u001b[m\u001b[K':\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Tcompound.c:484:5:\u001b[m\u001b[K \u001b[01;35m\u001b[Kwarning: \u001b[m\u001b[Kpassing argument 1 of '\u001b[01m\u001b[KH5T_copy\u001b[m\u001b[K' discards '\u001b[01m\u001b[Kconst\u001b[m\u001b[K' qualifier from pointer target type [enabled by default]\n",
      "     parent->shared->u.compnd.memb[idx].type = H5T_copy(member, H5T_COPY_ALL);\n",
      "\u001b[01;32m\u001b[K     ^\u001b[m\u001b[K\n",
      "In file included from \u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Tpkg.h:39:0\u001b[m\u001b[K,\n",
      "                 from \u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Tcompound.c:38\u001b[m\u001b[K:\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Tprivate.h:109:15:\u001b[m\u001b[K \u001b[01;36m\u001b[Knote: \u001b[m\u001b[Kexpected '\u001b[01m\u001b[Kstruct H5T_t *\u001b[m\u001b[K' but argument is of type '\u001b[01m\u001b[Kconst struct H5T_t *\u001b[m\u001b[K'\n",
      " H5_DLL H5T_t *H5T_copy(H5T_t *old_dt, H5T_copy_t method);\n",
      "\u001b[01;32m\u001b[K               ^\u001b[m\u001b[K\n",
      "  CC       H5Tconv.lo\n",
      "  CC       H5Tcset.lo\n",
      "  CC       H5Tdbg.lo\n",
      "  CC       H5Tdeprec.lo\n",
      "  CC       H5Tenum.lo\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Tenum.c:\u001b[m\u001b[K In function '\u001b[01m\u001b[KH5T__enum_create\u001b[m\u001b[K':\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Tenum.c:136:5:\u001b[m\u001b[K \u001b[01;35m\u001b[Kwarning: \u001b[m\u001b[Kpassing argument 1 of '\u001b[01m\u001b[KH5T_copy\u001b[m\u001b[K' discards '\u001b[01m\u001b[Kconst\u001b[m\u001b[K' qualifier from pointer target type [enabled by default]\n",
      "     ret_value->shared->parent = H5T_copy(parent, H5T_COPY_ALL);\n",
      "\u001b[01;32m\u001b[K     ^\u001b[m\u001b[K\n",
      "In file included from \u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Tpkg.h:39:0\u001b[m\u001b[K,\n",
      "                 from \u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Tenum.c:31\u001b[m\u001b[K:\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Tprivate.h:109:15:\u001b[m\u001b[K \u001b[01;36m\u001b[Knote: \u001b[m\u001b[Kexpected '\u001b[01m\u001b[Kstruct H5T_t *\u001b[m\u001b[K' but argument is of type '\u001b[01m\u001b[Kconst struct H5T_t *\u001b[m\u001b[K'\n",
      " H5_DLL H5T_t *H5T_copy(H5T_t *old_dt, H5T_copy_t method);\n",
      "\u001b[01;32m\u001b[K               ^\u001b[m\u001b[K\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Tenum.c:\u001b[m\u001b[K In function '\u001b[01m\u001b[KH5T_enum_nameof\u001b[m\u001b[K':\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Tenum.c:437:5:\u001b[m\u001b[K \u001b[01;35m\u001b[Kwarning: \u001b[m\u001b[Kpassing argument 1 of '\u001b[01m\u001b[KH5T_copy\u001b[m\u001b[K' discards '\u001b[01m\u001b[Kconst\u001b[m\u001b[K' qualifier from pointer target type [enabled by default]\n",
      "     if(NULL == (copied_dt = H5T_copy(dt, H5T_COPY_ALL)))\n",
      "\u001b[01;32m\u001b[K     ^\u001b[m\u001b[K\n",
      "In file included from \u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Tpkg.h:39:0\u001b[m\u001b[K,\n",
      "                 from \u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Tenum.c:31\u001b[m\u001b[K:\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Tprivate.h:109:15:\u001b[m\u001b[K \u001b[01;36m\u001b[Knote: \u001b[m\u001b[Kexpected '\u001b[01m\u001b[Kstruct H5T_t *\u001b[m\u001b[K' but argument is of type '\u001b[01m\u001b[Kconst struct H5T_t *\u001b[m\u001b[K'\n",
      " H5_DLL H5T_t *H5T_copy(H5T_t *old_dt, H5T_copy_t method);\n",
      "\u001b[01;32m\u001b[K               ^\u001b[m\u001b[K\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Tenum.c:\u001b[m\u001b[K In function '\u001b[01m\u001b[KH5T_enum_valueof\u001b[m\u001b[K':\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Tenum.c:576:5:\u001b[m\u001b[K \u001b[01;35m\u001b[Kwarning: \u001b[m\u001b[Kpassing argument 1 of '\u001b[01m\u001b[KH5T_copy\u001b[m\u001b[K' discards '\u001b[01m\u001b[Kconst\u001b[m\u001b[K' qualifier from pointer target type [enabled by default]\n",
      "     if (NULL==(copied_dt=H5T_copy(dt, H5T_COPY_ALL)))\n",
      "\u001b[01;32m\u001b[K     ^\u001b[m\u001b[K\n",
      "In file included from \u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Tpkg.h:39:0\u001b[m\u001b[K,\n",
      "                 from \u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Tenum.c:31\u001b[m\u001b[K:\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Tprivate.h:109:15:\u001b[m\u001b[K \u001b[01;36m\u001b[Knote: \u001b[m\u001b[Kexpected '\u001b[01m\u001b[Kstruct H5T_t *\u001b[m\u001b[K' but argument is of type '\u001b[01m\u001b[Kconst struct H5T_t *\u001b[m\u001b[K'\n",
      " H5_DLL H5T_t *H5T_copy(H5T_t *old_dt, H5T_copy_t method);\n",
      "\u001b[01;32m\u001b[K               ^\u001b[m\u001b[K\n",
      "  CC       H5Tfields.lo\n",
      "  CC       H5Tfixed.lo\n",
      "  CC       H5Tfloat.lo\n",
      "  CC       H5detect.o\n",
      "  CC       H5Tnative.lo\n",
      "  CC       H5Toffset.lo\n",
      "  CC       H5Toh.lo\n",
      "  CC       H5Topaque.lo\n",
      "  CC       H5Torder.lo\n",
      "  CC       H5Tpad.lo\n",
      "  CC       H5Tprecis.lo\n",
      "  CC       H5Tstrpad.lo\n",
      "  CC       H5Tvisit.lo\n",
      "  CC       H5Tvlen.lo\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Tvlen.c:\u001b[m\u001b[K In function '\u001b[01m\u001b[KH5T__vlen_create\u001b[m\u001b[K':\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Tvlen.c:168:5:\u001b[m\u001b[K \u001b[01;35m\u001b[Kwarning: \u001b[m\u001b[Kpassing argument 1 of '\u001b[01m\u001b[KH5T_copy\u001b[m\u001b[K' discards '\u001b[01m\u001b[Kconst\u001b[m\u001b[K' qualifier from pointer target type [enabled by default]\n",
      "     if(NULL == (dt->shared->parent = H5T_copy(base, H5T_COPY_ALL)))\n",
      "\u001b[01;32m\u001b[K     ^\u001b[m\u001b[K\n",
      "In file included from \u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Oprivate.h:41:0\u001b[m\u001b[K,\n",
      "                 from \u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Dprivate.h:27\u001b[m\u001b[K,\n",
      "                 from \u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Tvlen.c:28\u001b[m\u001b[K:\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Tprivate.h:109:15:\u001b[m\u001b[K \u001b[01;36m\u001b[Knote: \u001b[m\u001b[Kexpected '\u001b[01m\u001b[Kstruct H5T_t *\u001b[m\u001b[K' but argument is of type '\u001b[01m\u001b[Kconst struct H5T_t *\u001b[m\u001b[K'\n",
      " H5_DLL H5T_t *H5T_copy(H5T_t *old_dt, H5T_copy_t method);\n",
      "\u001b[01;32m\u001b[K               ^\u001b[m\u001b[K\n",
      "  CC       H5TS.lo\n",
      "  CC       H5VM.lo\n",
      "  CC       H5WB.lo\n",
      "  CC       H5Zdeflate.lo\n",
      "  CC       H5Z.lo\n",
      "  CC       H5Zfletcher32.lo\n",
      "  CC       H5Znbit.lo\n",
      "  CC       H5Zshuffle.lo\n",
      "  CC       H5Zszip.lo\n",
      "  CC       H5Zscaleoffset.lo\n",
      "  CC       H5Ztrans.lo\n",
      "  CCLD     H5detect\n",
      "  CCLD     H5make_libsettings\n",
      "LD_LIBRARY_PATH=\"$LD_LIBRARY_PATH`echo  |                  \\\n",
      "\tsed -e 's/-L/:/g' -e 's/ //g'`\"                               \\\n",
      " ./H5make_libsettings > H5lib_settings.c  ||                               \\\n",
      "    (test $HDF5_Make_Ignore && echo \"*** Error ignored\") ||          \\\n",
      "    (rm -f H5lib_settings.c ; exit 1)\n",
      "LD_LIBRARY_PATH=\"$LD_LIBRARY_PATH`echo  |                  \\\n",
      "\tsed -e 's/-L/:/g' -e 's/ //g'`\"                               \\\n",
      " ./H5detect > H5Tinit.c  ||                               \\\n",
      "    (test $HDF5_Make_Ignore && echo \"*** Error ignored\") ||          \\\n",
      "    (rm -f H5Tinit.c ; exit 1)\n",
      "  CC       H5lib_settings.lo\n",
      "  CC       H5Tinit.lo\n",
      "  CCLD     libhdf5.la\n",
      "make[2]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/src'\n",
      "make[1]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/src'\n",
      "Making all in test\n",
      "make[1]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/test'\n",
      "  CC       dynlib1.lo\n",
      "  CC       dynlib2.lo\n",
      "  CC       dynlib3.lo\n",
      "  CC       h5test.lo\n",
      "  CC       cache_common.lo\n",
      "  CC       testframe.lo\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/test/testframe.c:\u001b[m\u001b[K In function '\u001b[01m\u001b[KPrintErrorStackOn\u001b[m\u001b[K':\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/test/testframe.c:618:5:\u001b[m\u001b[K \u001b[01;35m\u001b[Kwarning: \u001b[m\u001b[Kpassing argument 2 of '\u001b[01m\u001b[KH5Eset_auto2\u001b[m\u001b[K' from incompatible pointer type [enabled by default]\n",
      "     H5Eset_auto2(H5E_DEFAULT, PrintErrorStackFunc, PrintErrorStackData);\n",
      "\u001b[01;32m\u001b[K     ^\u001b[m\u001b[K\n",
      "In file included from \u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Eprivate.h:22:0\u001b[m\u001b[K,\n",
      "                 from \u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/test/testhdf5.h:28\u001b[m\u001b[K,\n",
      "                 from \u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/test/testframe.c:24\u001b[m\u001b[K:\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Epublic.h:174:15:\u001b[m\u001b[K \u001b[01;36m\u001b[Knote: \u001b[m\u001b[Kexpected '\u001b[01m\u001b[KH5E_auto2_t\u001b[m\u001b[K' but argument is of type '\u001b[01m\u001b[Kherr_t (**)(hid_t,  void *)\u001b[m\u001b[K'\n",
      " H5_DLL herr_t H5Eset_auto2(hid_t estack_id, H5E_auto2_t func, void *client_data);\n",
      "\u001b[01;32m\u001b[K               ^\u001b[m\u001b[K\n",
      "  CC       testhdf5.o\n",
      "  CC       tarray.o\n",
      "  CC       tattr.o\n",
      "  CC       tchecksum.o\n",
      "  CC       tconfig.o\n",
      "  CC       tfile.o\n",
      "  CC       tgenprop.o\n",
      "  CC       th5o.o\n",
      "  CC       th5s.o\n",
      "  CC       tcoords.o\n",
      "  CC       theap.o\n",
      "  CC       tid.o\n",
      "  CC       titerate.o\n",
      "  CC       tmeta.o\n",
      "  CC       tmisc.o\n",
      "  CC       trefer.o\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/test/tmisc.c:\u001b[m\u001b[K In function '\u001b[01m\u001b[Ktest_misc16\u001b[m\u001b[K':\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/test/tmisc.c:2725:25:\u001b[m\u001b[K \u001b[01;35m\u001b[Kwarning: \u001b[m\u001b[Kinitialization makes integer from pointer without a cast [enabled by default]\n",
      "                         {\"1234567\", \"1234567\\0\", \"12345678\", {NULL}};\n",
      "\u001b[01;32m\u001b[K                         ^\u001b[m\u001b[K\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/test/tmisc.c:2725:25:\u001b[m\u001b[K \u001b[01;35m\u001b[Kwarning: \u001b[m\u001b[K(near initialization for '\u001b[01m\u001b[Kwdata[3][0]\u001b[m\u001b[K') [enabled by default]\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/test/tmisc.c:\u001b[m\u001b[K In function '\u001b[01m\u001b[Ktest_misc17\u001b[m\u001b[K':\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/test/tmisc.c:2804:25:\u001b[m\u001b[K \u001b[01;35m\u001b[Kwarning: \u001b[m\u001b[Kinitialization makes integer from pointer without a cast [enabled by default]\n",
      "                         {\"1234567\", \"1234567\\0\", \"12345678\", {NULL}};\n",
      "\u001b[01;32m\u001b[K                         ^\u001b[m\u001b[K\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/test/tmisc.c:2804:25:\u001b[m\u001b[K \u001b[01;35m\u001b[Kwarning: \u001b[m\u001b[K(near initialization for '\u001b[01m\u001b[Kwdata[3][0]\u001b[m\u001b[K') [enabled by default]\n",
      "  CC       trefstr.o\n",
      "  CC       tskiplist.o\n",
      "  CC       tselect.o\n",
      "  CC       tsohm.o\n",
      "  CC       ttime.o\n",
      "  CC       ttst.o\n",
      "  CC       tunicode.o\n",
      "  CC       tvltypes.o\n",
      "  CC       tvlstr.o\n",
      "  CC       lheap.o\n",
      "  CC       stab.o\n",
      "  CC       ohdr.o\n",
      "  CC       gheap.o\n",
      "  CC       cache.o\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/test/cache.c:\u001b[m\u001b[K In function '\u001b[01m\u001b[Kcheck_auto_cache_resize_input_errs\u001b[m\u001b[K':\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/test/cache.c:25757:9:\u001b[m\u001b[K \u001b[01;35m\u001b[Kwarning: \u001b[m\u001b[Kimplicit declaration of function '\u001b[01m\u001b[Kresize_configs_are_equal\u001b[m\u001b[K' [-Wimplicit-function-declaration]\n",
      "         } else if ( ! resize_configs_are_equal(&test_auto_size_ctl, \\\n",
      "\u001b[01;32m\u001b[K         ^\u001b[m\u001b[K\n",
      "  CC       cache_api.o\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/test/cache_api.c:\u001b[m\u001b[K In function '\u001b[01m\u001b[Kcheck_fapl_mdc_api_calls\u001b[m\u001b[K':\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/test/cache_api.c:265:2:\u001b[m\u001b[K \u001b[01;35m\u001b[Kwarning: \u001b[m\u001b[Kimplicit declaration of function '\u001b[01m\u001b[Kresize_configs_are_equal\u001b[m\u001b[K' [-Wimplicit-function-declaration]\n",
      "  if ( ! resize_configs_are_equal(&default_auto_size_ctl, \\\n",
      "\u001b[01;32m\u001b[K  ^\u001b[m\u001b[K\n",
      "  CC       pool.o\n",
      "  CC       accum.o\n",
      "  CC       hyperslab.o\n",
      "  CC       istore.o\n",
      "  CC       bittests.o\n",
      "  CC       dtypes.o\n",
      "  CC       dt_arith.o\n",
      "  CC       cmpd_dset.o\n",
      "  CC       dsets.o\n",
      "  CC       filter_fail.o\n",
      "  CC       extend.o\n",
      "  CC       external.o\n",
      "  CC       efc.o\n",
      "  CC       objcopy.o\n",
      "  CC       links.o\n",
      "  CC       unlink.o\n",
      "  CC       big.o\n",
      "  CC       mtime.o\n",
      "  CC       mount.o\n",
      "  CC       fillval.o\n",
      "  CC       flush1.o\n",
      "  CC       app_ref.o\n",
      "  CC       flush2.o\n",
      "  CC       set_extent.o\n",
      "  CC       enum.o\n",
      "  CC       ttsafe.o\n",
      "  CC       ttsafe_dcreate.o\n",
      "  CC       ttsafe_error.o\n",
      "  CC       ttsafe_cancel.o\n",
      "  CC       getname.o\n",
      "  CC       ttsafe_acreate.o\n",
      "  CC       vfd.o\n",
      "  CC       ntypes.o\n",
      "  CC       dangle.o\n",
      "  CC       dtransform.o\n",
      "  CC       reserved.o\n",
      "  CC       freespace.o\n",
      "  CC       cross_read.o\n",
      "  CC       mf.o\n",
      "  CC       btree2.o\n",
      "  CC       fheap.o\n",
      "  CC       file_image.o\n",
      "  CC       unregister.o\n",
      "  CC       error_test.o\n",
      "  CC       tcheck_version.o\n",
      "  CC       err_compat.o\n",
      "  CC       links_env.o\n",
      "  CC       testmeta.o\n",
      "  CC       plugin.o\n",
      "  CCLD     libdynlib1.la\n",
      "  CCLD     libdynlib2.la\n",
      "  CCLD     libdynlib3.la\n",
      "  CCLD     libh5test.la\n",
      "  CCLD     lheap\n",
      "  CCLD     testhdf5\n",
      "  CCLD     ohdr\n",
      "  CCLD     stab\n",
      "  CCLD     cache\n",
      "  CCLD     gheap\n",
      "  CCLD     cache_api\n",
      "  CCLD     pool\n",
      "  CCLD     accum\n",
      "  CCLD     hyperslab\n",
      "  CCLD     istore\n",
      "  CCLD     bittests\n",
      "  CCLD     dt_arith\n",
      "  CCLD     dtypes\n",
      "  CCLD     cmpd_dset\n",
      "  CCLD     dsets\n",
      "  CCLD     filter_fail\n",
      "  CCLD     extend\n",
      "  CCLD     efc\n",
      "  CCLD     external\n",
      "  CCLD     links\n",
      "  CCLD     objcopy\n",
      "  CCLD     big\n",
      "  CCLD     unlink\n",
      "  CCLD     fillval\n",
      "  CCLD     mtime\n",
      "  CCLD     flush1\n",
      "  CCLD     mount\n",
      "  CCLD     flush2\n",
      "  CCLD     app_ref\n",
      "  CCLD     set_extent\n",
      "  CCLD     enum\n",
      "  CCLD     ttsafe\n",
      "  CCLD     getname\n",
      "  CCLD     ntypes\n",
      "  CCLD     vfd\n",
      "  CCLD     dangle\n",
      "  CCLD     dtransform\n",
      "  CCLD     cross_read\n",
      "  CCLD     reserved\n",
      "  CCLD     freespace\n",
      "  CCLD     mf\n",
      "  CCLD     fheap\n",
      "  CCLD     btree2\n",
      "  CCLD     file_image\n",
      "  CCLD     unregister\n",
      "  CCLD     err_compat\n",
      "  CCLD     error_test\n",
      "  CCLD     tcheck_version\n",
      "  CCLD     testmeta\n",
      "  CCLD     plugin\n",
      "  CCLD     links_env\n",
      "make[1]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/test'\n",
      "Making all in tools\n",
      "make[1]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/tools'\n",
      "Making all in lib\n",
      "make[2]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/tools/lib'\n",
      "  CC       h5tools.lo\n",
      "  CC       h5tools_dump.lo\n",
      "  CC       h5tools_str.lo\n",
      "  CC       h5tools_utils.lo\n",
      "  CC       h5diff_array.lo\n",
      "  CC       h5diff.lo\n",
      "  CC       h5diff_attr.lo\n",
      "  CC       h5diff_util.lo\n",
      "  CC       h5diff_dset.lo\n",
      "  CC       h5trav.lo\n",
      "  CC       h5tools_filters.lo\n",
      "  CC       h5tools_ref.lo\n",
      "  CC       h5tools_type.lo\n",
      "  CC       io_timer.lo\n",
      "  CCLD     libh5tools.la\n",
      "make[2]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/tools/lib'\n",
      "Making all in h5diff\n",
      "make[2]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/tools/h5diff'\n",
      "  CC       h5diff_main.o\n",
      "  CC       h5diff_common.o\n",
      "  CC       h5diffgentest.o\n",
      "  CCLD     h5diff\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/tools/h5diff/h5diffgentest.c:\u001b[m\u001b[K In function '\u001b[01m\u001b[Ktest_comp_vlen_strings\u001b[m\u001b[K':\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/tools/h5diff/h5diffgentest.c:3702:52:\u001b[m\u001b[K \u001b[01;35m\u001b[Kwarning: \u001b[m\u001b[Kassignment discards '\u001b[01m\u001b[Kconst\u001b[m\u001b[K' qualifier from pointer target type [enabled by default]\n",
      "     comp1_buf.str_vlen = comp1_buf.str_vlen_repeat = vlen_str_buf;\n",
      "\u001b[01;32m\u001b[K                                                    ^\u001b[m\u001b[K\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/tools/h5diff/h5diffgentest.c:3703:52:\u001b[m\u001b[K \u001b[01;35m\u001b[Kwarning: \u001b[m\u001b[Kassignment discards '\u001b[01m\u001b[Kconst\u001b[m\u001b[K' qualifier from pointer target type [enabled by default]\n",
      "     comp2_buf.str_vlen = comp2_buf.str_vlen_repeat = vlen_str_buf;\n",
      "\u001b[01;32m\u001b[K                                                    ^\u001b[m\u001b[K\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/tools/h5diff/h5diffgentest.c:3704:52:\u001b[m\u001b[K \u001b[01;35m\u001b[Kwarning: \u001b[m\u001b[Kassignment discards '\u001b[01m\u001b[Kconst\u001b[m\u001b[K' qualifier from pointer target type [enabled by default]\n",
      "     comp3_buf.str_vlen = comp3_buf.str_vlen_repeat = vlen_str_buf;\n",
      "\u001b[01;32m\u001b[K                                                    ^\u001b[m\u001b[K\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/tools/h5diff/h5diffgentest.c:3705:52:\u001b[m\u001b[K \u001b[01;35m\u001b[Kwarning: \u001b[m\u001b[Kassignment discards '\u001b[01m\u001b[Kconst\u001b[m\u001b[K' qualifier from pointer target type [enabled by default]\n",
      "     comp4_buf.str_vlen = comp4_buf.str_vlen_repeat = vlen_str_buf;\n",
      "\u001b[01;32m\u001b[K                                                    ^\u001b[m\u001b[K\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/tools/h5diff/h5diffgentest.c:3706:52:\u001b[m\u001b[K \u001b[01;35m\u001b[Kwarning: \u001b[m\u001b[Kassignment discards '\u001b[01m\u001b[Kconst\u001b[m\u001b[K' qualifier from pointer target type [enabled by default]\n",
      "     comp5_buf.str_vlen = comp5_buf.str_vlen_repeat = vlen_str_buf;\n",
      "\u001b[01;32m\u001b[K                                                    ^\u001b[m\u001b[K\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/tools/h5diff/h5diffgentest.c:3707:52:\u001b[m\u001b[K \u001b[01;35m\u001b[Kwarning: \u001b[m\u001b[Kassignment discards '\u001b[01m\u001b[Kconst\u001b[m\u001b[K' qualifier from pointer target type [enabled by default]\n",
      "     comp6_buf.str_vlen = comp6_buf.str_vlen_repeat = vlen_str_buf;\n",
      "\u001b[01;32m\u001b[K                                                    ^\u001b[m\u001b[K\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/tools/h5diff/h5diffgentest.c:3708:52:\u001b[m\u001b[K \u001b[01;35m\u001b[Kwarning: \u001b[m\u001b[Kassignment discards '\u001b[01m\u001b[Kconst\u001b[m\u001b[K' qualifier from pointer target type [enabled by default]\n",
      "     comp7_buf.str_vlen = comp7_buf.str_vlen_repeat = vlen_str_buf;\n",
      "\u001b[01;32m\u001b[K                                                    ^\u001b[m\u001b[K\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/tools/h5diff/h5diffgentest.c:3709:52:\u001b[m\u001b[K \u001b[01;35m\u001b[Kwarning: \u001b[m\u001b[Kassignment discards '\u001b[01m\u001b[Kconst\u001b[m\u001b[K' qualifier from pointer target type [enabled by default]\n",
      "     comp8_buf.str_vlen = comp8_buf.str_vlen_repeat = vlen_str_buf;\n",
      "\u001b[01;32m\u001b[K                                                    ^\u001b[m\u001b[K\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/tools/h5diff/h5diffgentest.c:3710:52:\u001b[m\u001b[K \u001b[01;35m\u001b[Kwarning: \u001b[m\u001b[Kassignment discards '\u001b[01m\u001b[Kconst\u001b[m\u001b[K' qualifier from pointer target type [enabled by default]\n",
      "     comp9_buf.str_vlen = comp9_buf.str_vlen_repeat = vlen_str_buf;\n",
      "\u001b[01;32m\u001b[K                                                    ^\u001b[m\u001b[K\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/tools/h5diff/h5diffgentest.c:3746:73:\u001b[m\u001b[K \u001b[01;35m\u001b[Kwarning: \u001b[m\u001b[Kassignment discards '\u001b[01m\u001b[Kconst\u001b[m\u001b[K' qualifier from pointer target type [enabled by default]\n",
      "         comp1_buf.str_array_vlen[i] = comp1_buf.str_vlen_array_again[i] = vlen_str_array_buf[i];\n",
      "\u001b[01;32m\u001b[K                                                                         ^\u001b[m\u001b[K\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/tools/h5diff/h5diffgentest.c:3747:73:\u001b[m\u001b[K \u001b[01;35m\u001b[Kwarning: \u001b[m\u001b[Kassignment discards '\u001b[01m\u001b[Kconst\u001b[m\u001b[K' qualifier from pointer target type [enabled by default]\n",
      "         comp2_buf.str_array_vlen[i] = comp2_buf.str_vlen_array_again[i] = vlen_str_array_buf[i];\n",
      "\u001b[01;32m\u001b[K                                                                         ^\u001b[m\u001b[K\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/tools/h5diff/h5diffgentest.c:3748:73:\u001b[m\u001b[K \u001b[01;35m\u001b[Kwarning: \u001b[m\u001b[Kassignment discards '\u001b[01m\u001b[Kconst\u001b[m\u001b[K' qualifier from pointer target type [enabled by default]\n",
      "         comp3_buf.str_array_vlen[i] = comp3_buf.str_vlen_array_again[i] = vlen_str_array_buf[i];\n",
      "\u001b[01;32m\u001b[K                                                                         ^\u001b[m\u001b[K\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/tools/h5diff/h5diffgentest.c:3749:73:\u001b[m\u001b[K \u001b[01;35m\u001b[Kwarning: \u001b[m\u001b[Kassignment discards '\u001b[01m\u001b[Kconst\u001b[m\u001b[K' qualifier from pointer target type [enabled by default]\n",
      "         comp4_buf.str_array_vlen[i] = comp4_buf.str_vlen_array_again[i] = vlen_str_array_buf[i];\n",
      "\u001b[01;32m\u001b[K                                                                         ^\u001b[m\u001b[K\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/tools/h5diff/h5diffgentest.c:3750:73:\u001b[m\u001b[K \u001b[01;35m\u001b[Kwarning: \u001b[m\u001b[Kassignment discards '\u001b[01m\u001b[Kconst\u001b[m\u001b[K' qualifier from pointer target type [enabled by default]\n",
      "         comp5_buf.str_array_vlen[i] = comp5_buf.str_vlen_array_again[i] = vlen_str_array_buf[i];\n",
      "\u001b[01;32m\u001b[K                                                                         ^\u001b[m\u001b[K\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/tools/h5diff/h5diffgentest.c:3751:73:\u001b[m\u001b[K \u001b[01;35m\u001b[Kwarning: \u001b[m\u001b[Kassignment discards '\u001b[01m\u001b[Kconst\u001b[m\u001b[K' qualifier from pointer target type [enabled by default]\n",
      "         comp6_buf.str_array_vlen[i] = comp6_buf.str_vlen_array_again[i] = vlen_str_array_buf[i];\n",
      "\u001b[01;32m\u001b[K                                                                         ^\u001b[m\u001b[K\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/tools/h5diff/h5diffgentest.c:3752:73:\u001b[m\u001b[K \u001b[01;35m\u001b[Kwarning: \u001b[m\u001b[Kassignment discards '\u001b[01m\u001b[Kconst\u001b[m\u001b[K' qualifier from pointer target type [enabled by default]\n",
      "         comp7_buf.str_array_vlen[i] = comp7_buf.str_vlen_array_again[i] = vlen_str_array_buf[i];\n",
      "\u001b[01;32m\u001b[K                                                                         ^\u001b[m\u001b[K\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/tools/h5diff/h5diffgentest.c:3753:73:\u001b[m\u001b[K \u001b[01;35m\u001b[Kwarning: \u001b[m\u001b[Kassignment discards '\u001b[01m\u001b[Kconst\u001b[m\u001b[K' qualifier from pointer target type [enabled by default]\n",
      "         comp8_buf.str_array_vlen[i] = comp8_buf.str_vlen_array_again[i] = vlen_str_array_buf[i];\n",
      "\u001b[01;32m\u001b[K                                                                         ^\u001b[m\u001b[K\n",
      "\u001b[01m\u001b[K/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/tools/h5diff/h5diffgentest.c:3754:73:\u001b[m\u001b[K \u001b[01;35m\u001b[Kwarning: \u001b[m\u001b[Kassignment discards '\u001b[01m\u001b[Kconst\u001b[m\u001b[K' qualifier from pointer target type [enabled by default]\n",
      "         comp9_buf.str_array_vlen[i] = comp9_buf.str_vlen_array_again[i] = vlen_str_array_buf[i];\n",
      "\u001b[01;32m\u001b[K                                                                         ^\u001b[m\u001b[K\n",
      "  CCLD     h5diffgentest\n",
      "make[2]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/tools/h5diff'\n",
      "Making all in h5ls\n",
      "make[2]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/tools/h5ls'\n",
      "  CC       h5ls.o\n",
      "  CCLD     h5ls\n",
      "make[2]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/tools/h5ls'\n",
      "Making all in h5dump\n",
      "make[2]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/tools/h5dump'\n",
      "  CC       h5dump.o\n",
      "  CC       h5dump_ddl.o\n",
      "  CC       h5dumpgentest.o\n",
      "  CC       h5dump_xml.o\n",
      "  CC       binread.o\n",
      "  CCLD     binread\n",
      "  CCLD     h5dump\n",
      "  CCLD     h5dumpgentest\n",
      "make[2]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/tools/h5dump'\n",
      "Making all in misc\n",
      "make[2]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/tools/misc'\n",
      "  CC       h5repart.o\n",
      "  CC       h5debug.o\n",
      "  CC       h5mkgrp.o\n",
      "  CC       h5repart_gentest.o\n",
      "  CC       repart_test.o\n",
      "  CC       talign.o\n",
      "  CCLD     h5repart\n",
      "  CCLD     h5debug\n",
      "  CCLD     h5repart_gentest\n",
      "  CCLD     h5mkgrp\n",
      "  CCLD     repart_test\n",
      "  CCLD     talign\n",
      "make[2]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/tools/misc'\n",
      "Making all in h5import\n",
      "make[2]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/tools/h5import'\n",
      "  CC       h5import.o\n",
      "  CC       h5importtest.o\n",
      "  CCLD     h5importtest\n",
      "  CCLD     h5import\n",
      "make[2]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/tools/h5import'\n",
      "Making all in h5repack\n",
      "make[2]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/tools/h5repack'\n",
      "  CC       h5repack.o\n",
      "  CC       dynlib_rpk.lo\n",
      "  CC       h5repack_copy.o\n",
      "  CC       h5repack_opttable.o\n",
      "  CC       h5repack_filters.o\n",
      "  CC       h5repack_parse.o\n",
      "  CC       h5repack_refs.o\n",
      "  CC       h5repack_main.o\n",
      "  CC       h5repack_verify.o\n",
      "  CC       testh5repack_detect_szip.o\n",
      "  CC       h5repacktst.o\n",
      "  CCLD     libdynlibadd.la\n",
      "  CCLD     h5repack\n",
      "  CCLD     testh5repack_detect_szip\n",
      "  CCLD     h5repacktst\n",
      "make[2]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/tools/h5repack'\n",
      "Making all in h5jam\n",
      "make[2]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/tools/h5jam'\n",
      "  CC       h5unjam.o\n",
      "  CC       h5jam.o\n",
      "  CC       h5jamgentest.o\n",
      "  CC       tellub.o\n",
      "  CCLD     h5jam\n",
      "  CC       getub.o\n",
      "  CCLD     h5unjam\n",
      "  CCLD     tellub\n",
      "  CCLD     h5jamgentest\n",
      "  CCLD     getub\n",
      "make[2]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/tools/h5jam'\n",
      "Making all in h5copy\n",
      "make[2]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/tools/h5copy'\n",
      "  CC       h5copygentest.o\n",
      "  CC       h5copy.o\n",
      "  CCLD     h5copygentest\n",
      "  CCLD     h5copy\n",
      "make[2]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/tools/h5copy'\n",
      "Making all in h5stat\n",
      "make[2]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/tools/h5stat'\n",
      "  CC       h5stat.o\n",
      "  CC       h5stat_gentest.o\n",
      "  CCLD     h5stat\n",
      "  CCLD     h5stat_gentest\n",
      "make[2]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/tools/h5stat'\n",
      "Making all in perform\n",
      "make[2]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/tools/perform'\n",
      "  CC       sio_perf.o\n",
      "  CC       sio_engine.o\n",
      "  CC       iopipe.o\n",
      "  CC       chunk.o\n",
      "  CC       zip_perf.o\n",
      "  CC       overhead.o\n",
      "  CC       perf_meta.o\n",
      "  CC       perf.o\n",
      "  CCLD     iopipe\n",
      "  CCLD     h5perf_serial\n",
      "  CCLD     chunk\n",
      "  CCLD     overhead\n",
      "  CCLD     perf_meta\n",
      "  CCLD     zip_perf\n",
      "  CCLD     perf\n",
      "make[2]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/tools/perform'\n",
      "make[2]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/tools'\n",
      "make[2]: Nothing to be done for `all-am'.\n",
      "make[2]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/tools'\n",
      "make[1]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/tools'\n",
      "Making all in .\n",
      "make[1]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work'\n",
      "make[1]: Nothing to be done for `all-am'.\n",
      "make[1]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work'\n",
      "Making all in hl\n",
      "make[1]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/hl'\n",
      "Making all in src\n",
      "make[2]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/hl/src'\n",
      "  CC       H5DO.lo\n",
      "  CC       H5DS.lo\n",
      "  CC       H5IM.lo\n",
      "  CC       H5LT.lo\n",
      "  CC       H5LTanalyze.lo\n",
      "  CC       H5LTparse.lo\n",
      "  CC       H5PT.lo\n",
      "  CC       H5TB.lo\n",
      "  CCLD     libhdf5_hl.la\n",
      "make[2]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/hl/src'\n",
      "Making all in test\n",
      "make[2]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/hl/test'\n",
      "  CC       test_lite.o\n",
      "  CC       test_image.o\n",
      "  CC       test_table.o\n",
      "  CC       test_file_image.o\n",
      "  CC       test_ds.o\n",
      "  CC       test_packet.o\n",
      "  CC       test_dset_opt.o\n",
      "  CC       test_packet_vlen.o\n",
      "  CCLD     test_lite\n",
      "  CCLD     test_image\n",
      "  CCLD     test_file_image\n",
      "  CCLD     test_table\n",
      "  CCLD     test_ds\n",
      "  CCLD     test_packet\n",
      "  CCLD     test_dset_opt\n",
      "make[2]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/hl/test'\n",
      "Making all in tools\n",
      "make[2]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/hl/tools'\n",
      "Making all in gif2h5\n",
      "make[3]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/hl/tools/gif2h5'\n",
      "  CC       gif2mem.o\n",
      "  CC       gif2hdf.o\n",
      "  CC       decompress.o\n",
      "  CC       gifread.o\n",
      "  CC       hdf2gif.o\n",
      "  CC       writehdf.o\n",
      "  CC       hdfgifwr.o\n",
      "  CC       h52gifgentst.o\n",
      "  CCLD     gif2h5\n",
      "  CCLD     h52gifgentst\n",
      "  CCLD     h52gif\n",
      "make[3]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/hl/tools/gif2h5'\n",
      "make[3]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/hl/tools'\n",
      "make[3]: Nothing to be done for `all-am'.\n",
      "make[3]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/hl/tools'\n",
      "make[2]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/hl/tools'\n",
      "make[2]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/hl'\n",
      "make[2]: Nothing to be done for `all-am'.\n",
      "make[2]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/hl'\n",
      "make[1]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/hl'\n",
      "make: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work'\n",
      "make: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work'\n",
      "Making install in src\n",
      "make[1]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/src'\n",
      "make[2]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/src'\n",
      " /bin/mkdir -p '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib'\n",
      " /bin/sh ../libtool   --mode=install /bin/install -c   libhdf5.la '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib'\n",
      "libtool: install: /bin/install -c .libs/libhdf5.so.10.2.0 /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib/libhdf5.so.10.2.0\n",
      "libtool: install: (cd /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib && { ln -s -f libhdf5.so.10.2.0 libhdf5.so.10 || { rm -f libhdf5.so.10 && ln -s libhdf5.so.10.2.0 libhdf5.so.10; }; })\n",
      "libtool: install: (cd /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib && { ln -s -f libhdf5.so.10.2.0 libhdf5.so || { rm -f libhdf5.so && ln -s libhdf5.so.10.2.0 libhdf5.so; }; })\n",
      "libtool: install: /bin/install -c .libs/libhdf5.lai /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib/libhdf5.la\n",
      "libtool: install: /bin/install -c .libs/libhdf5.a /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib/libhdf5.a\n",
      "libtool: install: chmod 644 /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib/libhdf5.a\n",
      "libtool: install: ranlib /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib/libhdf5.a\n",
      "libtool: finish: PATH=\"/usr/local/src/bluemix_jupyter_bundle.v4/notebook/bin:/usr/local/src/bluemix_jupyter_bundle.v4/notebook/system/bin:/usr/local/src/bluemix_jupyter_bundle.v4/notebook/freetype/bin:/usr/local/src/bluemix_jupyter_bundle.v4/notebook/bin:/usr/local/src/bluemix_jupyter_bundle.v4/notebook/system/bin:/usr/local/src/bluemix_jupyter_bundle.v4/notebook/freetype/bin:/bin:/sbin\" ldconfig -n /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib\n",
      "----------------------------------------------------------------------\n",
      "Libraries have been installed in:\n",
      "   /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib\n",
      "\n",
      "If you ever happen to want to link against installed libraries\n",
      "in a given directory, LIBDIR, you must either use libtool, and\n",
      "specify the full pathname of the library, or use the `-LLIBDIR'\n",
      "flag during linking and do at least one of the following:\n",
      "   - add LIBDIR to the `LD_LIBRARY_PATH' environment variable\n",
      "     during execution\n",
      "   - add LIBDIR to the `LD_RUN_PATH' environment variable\n",
      "     during linking\n",
      "   - use the `-Wl,-rpath -Wl,LIBDIR' linker flag\n",
      "   - have your system administrator add LIBDIR to `/etc/ld.so.conf'\n",
      "\n",
      "See any operating system documentation about shared libraries for\n",
      "more information, such as the ld(1) and ld.so(8) manual pages.\n",
      "----------------------------------------------------------------------\n",
      " /bin/mkdir -p '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include'\n",
      " /bin/install -c -m 644 /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/hdf5.h /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5api_adpt.h /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5overflow.h H5pubconf.h /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5public.h /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5version.h /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Apublic.h /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5ACpublic.h /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Cpublic.h /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Dpublic.h /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Epubgen.h /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Epublic.h /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Fpublic.h /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5FDpublic.h /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5FDcore.h /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5FDdirect.h /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5FDfamily.h /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5FDlog.h /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5FDmpi.h /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5FDmpio.h /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5FDmulti.h /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5FDsec2.h /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5FDstdio.h /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Gpublic.h /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Ipublic.h /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Lpublic.h /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5MMpublic.h /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Opublic.h /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Ppublic.h /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5PLextern.h /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5PLpublic.h /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Rpublic.h /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Spublic.h /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Tpublic.h /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/src/H5Zpublic.h '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include'\n",
      " /bin/mkdir -p '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib'\n",
      " /bin/install -c -m 644 libhdf5.settings '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib'\n",
      "make[2]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/src'\n",
      "make[1]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/src'\n",
      "Making install in test\n",
      "make[1]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/test'\n",
      "make[2]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/test'\n",
      " /bin/mkdir -p '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib'\n",
      " /bin/sh ../libtool   --mode=install /bin/install -c   libdynlib1.la libdynlib2.la libdynlib3.la '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib'\n",
      "libtool: install: /bin/install -c .libs/libdynlib1.so.0.0.0 /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib/libdynlib1.so.0.0.0\n",
      "libtool: install: (cd /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib && { ln -s -f libdynlib1.so.0.0.0 libdynlib1.so.0 || { rm -f libdynlib1.so.0 && ln -s libdynlib1.so.0.0.0 libdynlib1.so.0; }; })\n",
      "libtool: install: (cd /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib && { ln -s -f libdynlib1.so.0.0.0 libdynlib1.so || { rm -f libdynlib1.so && ln -s libdynlib1.so.0.0.0 libdynlib1.so; }; })\n",
      "libtool: install: /bin/install -c .libs/libdynlib1.lai /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib/libdynlib1.la\n",
      "libtool: install: /bin/install -c .libs/libdynlib2.so.0.0.0 /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib/libdynlib2.so.0.0.0\n",
      "libtool: install: (cd /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib && { ln -s -f libdynlib2.so.0.0.0 libdynlib2.so.0 || { rm -f libdynlib2.so.0 && ln -s libdynlib2.so.0.0.0 libdynlib2.so.0; }; })\n",
      "libtool: install: (cd /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib && { ln -s -f libdynlib2.so.0.0.0 libdynlib2.so || { rm -f libdynlib2.so && ln -s libdynlib2.so.0.0.0 libdynlib2.so; }; })\n",
      "libtool: install: /bin/install -c .libs/libdynlib2.lai /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib/libdynlib2.la\n",
      "libtool: install: /bin/install -c .libs/libdynlib3.so.0.0.0 /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib/libdynlib3.so.0.0.0\n",
      "libtool: install: (cd /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib && { ln -s -f libdynlib3.so.0.0.0 libdynlib3.so.0 || { rm -f libdynlib3.so.0 && ln -s libdynlib3.so.0.0.0 libdynlib3.so.0; }; })\n",
      "libtool: install: (cd /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib && { ln -s -f libdynlib3.so.0.0.0 libdynlib3.so || { rm -f libdynlib3.so && ln -s libdynlib3.so.0.0.0 libdynlib3.so; }; })\n",
      "libtool: install: /bin/install -c .libs/libdynlib3.lai /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib/libdynlib3.la\n",
      "libtool: install: /bin/install -c .libs/libdynlib1.a /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib/libdynlib1.a\n",
      "libtool: install: chmod 644 /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib/libdynlib1.a\n",
      "libtool: install: ranlib /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib/libdynlib1.a\n",
      "libtool: install: /bin/install -c .libs/libdynlib2.a /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib/libdynlib2.a\n",
      "libtool: install: chmod 644 /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib/libdynlib2.a\n",
      "libtool: install: ranlib /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib/libdynlib2.a\n",
      "libtool: install: /bin/install -c .libs/libdynlib3.a /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib/libdynlib3.a\n",
      "libtool: install: chmod 644 /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib/libdynlib3.a\n",
      "libtool: install: ranlib /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib/libdynlib3.a\n",
      "libtool: finish: PATH=\"/usr/local/src/bluemix_jupyter_bundle.v4/notebook/bin:/usr/local/src/bluemix_jupyter_bundle.v4/notebook/system/bin:/usr/local/src/bluemix_jupyter_bundle.v4/notebook/freetype/bin:/usr/local/src/bluemix_jupyter_bundle.v4/notebook/bin:/usr/local/src/bluemix_jupyter_bundle.v4/notebook/system/bin:/usr/local/src/bluemix_jupyter_bundle.v4/notebook/freetype/bin:/bin:/sbin\" ldconfig -n /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib\n",
      "----------------------------------------------------------------------\n",
      "Libraries have been installed in:\n",
      "   /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib\n",
      "\n",
      "If you ever happen to want to link against installed libraries\n",
      "in a given directory, LIBDIR, you must either use libtool, and\n",
      "specify the full pathname of the library, or use the `-LLIBDIR'\n",
      "flag during linking and do at least one of the following:\n",
      "   - add LIBDIR to the `LD_LIBRARY_PATH' environment variable\n",
      "     during execution\n",
      "   - add LIBDIR to the `LD_RUN_PATH' environment variable\n",
      "     during linking\n",
      "   - use the `-Wl,-rpath -Wl,LIBDIR' linker flag\n",
      "   - have your system administrator add LIBDIR to `/etc/ld.so.conf'\n",
      "\n",
      "See any operating system documentation about shared libraries for\n",
      "more information, such as the ld(1) and ld.so(8) manual pages.\n",
      "----------------------------------------------------------------------\n",
      "make  install-exec-hook\n",
      "make[3]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/test'\n",
      "rm -f /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib/*dynlib*\n",
      "make[3]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/test'\n",
      "make[2]: Nothing to be done for `install-data-am'.\n",
      "make[2]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/test'\n",
      "make[1]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/test'\n",
      "Making install in tools\n",
      "make[1]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/tools'\n",
      "Making install in lib\n",
      "make[2]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/tools/lib'\n",
      "make[3]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/tools/lib'\n",
      "make[3]: Nothing to be done for `install-exec-am'.\n",
      "make[3]: Nothing to be done for `install-data-am'.\n",
      "make[3]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/tools/lib'\n",
      "make[2]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/tools/lib'\n",
      "Making install in h5diff\n",
      "make[2]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/tools/h5diff'\n",
      "make[3]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/tools/h5diff'\n",
      " /bin/mkdir -p '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/bin'\n",
      "  /bin/sh ../../libtool   --mode=install /bin/install -c h5diff '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/bin'\n",
      "libtool: install: /bin/install -c .libs/h5diff /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/bin/h5diff\n",
      "make[3]: Nothing to be done for `install-data-am'.\n",
      "make[3]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/tools/h5diff'\n",
      "make[2]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/tools/h5diff'\n",
      "Making install in h5ls\n",
      "make[2]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/tools/h5ls'\n",
      "make[3]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/tools/h5ls'\n",
      " /bin/mkdir -p '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/bin'\n",
      "  /bin/sh ../../libtool   --mode=install /bin/install -c h5ls '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/bin'\n",
      "libtool: install: /bin/install -c .libs/h5ls /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/bin/h5ls\n",
      "make[3]: Nothing to be done for `install-data-am'.\n",
      "make[3]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/tools/h5ls'\n",
      "make[2]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/tools/h5ls'\n",
      "Making install in h5dump\n",
      "make[2]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/tools/h5dump'\n",
      "make[3]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/tools/h5dump'\n",
      " /bin/mkdir -p '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/bin'\n",
      "  /bin/sh ../../libtool   --mode=install /bin/install -c h5dump '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/bin'\n",
      "libtool: install: /bin/install -c .libs/h5dump /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/bin/h5dump\n",
      "make[3]: Nothing to be done for `install-data-am'.\n",
      "make[3]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/tools/h5dump'\n",
      "make[2]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/tools/h5dump'\n",
      "Making install in misc\n",
      "make[2]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/tools/misc'\n",
      "make[3]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/tools/misc'\n",
      " /bin/mkdir -p '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/bin'\n",
      "  /bin/sh ../../libtool   --mode=install /bin/install -c h5debug h5repart h5mkgrp '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/bin'\n",
      "libtool: install: /bin/install -c .libs/h5debug /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/bin/h5debug\n",
      "libtool: install: /bin/install -c .libs/h5repart /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/bin/h5repart\n",
      "libtool: install: /bin/install -c .libs/h5mkgrp /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/bin/h5mkgrp\n",
      " /bin/mkdir -p '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/bin'\n",
      " /bin/install -c h5redeploy '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/bin'\n",
      "make[3]: Nothing to be done for `install-data-am'.\n",
      "make[3]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/tools/misc'\n",
      "make[2]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/tools/misc'\n",
      "Making install in h5import\n",
      "make[2]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/tools/h5import'\n",
      "make[3]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/tools/h5import'\n",
      " /bin/mkdir -p '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/bin'\n",
      "  /bin/sh ../../libtool   --mode=install /bin/install -c h5import '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/bin'\n",
      "libtool: install: /bin/install -c .libs/h5import /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/bin/h5import\n",
      "make[3]: Nothing to be done for `install-data-am'.\n",
      "make[3]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/tools/h5import'\n",
      "make[2]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/tools/h5import'\n",
      "Making install in h5repack\n",
      "make[2]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/tools/h5repack'\n",
      "make[3]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/tools/h5repack'\n",
      " /bin/mkdir -p '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib'\n",
      " /bin/sh ../../libtool   --mode=install /bin/install -c   libdynlibadd.la '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib'\n",
      "libtool: install: /bin/install -c .libs/libdynlibadd.so.0.0.0 /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib/libdynlibadd.so.0.0.0\n",
      "libtool: install: (cd /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib && { ln -s -f libdynlibadd.so.0.0.0 libdynlibadd.so.0 || { rm -f libdynlibadd.so.0 && ln -s libdynlibadd.so.0.0.0 libdynlibadd.so.0; }; })\n",
      "libtool: install: (cd /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib && { ln -s -f libdynlibadd.so.0.0.0 libdynlibadd.so || { rm -f libdynlibadd.so && ln -s libdynlibadd.so.0.0.0 libdynlibadd.so; }; })\n",
      "libtool: install: /bin/install -c .libs/libdynlibadd.lai /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib/libdynlibadd.la\n",
      "libtool: install: /bin/install -c .libs/libdynlibadd.a /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib/libdynlibadd.a\n",
      "libtool: install: chmod 644 /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib/libdynlibadd.a\n",
      "libtool: install: ranlib /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib/libdynlibadd.a\n",
      "libtool: finish: PATH=\"/usr/local/src/bluemix_jupyter_bundle.v4/notebook/bin:/usr/local/src/bluemix_jupyter_bundle.v4/notebook/system/bin:/usr/local/src/bluemix_jupyter_bundle.v4/notebook/freetype/bin:/usr/local/src/bluemix_jupyter_bundle.v4/notebook/bin:/usr/local/src/bluemix_jupyter_bundle.v4/notebook/system/bin:/usr/local/src/bluemix_jupyter_bundle.v4/notebook/freetype/bin:/bin:/sbin\" ldconfig -n /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib\n",
      "----------------------------------------------------------------------\n",
      "Libraries have been installed in:\n",
      "   /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib\n",
      "\n",
      "If you ever happen to want to link against installed libraries\n",
      "in a given directory, LIBDIR, you must either use libtool, and\n",
      "specify the full pathname of the library, or use the `-LLIBDIR'\n",
      "flag during linking and do at least one of the following:\n",
      "   - add LIBDIR to the `LD_LIBRARY_PATH' environment variable\n",
      "     during execution\n",
      "   - add LIBDIR to the `LD_RUN_PATH' environment variable\n",
      "     during linking\n",
      "   - use the `-Wl,-rpath -Wl,LIBDIR' linker flag\n",
      "   - have your system administrator add LIBDIR to `/etc/ld.so.conf'\n",
      "\n",
      "See any operating system documentation about shared libraries for\n",
      "more information, such as the ld(1) and ld.so(8) manual pages.\n",
      "----------------------------------------------------------------------\n",
      " /bin/mkdir -p '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/bin'\n",
      "  /bin/sh ../../libtool   --mode=install /bin/install -c h5repack '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/bin'\n",
      "libtool: install: /bin/install -c .libs/h5repack /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/bin/h5repack\n",
      "make  install-exec-hook\n",
      "make[4]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/tools/h5repack'\n",
      "rm -f /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib/*dynlib*\n",
      "make[4]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/tools/h5repack'\n",
      "make[3]: Nothing to be done for `install-data-am'.\n",
      "make[3]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/tools/h5repack'\n",
      "make[2]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/tools/h5repack'\n",
      "Making install in h5jam\n",
      "make[2]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/tools/h5jam'\n",
      "make[3]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/tools/h5jam'\n",
      " /bin/mkdir -p '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/bin'\n",
      "  /bin/sh ../../libtool   --mode=install /bin/install -c h5jam h5unjam '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/bin'\n",
      "libtool: install: /bin/install -c .libs/h5jam /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/bin/h5jam\n",
      "libtool: install: /bin/install -c .libs/h5unjam /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/bin/h5unjam\n",
      "make[3]: Nothing to be done for `install-data-am'.\n",
      "make[3]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/tools/h5jam'\n",
      "make[2]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/tools/h5jam'\n",
      "Making install in h5copy\n",
      "make[2]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/tools/h5copy'\n",
      "make[3]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/tools/h5copy'\n",
      " /bin/mkdir -p '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/bin'\n",
      "  /bin/sh ../../libtool   --mode=install /bin/install -c h5copy '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/bin'\n",
      "libtool: install: /bin/install -c .libs/h5copy /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/bin/h5copy\n",
      "make[3]: Nothing to be done for `install-data-am'.\n",
      "make[3]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/tools/h5copy'\n",
      "make[2]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/tools/h5copy'\n",
      "Making install in h5stat\n",
      "make[2]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/tools/h5stat'\n",
      "make[3]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/tools/h5stat'\n",
      " /bin/mkdir -p '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/bin'\n",
      "  /bin/sh ../../libtool   --mode=install /bin/install -c h5stat '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/bin'\n",
      "libtool: install: /bin/install -c .libs/h5stat /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/bin/h5stat\n",
      "make[3]: Nothing to be done for `install-data-am'.\n",
      "make[3]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/tools/h5stat'\n",
      "make[2]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/tools/h5stat'\n",
      "Making install in perform\n",
      "make[2]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/tools/perform'\n",
      "make[3]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/tools/perform'\n",
      " /bin/mkdir -p '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/bin'\n",
      "  /bin/sh ../../libtool   --mode=install /bin/install -c h5perf_serial '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/bin'\n",
      "libtool: install: /bin/install -c .libs/h5perf_serial /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/bin/h5perf_serial\n",
      "make[3]: Nothing to be done for `install-data-am'.\n",
      "make[3]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/tools/perform'\n",
      "make[2]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/tools/perform'\n",
      "make[2]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/tools'\n",
      "make[3]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/tools'\n",
      "make[3]: Nothing to be done for `install-exec-am'.\n",
      "make[3]: Nothing to be done for `install-data-am'.\n",
      "make[3]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/tools'\n",
      "make[2]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/tools'\n",
      "make[1]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/tools'\n",
      "Making install in .\n",
      "make[1]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work'\n",
      "make[2]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work'\n",
      "make[2]: Nothing to be done for `install-exec-am'.\n",
      "make[2]: Nothing to be done for `install-data-am'.\n",
      "make[2]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work'\n",
      "make[1]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work'\n",
      "Making install in hl\n",
      "make[1]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/hl'\n",
      "Making install in src\n",
      "make[2]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/hl/src'\n",
      "make[3]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/hl/src'\n",
      " /bin/mkdir -p '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib'\n",
      " /bin/sh ../../libtool   --mode=install /bin/install -c   libhdf5_hl.la '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib'\n",
      "libtool: install: warning: relinking `libhdf5_hl.la'\n",
      "libtool: install: (cd /gpfs/fs01/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/hl/src; /bin/sh /gpfs/fs01/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/libtool  --silent --tag CC --mode=relink gcc -std=c99 -version-info 11:0:1 -o libhdf5_hl.la -rpath /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib H5DO.lo H5DS.lo H5IM.lo H5LT.lo H5LTanalyze.lo H5LTparse.lo H5PT.lo H5TB.lo ../../src/libhdf5.la -lz -ldl -lm )\n",
      "libtool: install: /bin/install -c .libs/libhdf5_hl.so.10.1.0T /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib/libhdf5_hl.so.10.1.0\n",
      "libtool: install: (cd /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib && { ln -s -f libhdf5_hl.so.10.1.0 libhdf5_hl.so.10 || { rm -f libhdf5_hl.so.10 && ln -s libhdf5_hl.so.10.1.0 libhdf5_hl.so.10; }; })\n",
      "libtool: install: (cd /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib && { ln -s -f libhdf5_hl.so.10.1.0 libhdf5_hl.so || { rm -f libhdf5_hl.so && ln -s libhdf5_hl.so.10.1.0 libhdf5_hl.so; }; })\n",
      "libtool: install: /bin/install -c .libs/libhdf5_hl.lai /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib/libhdf5_hl.la\n",
      "libtool: install: /bin/install -c .libs/libhdf5_hl.a /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib/libhdf5_hl.a\n",
      "libtool: install: chmod 644 /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib/libhdf5_hl.a\n",
      "libtool: install: ranlib /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib/libhdf5_hl.a\n",
      "libtool: finish: PATH=\"/usr/local/src/bluemix_jupyter_bundle.v4/notebook/bin:/usr/local/src/bluemix_jupyter_bundle.v4/notebook/system/bin:/usr/local/src/bluemix_jupyter_bundle.v4/notebook/freetype/bin:/usr/local/src/bluemix_jupyter_bundle.v4/notebook/bin:/usr/local/src/bluemix_jupyter_bundle.v4/notebook/system/bin:/usr/local/src/bluemix_jupyter_bundle.v4/notebook/freetype/bin:/bin:/sbin\" ldconfig -n /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib\n",
      "----------------------------------------------------------------------\n",
      "Libraries have been installed in:\n",
      "   /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib\n",
      "\n",
      "If you ever happen to want to link against installed libraries\n",
      "in a given directory, LIBDIR, you must either use libtool, and\n",
      "specify the full pathname of the library, or use the `-LLIBDIR'\n",
      "flag during linking and do at least one of the following:\n",
      "   - add LIBDIR to the `LD_LIBRARY_PATH' environment variable\n",
      "     during execution\n",
      "   - add LIBDIR to the `LD_RUN_PATH' environment variable\n",
      "     during linking\n",
      "   - use the `-Wl,-rpath -Wl,LIBDIR' linker flag\n",
      "   - have your system administrator add LIBDIR to `/etc/ld.so.conf'\n",
      "\n",
      "See any operating system documentation about shared libraries for\n",
      "more information, such as the ld(1) and ld.so(8) manual pages.\n",
      "----------------------------------------------------------------------\n",
      " /bin/mkdir -p '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include'\n",
      " /bin/install -c -m 644 /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/hl/src/hdf5_hl.h /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/hl/src/H5DOpublic.h /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/hl/src/H5IMpublic.h /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/hl/src/H5LTpublic.h /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/hl/src/H5TBpublic.h /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/hl/src/H5DSpublic.h /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/hl/src/H5PTpublic.h '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include'\n",
      "make[3]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/hl/src'\n",
      "make[2]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/hl/src'\n",
      "Making install in test\n",
      "make[2]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/hl/test'\n",
      "make[3]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/hl/test'\n",
      "make[3]: Nothing to be done for `install-exec-am'.\n",
      "make[3]: Nothing to be done for `install-data-am'.\n",
      "make[3]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/hl/test'\n",
      "make[2]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/hl/test'\n",
      "Making install in tools\n",
      "make[2]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/hl/tools'\n",
      "Making install in gif2h5\n",
      "make[3]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/hl/tools/gif2h5'\n",
      "make[4]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/hl/tools/gif2h5'\n",
      " /bin/mkdir -p '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/bin'\n",
      "  /bin/sh ../../../libtool   --mode=install /bin/install -c gif2h5 h52gif '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/bin'\n",
      "libtool: install: /bin/install -c .libs/gif2h5 /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/bin/gif2h5\n",
      "libtool: install: /bin/install -c .libs/h52gif /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/bin/h52gif\n",
      "make[4]: Nothing to be done for `install-data-am'.\n",
      "make[4]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/hl/tools/gif2h5'\n",
      "make[3]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/hl/tools/gif2h5'\n",
      "make[3]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/hl/tools'\n",
      "make[4]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/hl/tools'\n",
      "make[4]: Nothing to be done for `install-exec-am'.\n",
      "make[4]: Nothing to be done for `install-data-am'.\n",
      "make[4]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/hl/tools'\n",
      "make[3]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/hl/tools'\n",
      "make[2]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/hl/tools'\n",
      "make[2]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/hl'\n",
      "make[3]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/hl'\n",
      "make[3]: Nothing to be done for `install-exec-am'.\n",
      "make[3]: Nothing to be done for `install-data-am'.\n",
      "make[3]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/hl'\n",
      "make[2]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/hl'\n",
      "make[1]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/hl'\n",
      "for d in examples  hl; do               \\\n",
      "    (cd $d && make  install-examples) || exit 1;           \\\n",
      "done\n",
      "make[1]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/examples'\n",
      "/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/bin/mkdirs /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/share/hdf5_examples/c\n",
      "+ /bin/install -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/examples/h5_write.c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/share/hdf5_examples/c/.\n",
      "+ /bin/install -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/examples/h5_read.c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/share/hdf5_examples/c/.\n",
      "+ /bin/install -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/examples/h5_extend_write.c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/share/hdf5_examples/c/.\n",
      "+ /bin/install -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/examples/h5_chunk_read.c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/share/hdf5_examples/c/.\n",
      "+ /bin/install -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/examples/h5_crtgrpd.c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/share/hdf5_examples/c/.\n",
      "+ /bin/install -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/examples/h5_subset.c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/share/hdf5_examples/c/.\n",
      "+ /bin/install -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/examples/h5_cmprss.c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/share/hdf5_examples/c/.\n",
      "+ /bin/install -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/examples/h5_rdwt.c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/share/hdf5_examples/c/.\n",
      "+ /bin/install -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/examples/h5_crtgrpar.c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/share/hdf5_examples/c/.\n",
      "+ /bin/install -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/examples/h5_extend.c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/share/hdf5_examples/c/.\n",
      "+ /bin/install -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/examples/h5_crtatt.c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/share/hdf5_examples/c/.\n",
      "+ /bin/install -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/examples/h5_crtgrp.c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/share/hdf5_examples/c/.\n",
      "+ /bin/install -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/examples/h5_crtdat.c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/share/hdf5_examples/c/.\n",
      "+ /bin/install -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/examples/h5_compound.c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/share/hdf5_examples/c/.\n",
      "+ /bin/install -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/examples/h5_group.c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/share/hdf5_examples/c/.\n",
      "+ /bin/install -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/examples/h5_select.c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/share/hdf5_examples/c/.\n",
      "+ /bin/install -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/examples/h5_attribute.c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/share/hdf5_examples/c/.\n",
      "+ /bin/install -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/examples/h5_mount.c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/share/hdf5_examples/c/.\n",
      "+ /bin/install -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/examples/h5_reference.c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/share/hdf5_examples/c/.\n",
      "+ /bin/install -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/examples/h5_drivers.c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/share/hdf5_examples/c/.\n",
      "+ /bin/install -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/examples/h5_extlink.c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/share/hdf5_examples/c/.\n",
      "+ /bin/install -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/examples/h5_elink_unix2win.c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/share/hdf5_examples/c/.\n",
      "+ /bin/install -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/examples/h5_ref2reg.c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/share/hdf5_examples/c/.\n",
      "+ /bin/install -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/examples/h5_shared_mesg.c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/share/hdf5_examples/c/.\n",
      "+ /bin/install -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/examples/ph5example.c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/share/hdf5_examples/c/.\n",
      "+ /bin/install -c run-c-ex.sh /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/share/hdf5_examples/c/.\n",
      "+ /bin/install -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/examples/README /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/share/hdf5_examples/.\n",
      "+ /bin/install -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/examples/run-all-ex.sh /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/share/hdf5_examples/.\n",
      "make[1]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/examples'\n",
      "make[1]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/hl'\n",
      "for d in examples ; do               \\\n",
      "    (cd $d && make  install-examples) || exit 1;           \\\n",
      "done\n",
      "make[2]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/hl/examples'\n",
      "/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/bin/mkdirs /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/share/hdf5_examples/hl/c\n",
      "+ /bin/install -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/hl/examples/ex_lite1.c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/share/hdf5_examples/hl/c/.\n",
      "+ /bin/install -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/hl/examples/ex_lite2.c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/share/hdf5_examples/hl/c/.\n",
      "+ /bin/install -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/hl/examples/ex_lite3.c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/share/hdf5_examples/hl/c/.\n",
      "+ /bin/install -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/hl/examples/ptExampleFL.c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/share/hdf5_examples/hl/c/.\n",
      "+ /bin/install -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/hl/examples/ex_image1.c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/share/hdf5_examples/hl/c/.\n",
      "+ /bin/install -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/hl/examples/ex_image2.c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/share/hdf5_examples/hl/c/.\n",
      "+ /bin/install -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/hl/examples/ex_table_01.c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/share/hdf5_examples/hl/c/.\n",
      "+ /bin/install -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/hl/examples/ex_table_02.c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/share/hdf5_examples/hl/c/.\n",
      "+ /bin/install -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/hl/examples/ex_table_03.c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/share/hdf5_examples/hl/c/.\n",
      "+ /bin/install -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/hl/examples/ex_table_04.c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/share/hdf5_examples/hl/c/.\n",
      "+ /bin/install -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/hl/examples/ex_table_05.c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/share/hdf5_examples/hl/c/.\n",
      "+ /bin/install -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/hl/examples/ex_table_06.c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/share/hdf5_examples/hl/c/.\n",
      "+ /bin/install -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/hl/examples/ex_table_07.c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/share/hdf5_examples/hl/c/.\n",
      "+ /bin/install -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/hl/examples/ex_table_08.c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/share/hdf5_examples/hl/c/.\n",
      "+ /bin/install -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/hl/examples/ex_table_09.c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/share/hdf5_examples/hl/c/.\n",
      "+ /bin/install -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/hl/examples/ex_table_10.c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/share/hdf5_examples/hl/c/.\n",
      "+ /bin/install -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/hl/examples/ex_table_11.c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/share/hdf5_examples/hl/c/.\n",
      "+ /bin/install -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/hl/examples/ex_table_12.c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/share/hdf5_examples/hl/c/.\n",
      "+ /bin/install -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/hl/examples/ex_ds1.c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/share/hdf5_examples/hl/c/.\n",
      "+ /bin/install -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/hl/examples/image24pixel.txt /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/share/hdf5_examples/hl/c/.\n",
      "+ /bin/install -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/hl/examples/image8.txt /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/share/hdf5_examples/hl/c/.\n",
      "+ /bin/install -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/hl/examples/pal_rgb.h /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/share/hdf5_examples/hl/c/.\n",
      "+ /bin/install -c run-hlc-ex.sh /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/share/hdf5_examples/hl/c/.\n",
      "+ /bin/install -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5-1.8.17/hl/examples/run-hl-ex.sh /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/share/hdf5_examples/hl/.\n",
      "make[2]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/hl/examples'\n",
      "make[1]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/hl'\n",
      "make: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work'\n"
     ]
    }
   ],
   "source": [
    "# WARNING:  This cell will take a while ... ~10-12 mins with high CPU on the browser.  \n",
    "# Your browser may even become unresponsive for a period of time.  Just be patient until the cell execution is complete.  Go grab something to drink.\n",
    "# It is basically configuring and compiling the native hdf5 libs that are required by H5py \n",
    "# NOTE:  You may need to refresh your browser after this cell completes.  Carefully monitor the kernel indicator in the upper right as well.\n",
    "#        The good news is that this is a one time operation. After the native libs are built, they will be available to all existing and new notebooks within this Spark Instance.\n",
    "if not isHDF5Installed:\n",
    "    !make -w -j2 && make -w install"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "<div class=\"alert alert-danger\" role=\"alert\">\n",
    "  <strong>WARNING</strong> You may have to reload your browser to continue.  The Make and Make Install process can sometimes cause the notebook to lose it's kernel context.  Don't worry, all of the compiled files will persist across the browser reload.\n",
    "</div>"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Housekeeping"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 16,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "HDF5 directories for facilitating HDF5 build and install have been removed\n"
     ]
    }
   ],
   "source": [
    "# Re-evaluate installation status\n",
    "isHDF5Installed = os.path.isfile(hdf5Dir + \"/hdf5/bin/h5cc\")\n",
    "\n",
    "if isHDF5Installed:\n",
    "    # Remove all of configure generated by-products\n",
    "    !rm -rf * 2>/dev/null\n",
    "    # Remove the extracted source folder\n",
    "    !rm -rf $hdf5Dir/hdf5-1.8.17 2>/dev/null\n",
    "    # Remove the tar gzip file\n",
    "    !rm $hdf5Dir/hdf5-1.8.17.tar.gz 2>/dev/null\n",
    "    print \"HDF5 directories for facilitating HDF5 build and install have been removed\"\n",
    "else:\n",
    "    print \"HDF5 build and install seems to have failed.  Cannot local <HDF5_Install_Point>/bin/h5cc\""
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {
    "collapsed": true
   },
   "source": [
    "# Now Let's take a look @ netCDF4 and build it with HDF5 support ;-)\n",
    "[Sample Notebooks Exploring netcdf data](http://nbviewer.jupyter.org/url/www.hydro.washington.edu/~jhamman/hydro-logic/downloads/notebooks/2013-10-12-plot-netcdf-data.ipynb)\n",
    "[Quickstart](http://unidata.github.io/netcdf4-python/#section1)"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Run Configure for the netCDF4 source directory"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 17,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "configure: netCDF 4.4.0\n",
      "checking build system type... x86_64-unknown-linux-gnu\n",
      "checking host system type... x86_64-unknown-linux-gnu\n",
      "checking target system type... x86_64-unknown-linux-gnu\n",
      "checking for a BSD-compatible install... /bin/install -c\n",
      "checking whether build environment is sane... yes\n",
      "checking for a thread-safe mkdir -p... /bin/mkdir -p\n",
      "checking for gawk... gawk\n",
      "checking whether make sets $(MAKE)... yes\n",
      "checking whether make supports nested variables... yes\n",
      "checking whether to enable maintainer-specific portions of Makefiles... no\n",
      "configure: checking user options\n",
      "checking whether a win32 DLL is desired... no\n",
      "checking whether a NCIO_MINBLOCKSIZE was specified... 256\n",
      "checking if fsync support is enabled... no\n",
      "checking if jna bug workaround is enabledd... no\n",
      "checking whether extra valgrind tests should be run... no\n",
      "checking whether we should build netCDF-4... yes\n",
      "checking do we require hdf5 dynamic-loading support... yes\n",
      "checking whether reading of HDF4 SD files is to be enabled... no\n",
      "checking whether to fetch some sample HDF4 files from Unidata ftp site to test HDF4 reading (requires wget)... no\n",
      "checking whether we should attempt to install netcdf-fortran (EXPERIMENTAL)... no\n",
      "checking whether extra example tests should be run... no\n",
      "checking whether parallel IO tests should be run... no\n",
      "checking whether a default chunk size in bytes was specified... 4194304\n",
      "checking whether a maximum per-variable cache size for HDF5 was specified... 67108864\n",
      "checking whether a number of chunks for the default per-variable cache was specified... 10\n",
      "checking whether a default file cache size for HDF5 was specified... 4194304\n",
      "checking whether a default file cache maximum number of elements for HDF5 was specified... 1009\n",
      "checking whether a default cache preemption for HDF5 was specified... 0.75\n",
      "checking whether netCDF-4 logging is enabled... no\n",
      "checking whether DAP client is to be built... yes\n",
      "checking for style of include used by make... GNU\n",
      "checking for gcc... gcc\n",
      "checking whether the C compiler works... yes\n",
      "checking for C compiler default output file name... a.out\n",
      "checking for suffix of executables... \n",
      "checking whether we are cross compiling... no\n",
      "checking for suffix of object files... o\n",
      "checking whether we are using the GNU C compiler... yes\n",
      "checking whether gcc accepts -g... yes\n",
      "checking for gcc option to accept ISO C89... none needed\n",
      "checking whether gcc understands -c and -o together... yes\n",
      "checking dependency style of gcc... gcc3\n",
      "checking for curl_easy_setopt in -lcurl... no\n",
      "configure: libcurl not found; disabling remote protocol(s) support\n",
      "checking whether dap remote testing should be enabled (default on)... no\n",
      "checking whether dap remote authorization testing should be enabled (default off)... no\n",
      "checking whether netcdf4 group names should be enabled (default on)... configure: dap groups disabled because dap disabled or netcdf-4 disabled\n",
      "no\n",
      "checking whether the time-consuming dap tests should be enabled (default off)... no\n",
      "checking whether netCDF extra tests should be run (developers only)... yes\n",
      "checking whether FFIO will be used... no\n",
      "checking whether STDIO will be used... no\n",
      "checking whether examples should be built... yes\n",
      "checking whether v2 netCDF API should be built... yes\n",
      "checking whether the ncgen/ncdump/nccopy should be built... yes\n",
      "checking whether test should be built and run... yes\n",
      "checking whether large file (> 2GB) tests should be run... no\n",
      "checking whether benchmarks should be run (experimental)... no\n",
      "checking whether extreme numbers should be used in tests... yes\n",
      "checking where to put large temp files if large file tests are run... .\n",
      "configure: finding C compiler\n",
      "checking for gcc... (cached) gcc\n",
      "checking whether we are using the GNU C compiler... (cached) yes\n",
      "checking whether gcc accepts -g... (cached) yes\n",
      "checking for gcc option to accept ISO C89... (cached) none needed\n",
      "checking whether gcc understands -c and -o together... (cached) yes\n",
      "checking dependency style of gcc... (cached) gcc3\n",
      "checking for an ANSI C-conforming const... yes\n",
      "checking whether CURLOPT_USERNAME is defined... no\n",
      "checking whether CURLOPT_PASSWORD is defined... no\n",
      "checking whether CURLOPT_KEYPASSWD is defined... no\n",
      "checking whether CURLINFO_RESPONSE_CODE is defined... no\n",
      "checking whether CURLOPT_CHUNK_BGN_FUNCTION is defined... no\n",
      "configure: setting up libtool\n",
      "checking how to print strings... printf\n",
      "checking for a sed that does not truncate output... /bin/sed\n",
      "checking for grep that handles long lines and -e... /bin/grep\n",
      "checking for egrep... /bin/grep -E\n",
      "checking for fgrep... /bin/grep -F\n",
      "checking for ld used by gcc... /bin/ld\n",
      "checking if the linker (/bin/ld) is GNU ld... yes\n",
      "checking for BSD- or MS-compatible name lister (nm)... /bin/nm -B\n",
      "checking the name lister (/bin/nm -B) interface... BSD nm\n",
      "checking whether ln -s works... yes\n",
      "checking the maximum length of command line arguments... 1572864\n",
      "checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop\n",
      "checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop\n",
      "checking for /bin/ld option to reload object files... -r\n",
      "checking for objdump... objdump\n",
      "checking how to recognize dependent libraries... pass_all\n",
      "checking for dlltool... no\n",
      "checking how to associate runtime and link libraries... printf %s\\n\n",
      "checking for ar... ar\n",
      "checking for archiver @FILE support... @\n",
      "checking for strip... strip\n",
      "checking for ranlib... ranlib\n",
      "checking command to parse /bin/nm -B output from gcc object... ok\n",
      "checking for sysroot... no\n",
      "checking for a working dd... /bin/dd\n",
      "checking how to truncate binary pipes... /bin/dd bs=4096 count=1\n",
      "checking for mt... no\n",
      "checking if : is a manifest tool... no\n",
      "checking how to run the C preprocessor... gcc -E\n",
      "checking for ANSI C header files... yes\n",
      "checking for sys/types.h... yes\n",
      "checking for sys/stat.h... yes\n",
      "checking for stdlib.h... yes\n",
      "checking for string.h... yes\n",
      "checking for memory.h... yes\n",
      "checking for strings.h... yes\n",
      "checking for inttypes.h... yes\n",
      "checking for stdint.h... yes\n",
      "checking for unistd.h... yes\n",
      "checking for dlfcn.h... yes\n",
      "checking for objdir... .libs\n",
      "checking if gcc supports -fno-rtti -fno-exceptions... no\n",
      "checking for gcc option to produce PIC... -fPIC -DPIC\n",
      "checking if gcc PIC flag -fPIC -DPIC works... yes\n",
      "checking if gcc static flag -static works... no\n",
      "checking if gcc supports -c -o file.o... yes\n",
      "checking if gcc supports -c -o file.o... (cached) yes\n",
      "checking whether the gcc linker (/bin/ld -m elf_x86_64) supports shared libraries... yes\n",
      "checking whether -lc should be explicitly linked in... no\n",
      "checking dynamic linker characteristics... GNU/Linux ld.so\n",
      "checking how to hardcode library paths into programs... immediate\n",
      "checking whether stripping libraries is possible... yes\n",
      "checking if libtool supports shared libraries... yes\n",
      "checking whether to build shared libraries... yes\n",
      "checking whether to build static libraries... yes\n",
      "configure: finding other utilities\n",
      "checking for m4... m4\n",
      "checking for doxygen... doxygen\n",
      "checking for dot... no\n",
      "configure: WARNING: dot not found - will use simple charts in documentation\n",
      "checking for special C compiler options needed for large files... no\n",
      "checking for _FILE_OFFSET_BITS value needed for large files... no\n",
      "configure: displaying some results\n",
      "checking CPPFLAGS... -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include\n",
      "checking CC CFLAGS... gcc -g -O2\n",
      "checking type gcc... gcc is /bin/gcc\n",
      "checking CXX... unset\n",
      "checking FC... unset\n",
      "checking F90... unset\n",
      "checking AR... ar\n",
      "checking AR_FLAGS... cru\n",
      "checking type ar... ar is /bin/ar\n",
      "checking NM... /bin/nm -B\n",
      "checking NMFLAGS... \n",
      "configure: checking types, headers, and functions\n",
      "checking for stdlib.h... (cached) yes\n",
      "checking for sys/types.h... (cached) yes\n",
      "checking sys/param.h usability... yes\n",
      "checking sys/param.h presence... yes\n",
      "checking for sys/param.h... yes\n",
      "checking for dirent.h that defines DIR... yes\n",
      "checking for library containing opendir... none required\n",
      "checking for ANSI C header files... (cached) yes\n",
      "checking for sys/wait.h that is POSIX.1 compatible... yes\n",
      "checking whether time.h and sys/time.h may both be included... yes\n",
      "checking locale.h usability... yes\n",
      "checking locale.h presence... yes\n",
      "checking for locale.h... yes\n",
      "checking stdio.h usability... yes\n",
      "checking stdio.h presence... yes\n",
      "checking for stdio.h... yes\n",
      "checking stdarg.h usability... yes\n",
      "checking stdarg.h presence... yes\n",
      "checking for stdarg.h... yes\n",
      "checking errno.h usability... yes\n",
      "checking errno.h presence... yes\n",
      "checking for errno.h... yes\n",
      "checking ctype.h usability... yes\n",
      "checking ctype.h presence... yes\n",
      "checking for ctype.h... yes\n",
      "checking fcntl.h usability... yes\n",
      "checking fcntl.h presence... yes\n",
      "checking for fcntl.h... yes\n",
      "checking malloc.h usability... yes\n",
      "checking malloc.h presence... yes\n",
      "checking for malloc.h... yes\n",
      "checking for stdlib.h... (cached) yes\n",
      "checking for string.h... (cached) yes\n",
      "checking for strings.h... (cached) yes\n",
      "checking for unistd.h... (cached) yes\n",
      "checking for sys/stat.h... (cached) yes\n",
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      "checking getopt.h presence... yes\n",
      "checking for getopt.h... yes\n",
      "checking sys/time.h usability... yes\n",
      "checking sys/time.h presence... yes\n",
      "checking for sys/time.h... yes\n",
      "checking for vprintf... yes\n",
      "checking for _doprnt... no\n",
      "checking sys/resource.h usability... yes\n",
      "checking sys/resource.h presence... yes\n",
      "checking for sys/resource.h... yes\n",
      "checking for stdbool.h that conforms to C99... yes\n",
      "checking for _Bool... yes\n",
      "checking for strlcat... no\n",
      "checking for strerror... yes\n",
      "checking for snprintf... yes\n",
      "checking for strchr... yes\n",
      "checking for strrchr... yes\n",
      "checking for strcat... yes\n",
      "checking for strcpy... yes\n",
      "checking for strdup... yes\n",
      "checking for strcasecmp... yes\n",
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      "checking for strtoll... yes\n",
      "checking for strtoull... yes\n",
      "checking for strstr... yes\n",
      "checking for mkstemp... yes\n",
      "checking for rand... yes\n",
      "checking for memcmp... yes\n",
      "checking for getrlimit... yes\n",
      "checking for gettimeofday... yes\n",
      "checking for fsync... yes\n",
      "checking for MPI_Comm_f2c... no\n",
      "checking whether in-memory files are enabled... yes\n",
      "checking for memmove... yes\n",
      "checking for getpagesize... yes\n",
      "checking for sysconf... yes\n",
      "checking whether mmap is enabled for in-memory files... no\n",
      "checking for stdlib.h... (cached) yes\n",
      "checking for unistd.h... (cached) yes\n",
      "checking for sys/param.h... (cached) yes\n",
      "checking for getpagesize... (cached) yes\n",
      "checking for working mmap... yes\n",
      "checking for mremap... yes\n",
      "checking for size_t... yes\n",
      "checking for working alloca.h... yes\n",
      "checking for alloca... yes\n",
      "checking whether isnan is declared... yes\n",
      "checking whether isinf is declared... yes\n",
      "checking whether isfinite is declared... yes\n",
      "checking whether signbit is declared... yes\n",
      "checking for struct stat.st_blksize... yes\n",
      "checking for IEEE floating point format... yes\n",
      "checking for size_t... (cached) yes\n",
      "checking for off_t... yes\n",
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      "checking for ptrdiff_t... yes\n",
      "checking for uchar... no\n",
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      "checking for uint... yes\n",
      "checking for int64... no\n",
      "checking for uint64... no\n",
      "checking whether char is unsigned... no\n",
      "checking whether byte ordering is bigendian... no\n",
      "checking size of short... 2\n",
      "checking size of int... 4\n",
      "checking size of long... 8\n",
      "checking size of long long... 8\n",
      "checking size of float... 4\n",
      "checking size of double... 8\n",
      "checking size of off_t... 8\n",
      "checking size of size_t... 8\n",
      "checking size of unsigned long long... 8\n",
      "checking size of ushort... 2\n",
      "checking size of uint... 4\n",
      "checking size of unsigned long long... (cached) 8\n",
      "checking size of ushort... (cached) 2\n",
      "checking size of uint... (cached) 4\n",
      "checking size of ptrdiff_t... 8\n",
      "checking for library containing deflate... -lz\n",
      "checking for floor in -lm... yes\n",
      "checking for dlfcn.h... (cached) yes\n",
      "checking for dlopen in -ldl... yes\n",
      "checking for library containing H5Fflush... -lhdf5\n",
      "checking for library containing H5DSis_scale... -lhdf5_hl\n",
      "checking hdf5.h usability... yes\n",
      "checking hdf5.h presence... yes\n",
      "checking for hdf5.h... yes\n",
      "checking for H5Pget_fapl_mpiposix... no\n",
      "checking for H5Pget_fapl_mpio... no\n",
      "checking for H5Pset_deflate... yes\n",
      "checking for H5Z_SZIP... no\n",
      "checking for H5free_memory... yes\n",
      "checking whether parallel io is enabled in hdf5... no\n",
      "checking whether parallel I/O is enabled for netcdf-4... yes\n",
      "configure: WARNING: Parallel io disabled for netcdf-4 because hdf5 does not support\n",
      "checking whether parallel I/O for classic files is to be enabled... no\n",
      "checking for unsigned long long int... yes\n",
      "checking for long long int... no\n",
      "checking for unsigned long long int... (cached) yes\n",
      "checking what to call the output of the ftpbin target... binary-netcdf-4.4.0.tar  \n",
      "checking if libtool needs -no-undefined flag to build shared libraries... no\n",
      "checking value of LIBS... -lhdf5_hl -lhdf5 -ldl -lm -lz \n",
      "checking If compilation is for use with JNA... no\n",
      "configure: generating header files and makefiles\n",
      "checking that generated files are newer than configure... done\n",
      "configure: creating ./config.status\n",
      "config.status: creating Makefile\n",
      "config.status: creating nc-config\n",
      "config.status: creating netcdf.pc\n",
      "config.status: creating libnetcdf.settings\n",
      "config.status: creating postinstall.sh\n",
      "config.status: creating include/netcdf_meta.h\n",
      "config.status: creating include/Makefile\n",
      "config.status: creating h5_test/Makefile\n",
      "config.status: creating docs/Makefile\n",
      "config.status: creating docs/images/Makefile\n",
      "config.status: creating libsrc/Makefile\n",
      "config.status: creating libsrc4/Makefile\n",
      "config.status: creating libsrcp/Makefile\n",
      "config.status: creating nctest/Makefile\n",
      "config.status: creating nc_test4/Makefile\n",
      "config.status: creating nc_test/Makefile\n",
      "config.status: creating ncdump/Makefile\n",
      "config.status: creating ncgen3/Makefile\n",
      "config.status: creating ncgen/Makefile\n",
      "config.status: creating examples/Makefile\n",
      "config.status: creating examples/C/Makefile\n",
      "config.status: creating examples/CDL/Makefile\n",
      "config.status: creating oc2/Makefile\n",
      "config.status: creating libdap2/Makefile\n",
      "config.status: creating libdispatch/Makefile\n",
      "config.status: creating liblib/Makefile\n",
      "config.status: creating ncdump/cdl/Makefile\n",
      "config.status: creating ncdump/expected/Makefile\n",
      "config.status: creating ncdap_test/Makefile\n",
      "config.status: creating ncdap_test/testdata3/Makefile\n",
      "config.status: creating ncdap_test/expected3/Makefile\n",
      "config.status: creating ncdap_test/expected4/Makefile\n",
      "config.status: creating ncdap_test/expectremote3/Makefile\n",
      "config.status: creating ncdap_test/expectremote4/Makefile\n",
      "config.status: creating config.h\n",
      "config.status: executing depfiles commands\n",
      "config.status: executing libtool commands\n",
      "# NetCDF C Configuration Summary\n",
      "==============================\n",
      "\n",
      "# General\n",
      "-------\n",
      "NetCDF Version:\t\t4.4.0\n",
      "Configured On:\t\tMon May 23 00:42:26 CDT 2016\n",
      "Host System:\t\tx86_64-unknown-linux-gnu\n",
      "Build Directory: \t/gpfs/fs01/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work\n",
      "Install Prefix:         /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf\n",
      "\n",
      "# Compiling Options\n",
      "-----------------\n",
      "C Compiler:\t\t/bin/gcc\n",
      "CFLAGS:\t\t\t-g -O2\n",
      "CPPFLAGS:\t\t-I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include\n",
      "LDFLAGS:\t\t-L/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib\n",
      "AM_CFLAGS:\t\t\n",
      "AM_CPPFLAGS:\t\t\n",
      "AM_LDFLAGS:\t\t\n",
      "Shared Library:\t\tyes\n",
      "Static Library:\t\tyes\n",
      "Extra libraries:\t-lhdf5_hl -lhdf5 -ldl -lm -lz \n",
      "\n",
      "# Features\n",
      "--------\n",
      "NetCDF-2 API:\t\tyes\n",
      "HDF4 Support:\t\tno\n",
      "NetCDF-4 API:\t\tyes\n",
      "NC-4 Parallel Support:\tno\n",
      "PNetCDF Support:\tno\n",
      "DAP Support:\t\tno\n",
      "Diskless Support:\tyes\n",
      "MMap Support:\t\tno\n",
      "JNA Support:\t\tno\n"
     ]
    }
   ],
   "source": [
    "# Setup Configuration Info\n",
    "# http://www.unidata.ucar.edu/mailing_lists/archives/netcdfgroup/2011/msg00340.html\n",
    "# http://www.unidata.ucar.edu/software/netcdf/netcdf-4/newdocs/netcdf-install/Configure.html\n",
    "os.environ['HDF5_DIR']= hdf5Dir + \"/hdf5\"\n",
    "os.environ['CPPFLAGS']= \"-I\" + hdf5Dir + \"/hdf5/include\"\n",
    "os.environ['LDFLAGS']= \"-L\" + hdf5Dir + \"/hdf5/lib\"\n",
    "!$netcdfSrcDir/configure --prefix=$netcdfDir/netcdf --enable-netcdf-4"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Let's build netCDF4"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 18,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "make: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work'\n",
      "make  all-recursive\n",
      "make[1]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work'\n",
      "Making all in include\n",
      "make[2]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/include'\n",
      "make[2]: Nothing to be done for `all'.\n",
      "make[2]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/include'\n",
      "Making all in h5_test\n",
      "make[2]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/h5_test'\n",
      "make[2]: Nothing to be done for `all'.\n",
      "make[2]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/h5_test'\n",
      "Making all in libdispatch\n",
      "make[2]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/libdispatch'\n",
      "/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include    -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT libdispatch_la-dparallel.lo -MD -MP -MF .deps/libdispatch_la-dparallel.Tpo -c -o libdispatch_la-dparallel.lo `test -f 'dparallel.c' || echo '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/'`dparallel.c\n",
      "/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include    -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT libdispatch_la-dcopy.lo -MD -MP -MF .deps/libdispatch_la-dcopy.Tpo -c -o libdispatch_la-dcopy.lo `test -f 'dcopy.c' || echo '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/'`dcopy.c\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libdispatch_la-dcopy.lo -MD -MP -MF .deps/libdispatch_la-dcopy.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/dcopy.c  -fPIC -DPIC -o .libs/libdispatch_la-dcopy.o\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libdispatch_la-dparallel.lo -MD -MP -MF .deps/libdispatch_la-dparallel.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/dparallel.c  -fPIC -DPIC -o .libs/libdispatch_la-dparallel.o\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libdispatch_la-dparallel.lo -MD -MP -MF .deps/libdispatch_la-dparallel.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/dparallel.c -o libdispatch_la-dparallel.o >/dev/null 2>&1\n",
      "mv -f .deps/libdispatch_la-dparallel.Tpo .deps/libdispatch_la-dparallel.Plo\n",
      "/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include    -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT libdispatch_la-dfile.lo -MD -MP -MF .deps/libdispatch_la-dfile.Tpo -c -o libdispatch_la-dfile.lo `test -f 'dfile.c' || echo '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/'`dfile.c\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libdispatch_la-dcopy.lo -MD -MP -MF .deps/libdispatch_la-dcopy.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/dcopy.c -o libdispatch_la-dcopy.o >/dev/null 2>&1\n",
      "mv -f .deps/libdispatch_la-dcopy.Tpo .deps/libdispatch_la-dcopy.Plo\n",
      "/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include    -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT libdispatch_la-ddim.lo -MD -MP -MF .deps/libdispatch_la-ddim.Tpo -c -o libdispatch_la-ddim.lo `test -f 'ddim.c' || echo '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/'`ddim.c\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libdispatch_la-dfile.lo -MD -MP -MF .deps/libdispatch_la-dfile.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/dfile.c  -fPIC -DPIC -o .libs/libdispatch_la-dfile.o\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libdispatch_la-ddim.lo -MD -MP -MF .deps/libdispatch_la-ddim.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/ddim.c  -fPIC -DPIC -o .libs/libdispatch_la-ddim.o\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libdispatch_la-dfile.lo -MD -MP -MF .deps/libdispatch_la-dfile.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/dfile.c -o libdispatch_la-dfile.o >/dev/null 2>&1\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libdispatch_la-ddim.lo -MD -MP -MF .deps/libdispatch_la-ddim.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/ddim.c -o libdispatch_la-ddim.o >/dev/null 2>&1\n",
      "mv -f .deps/libdispatch_la-ddim.Tpo .deps/libdispatch_la-ddim.Plo\n",
      "/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include    -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT libdispatch_la-datt.lo -MD -MP -MF .deps/libdispatch_la-datt.Tpo -c -o libdispatch_la-datt.lo `test -f 'datt.c' || echo '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/'`datt.c\n",
      "mv -f .deps/libdispatch_la-dfile.Tpo .deps/libdispatch_la-dfile.Plo\n",
      "/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include    -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT libdispatch_la-dattinq.lo -MD -MP -MF .deps/libdispatch_la-dattinq.Tpo -c -o libdispatch_la-dattinq.lo `test -f 'dattinq.c' || echo '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/'`dattinq.c\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libdispatch_la-datt.lo -MD -MP -MF .deps/libdispatch_la-datt.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/datt.c  -fPIC -DPIC -o .libs/libdispatch_la-datt.o\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libdispatch_la-dattinq.lo -MD -MP -MF .deps/libdispatch_la-dattinq.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/dattinq.c  -fPIC -DPIC -o .libs/libdispatch_la-dattinq.o\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libdispatch_la-datt.lo -MD -MP -MF .deps/libdispatch_la-datt.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/datt.c -o libdispatch_la-datt.o >/dev/null 2>&1\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libdispatch_la-dattinq.lo -MD -MP -MF .deps/libdispatch_la-dattinq.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/dattinq.c -o libdispatch_la-dattinq.o >/dev/null 2>&1\n",
      "mv -f .deps/libdispatch_la-datt.Tpo .deps/libdispatch_la-datt.Plo\n",
      "/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include    -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT libdispatch_la-dattput.lo -MD -MP -MF .deps/libdispatch_la-dattput.Tpo -c -o libdispatch_la-dattput.lo `test -f 'dattput.c' || echo '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/'`dattput.c\n",
      "mv -f .deps/libdispatch_la-dattinq.Tpo .deps/libdispatch_la-dattinq.Plo\n",
      "/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include    -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT libdispatch_la-dattget.lo -MD -MP -MF .deps/libdispatch_la-dattget.Tpo -c -o libdispatch_la-dattget.lo `test -f 'dattget.c' || echo '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/'`dattget.c\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libdispatch_la-dattget.lo -MD -MP -MF .deps/libdispatch_la-dattget.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/dattget.c  -fPIC -DPIC -o .libs/libdispatch_la-dattget.o\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libdispatch_la-dattput.lo -MD -MP -MF .deps/libdispatch_la-dattput.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/dattput.c  -fPIC -DPIC -o .libs/libdispatch_la-dattput.o\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libdispatch_la-dattget.lo -MD -MP -MF .deps/libdispatch_la-dattget.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/dattget.c -o libdispatch_la-dattget.o >/dev/null 2>&1\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libdispatch_la-dattput.lo -MD -MP -MF .deps/libdispatch_la-dattput.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/dattput.c -o libdispatch_la-dattput.o >/dev/null 2>&1\n",
      "mv -f .deps/libdispatch_la-dattget.Tpo .deps/libdispatch_la-dattget.Plo\n",
      "/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include    -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT libdispatch_la-derror.lo -MD -MP -MF .deps/libdispatch_la-derror.Tpo -c -o libdispatch_la-derror.lo `test -f 'derror.c' || echo '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/'`derror.c\n",
      "mv -f .deps/libdispatch_la-dattput.Tpo .deps/libdispatch_la-dattput.Plo\n",
      "/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include    -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT libdispatch_la-dvar.lo -MD -MP -MF .deps/libdispatch_la-dvar.Tpo -c -o libdispatch_la-dvar.lo `test -f 'dvar.c' || echo '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/'`dvar.c\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libdispatch_la-derror.lo -MD -MP -MF .deps/libdispatch_la-derror.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/derror.c  -fPIC -DPIC -o .libs/libdispatch_la-derror.o\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libdispatch_la-dvar.lo -MD -MP -MF .deps/libdispatch_la-dvar.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/dvar.c  -fPIC -DPIC -o .libs/libdispatch_la-dvar.o\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libdispatch_la-derror.lo -MD -MP -MF .deps/libdispatch_la-derror.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/derror.c -o libdispatch_la-derror.o >/dev/null 2>&1\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libdispatch_la-dvar.lo -MD -MP -MF .deps/libdispatch_la-dvar.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/dvar.c -o libdispatch_la-dvar.o >/dev/null 2>&1\n",
      "mv -f .deps/libdispatch_la-derror.Tpo .deps/libdispatch_la-derror.Plo\n",
      "/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include    -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT libdispatch_la-dvarget.lo -MD -MP -MF .deps/libdispatch_la-dvarget.Tpo -c -o libdispatch_la-dvarget.lo `test -f 'dvarget.c' || echo '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/'`dvarget.c\n",
      "mv -f .deps/libdispatch_la-dvar.Tpo .deps/libdispatch_la-dvar.Plo\n",
      "/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include    -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT libdispatch_la-dvarput.lo -MD -MP -MF .deps/libdispatch_la-dvarput.Tpo -c -o libdispatch_la-dvarput.lo `test -f 'dvarput.c' || echo '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/'`dvarput.c\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libdispatch_la-dvarput.lo -MD -MP -MF .deps/libdispatch_la-dvarput.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/dvarput.c  -fPIC -DPIC -o .libs/libdispatch_la-dvarput.o\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libdispatch_la-dvarget.lo -MD -MP -MF .deps/libdispatch_la-dvarget.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/dvarget.c  -fPIC -DPIC -o .libs/libdispatch_la-dvarget.o\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libdispatch_la-dvarput.lo -MD -MP -MF .deps/libdispatch_la-dvarput.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/dvarput.c -o libdispatch_la-dvarput.o >/dev/null 2>&1\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libdispatch_la-dvarget.lo -MD -MP -MF .deps/libdispatch_la-dvarget.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/dvarget.c -o libdispatch_la-dvarget.o >/dev/null 2>&1\n",
      "mv -f .deps/libdispatch_la-dvarput.Tpo .deps/libdispatch_la-dvarput.Plo\n",
      "/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include    -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT libdispatch_la-dvarinq.lo -MD -MP -MF .deps/libdispatch_la-dvarinq.Tpo -c -o libdispatch_la-dvarinq.lo `test -f 'dvarinq.c' || echo '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/'`dvarinq.c\n",
      "mv -f .deps/libdispatch_la-dvarget.Tpo .deps/libdispatch_la-dvarget.Plo\n",
      "/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include    -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT libdispatch_la-ddispatch.lo -MD -MP -MF .deps/libdispatch_la-ddispatch.Tpo -c -o libdispatch_la-ddispatch.lo `test -f 'ddispatch.c' || echo '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/'`ddispatch.c\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libdispatch_la-ddispatch.lo -MD -MP -MF .deps/libdispatch_la-ddispatch.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/ddispatch.c  -fPIC -DPIC -o .libs/libdispatch_la-ddispatch.o\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libdispatch_la-dvarinq.lo -MD -MP -MF .deps/libdispatch_la-dvarinq.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/dvarinq.c  -fPIC -DPIC -o .libs/libdispatch_la-dvarinq.o\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libdispatch_la-ddispatch.lo -MD -MP -MF .deps/libdispatch_la-ddispatch.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/ddispatch.c -o libdispatch_la-ddispatch.o >/dev/null 2>&1\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libdispatch_la-dvarinq.lo -MD -MP -MF .deps/libdispatch_la-dvarinq.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/dvarinq.c -o libdispatch_la-dvarinq.o >/dev/null 2>&1\n",
      "mv -f .deps/libdispatch_la-ddispatch.Tpo .deps/libdispatch_la-ddispatch.Plo\n",
      "/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include    -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT libdispatch_la-nclog.lo -MD -MP -MF .deps/libdispatch_la-nclog.Tpo -c -o libdispatch_la-nclog.lo `test -f 'nclog.c' || echo '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/'`nclog.c\n",
      "mv -f .deps/libdispatch_la-dvarinq.Tpo .deps/libdispatch_la-dvarinq.Plo\n",
      "/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include    -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT libdispatch_la-dstring.lo -MD -MP -MF .deps/libdispatch_la-dstring.Tpo -c -o libdispatch_la-dstring.lo `test -f 'dstring.c' || echo '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/'`dstring.c\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libdispatch_la-nclog.lo -MD -MP -MF .deps/libdispatch_la-nclog.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/nclog.c  -fPIC -DPIC -o .libs/libdispatch_la-nclog.o\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libdispatch_la-dstring.lo -MD -MP -MF .deps/libdispatch_la-dstring.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/dstring.c  -fPIC -DPIC -o .libs/libdispatch_la-dstring.o\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libdispatch_la-nclog.lo -MD -MP -MF .deps/libdispatch_la-nclog.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/nclog.c -o libdispatch_la-nclog.o >/dev/null 2>&1\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libdispatch_la-dstring.lo -MD -MP -MF .deps/libdispatch_la-dstring.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/dstring.c -o libdispatch_la-dstring.o >/dev/null 2>&1\n",
      "mv -f .deps/libdispatch_la-nclog.Tpo .deps/libdispatch_la-nclog.Plo\n",
      "/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include    -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT libdispatch_la-dutf8proc.lo -MD -MP -MF .deps/libdispatch_la-dutf8proc.Tpo -c -o libdispatch_la-dutf8proc.lo `test -f 'dutf8proc.c' || echo '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/'`dutf8proc.c\n",
      "mv -f .deps/libdispatch_la-dstring.Tpo .deps/libdispatch_la-dstring.Plo\n",
      "/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include    -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT libdispatch_la-ncuri.lo -MD -MP -MF .deps/libdispatch_la-ncuri.Tpo -c -o libdispatch_la-ncuri.lo `test -f 'ncuri.c' || echo '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/'`ncuri.c\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libdispatch_la-ncuri.lo -MD -MP -MF .deps/libdispatch_la-ncuri.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/ncuri.c  -fPIC -DPIC -o .libs/libdispatch_la-ncuri.o\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libdispatch_la-dutf8proc.lo -MD -MP -MF .deps/libdispatch_la-dutf8proc.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/dutf8proc.c  -fPIC -DPIC -o .libs/libdispatch_la-dutf8proc.o\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libdispatch_la-ncuri.lo -MD -MP -MF .deps/libdispatch_la-ncuri.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/ncuri.c -o libdispatch_la-ncuri.o >/dev/null 2>&1\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libdispatch_la-dutf8proc.lo -MD -MP -MF .deps/libdispatch_la-dutf8proc.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/dutf8proc.c -o libdispatch_la-dutf8proc.o >/dev/null 2>&1\n",
      "mv -f .deps/libdispatch_la-ncuri.Tpo .deps/libdispatch_la-ncuri.Plo\n",
      "/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include    -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT libdispatch_la-nclist.lo -MD -MP -MF .deps/libdispatch_la-nclist.Tpo -c -o libdispatch_la-nclist.lo `test -f 'nclist.c' || echo '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/'`nclist.c\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libdispatch_la-nclist.lo -MD -MP -MF .deps/libdispatch_la-nclist.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/nclist.c  -fPIC -DPIC -o .libs/libdispatch_la-nclist.o\n",
      "mv -f .deps/libdispatch_la-dutf8proc.Tpo .deps/libdispatch_la-dutf8proc.Plo\n",
      "/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include    -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT libdispatch_la-ncbytes.lo -MD -MP -MF .deps/libdispatch_la-ncbytes.Tpo -c -o libdispatch_la-ncbytes.lo `test -f 'ncbytes.c' || echo '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/'`ncbytes.c\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libdispatch_la-nclist.lo -MD -MP -MF .deps/libdispatch_la-nclist.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/nclist.c -o libdispatch_la-nclist.o >/dev/null 2>&1\n",
      "mv -f .deps/libdispatch_la-nclist.Tpo .deps/libdispatch_la-nclist.Plo\n",
      "/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include    -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT libdispatch_la-nchashmap.lo -MD -MP -MF .deps/libdispatch_la-nchashmap.Tpo -c -o libdispatch_la-nchashmap.lo `test -f 'nchashmap.c' || echo '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/'`nchashmap.c\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libdispatch_la-nchashmap.lo -MD -MP -MF .deps/libdispatch_la-nchashmap.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/nchashmap.c  -fPIC -DPIC -o .libs/libdispatch_la-nchashmap.o\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libdispatch_la-ncbytes.lo -MD -MP -MF .deps/libdispatch_la-ncbytes.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/ncbytes.c  -fPIC -DPIC -o .libs/libdispatch_la-ncbytes.o\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libdispatch_la-ncbytes.lo -MD -MP -MF .deps/libdispatch_la-ncbytes.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/ncbytes.c -o libdispatch_la-ncbytes.o >/dev/null 2>&1\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libdispatch_la-nchashmap.lo -MD -MP -MF .deps/libdispatch_la-nchashmap.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/nchashmap.c -o libdispatch_la-nchashmap.o >/dev/null 2>&1\n",
      "mv -f .deps/libdispatch_la-ncbytes.Tpo .deps/libdispatch_la-ncbytes.Plo\n",
      "/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include    -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT libdispatch_la-nctime.lo -MD -MP -MF .deps/libdispatch_la-nctime.Tpo -c -o libdispatch_la-nctime.lo `test -f 'nctime.c' || echo '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/'`nctime.c\n",
      "mv -f .deps/libdispatch_la-nchashmap.Tpo .deps/libdispatch_la-nchashmap.Plo\n",
      "/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include    -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT libdispatch_la-dsubstrate.lo -MD -MP -MF .deps/libdispatch_la-dsubstrate.Tpo -c -o libdispatch_la-dsubstrate.lo `test -f 'dsubstrate.c' || echo '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/'`dsubstrate.c\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libdispatch_la-nctime.lo -MD -MP -MF .deps/libdispatch_la-nctime.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/nctime.c  -fPIC -DPIC -o .libs/libdispatch_la-nctime.o\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libdispatch_la-dsubstrate.lo -MD -MP -MF .deps/libdispatch_la-dsubstrate.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/dsubstrate.c  -fPIC -DPIC -o .libs/libdispatch_la-dsubstrate.o\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libdispatch_la-nctime.lo -MD -MP -MF .deps/libdispatch_la-nctime.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/nctime.c -o libdispatch_la-nctime.o >/dev/null 2>&1\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libdispatch_la-dsubstrate.lo -MD -MP -MF .deps/libdispatch_la-dsubstrate.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/dsubstrate.c -o libdispatch_la-dsubstrate.o >/dev/null 2>&1\n",
      "mv -f .deps/libdispatch_la-nctime.Tpo .deps/libdispatch_la-nctime.Plo\n",
      "/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include    -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT libdispatch_la-nc.lo -MD -MP -MF .deps/libdispatch_la-nc.Tpo -c -o libdispatch_la-nc.lo `test -f 'nc.c' || echo '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/'`nc.c\n",
      "mv -f .deps/libdispatch_la-dsubstrate.Tpo .deps/libdispatch_la-dsubstrate.Plo\n",
      "/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include    -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT libdispatch_la-nclistmgr.lo -MD -MP -MF .deps/libdispatch_la-nclistmgr.Tpo -c -o libdispatch_la-nclistmgr.lo `test -f 'nclistmgr.c' || echo '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/'`nclistmgr.c\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libdispatch_la-nclistmgr.lo -MD -MP -MF .deps/libdispatch_la-nclistmgr.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/nclistmgr.c  -fPIC -DPIC -o .libs/libdispatch_la-nclistmgr.o\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libdispatch_la-nc.lo -MD -MP -MF .deps/libdispatch_la-nc.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/nc.c  -fPIC -DPIC -o .libs/libdispatch_la-nc.o\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libdispatch_la-nclistmgr.lo -MD -MP -MF .deps/libdispatch_la-nclistmgr.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/nclistmgr.c -o libdispatch_la-nclistmgr.o >/dev/null 2>&1\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libdispatch_la-nc.lo -MD -MP -MF .deps/libdispatch_la-nc.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/nc.c -o libdispatch_la-nc.o >/dev/null 2>&1\n",
      "mv -f .deps/libdispatch_la-nclistmgr.Tpo .deps/libdispatch_la-nclistmgr.Plo\n",
      "/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include    -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT libdispatch_la-dgroup.lo -MD -MP -MF .deps/libdispatch_la-dgroup.Tpo -c -o libdispatch_la-dgroup.lo `test -f 'dgroup.c' || echo '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/'`dgroup.c\n",
      "mv -f .deps/libdispatch_la-nc.Tpo .deps/libdispatch_la-nc.Plo\n",
      "/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include    -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT libdispatch_la-dvlen.lo -MD -MP -MF .deps/libdispatch_la-dvlen.Tpo -c -o libdispatch_la-dvlen.lo `test -f 'dvlen.c' || echo '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/'`dvlen.c\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libdispatch_la-dvlen.lo -MD -MP -MF .deps/libdispatch_la-dvlen.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/dvlen.c  -fPIC -DPIC -o .libs/libdispatch_la-dvlen.o\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libdispatch_la-dgroup.lo -MD -MP -MF .deps/libdispatch_la-dgroup.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/dgroup.c  -fPIC -DPIC -o .libs/libdispatch_la-dgroup.o\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libdispatch_la-dvlen.lo -MD -MP -MF .deps/libdispatch_la-dvlen.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/dvlen.c -o libdispatch_la-dvlen.o >/dev/null 2>&1\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libdispatch_la-dgroup.lo -MD -MP -MF .deps/libdispatch_la-dgroup.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/dgroup.c -o libdispatch_la-dgroup.o >/dev/null 2>&1\n",
      "mv -f .deps/libdispatch_la-dvlen.Tpo .deps/libdispatch_la-dvlen.Plo\n",
      "/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include    -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT libdispatch_la-dcompound.lo -MD -MP -MF .deps/libdispatch_la-dcompound.Tpo -c -o libdispatch_la-dcompound.lo `test -f 'dcompound.c' || echo '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/'`dcompound.c\n",
      "mv -f .deps/libdispatch_la-dgroup.Tpo .deps/libdispatch_la-dgroup.Plo\n",
      "/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include    -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT libdispatch_la-dtype.lo -MD -MP -MF .deps/libdispatch_la-dtype.Tpo -c -o libdispatch_la-dtype.lo `test -f 'dtype.c' || echo '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/'`dtype.c\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libdispatch_la-dtype.lo -MD -MP -MF .deps/libdispatch_la-dtype.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/dtype.c  -fPIC -DPIC -o .libs/libdispatch_la-dtype.o\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libdispatch_la-dcompound.lo -MD -MP -MF .deps/libdispatch_la-dcompound.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/dcompound.c  -fPIC -DPIC -o .libs/libdispatch_la-dcompound.o\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libdispatch_la-dtype.lo -MD -MP -MF .deps/libdispatch_la-dtype.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/dtype.c -o libdispatch_la-dtype.o >/dev/null 2>&1\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libdispatch_la-dcompound.lo -MD -MP -MF .deps/libdispatch_la-dcompound.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/dcompound.c -o libdispatch_la-dcompound.o >/dev/null 2>&1\n",
      "mv -f .deps/libdispatch_la-dtype.Tpo .deps/libdispatch_la-dtype.Plo\n",
      "/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include    -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT libdispatch_la-denum.lo -MD -MP -MF .deps/libdispatch_la-denum.Tpo -c -o libdispatch_la-denum.lo `test -f 'denum.c' || echo '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/'`denum.c\n",
      "mv -f .deps/libdispatch_la-dcompound.Tpo .deps/libdispatch_la-dcompound.Plo\n",
      "/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include    -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT libdispatch_la-dopaque.lo -MD -MP -MF .deps/libdispatch_la-dopaque.Tpo -c -o libdispatch_la-dopaque.lo `test -f 'dopaque.c' || echo '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/'`dopaque.c\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libdispatch_la-dopaque.lo -MD -MP -MF .deps/libdispatch_la-dopaque.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/dopaque.c  -fPIC -DPIC -o .libs/libdispatch_la-dopaque.o\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libdispatch_la-denum.lo -MD -MP -MF .deps/libdispatch_la-denum.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/denum.c  -fPIC -DPIC -o .libs/libdispatch_la-denum.o\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libdispatch_la-dopaque.lo -MD -MP -MF .deps/libdispatch_la-dopaque.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/dopaque.c -o libdispatch_la-dopaque.o >/dev/null 2>&1\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libdispatch_la-denum.lo -MD -MP -MF .deps/libdispatch_la-denum.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/denum.c -o libdispatch_la-denum.o >/dev/null 2>&1\n",
      "mv -f .deps/libdispatch_la-dopaque.Tpo .deps/libdispatch_la-dopaque.Plo\n",
      "/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include    -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT libdispatch_la-ncaux.lo -MD -MP -MF .deps/libdispatch_la-ncaux.Tpo -c -o libdispatch_la-ncaux.lo `test -f 'ncaux.c' || echo '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/'`ncaux.c\n",
      "mv -f .deps/libdispatch_la-denum.Tpo .deps/libdispatch_la-denum.Plo\n",
      "/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include   -DDLL_EXPORT -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT libnetcdf2_la-dv2i.lo -MD -MP -MF .deps/libnetcdf2_la-dv2i.Tpo -c -o libnetcdf2_la-dv2i.lo `test -f 'dv2i.c' || echo '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/'`dv2i.c\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libdispatch_la-ncaux.lo -MD -MP -MF .deps/libdispatch_la-ncaux.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/ncaux.c  -fPIC -DPIC -o .libs/libdispatch_la-ncaux.o\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -DDLL_EXPORT -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libnetcdf2_la-dv2i.lo -MD -MP -MF .deps/libnetcdf2_la-dv2i.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/dv2i.c  -fPIC -DPIC -o .libs/libnetcdf2_la-dv2i.o\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libdispatch_la-ncaux.lo -MD -MP -MF .deps/libdispatch_la-ncaux.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/ncaux.c -o libdispatch_la-ncaux.o >/dev/null 2>&1\n",
      "mv -f .deps/libdispatch_la-ncaux.Tpo .deps/libdispatch_la-ncaux.Plo\n",
      "/bin/sh ../libtool  --tag=CC   --mode=link gcc  -g -O2  -L/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib -o libdispatch.la  libdispatch_la-dparallel.lo libdispatch_la-dcopy.lo libdispatch_la-dfile.lo libdispatch_la-ddim.lo libdispatch_la-datt.lo libdispatch_la-dattinq.lo libdispatch_la-dattput.lo libdispatch_la-dattget.lo libdispatch_la-derror.lo libdispatch_la-dvar.lo libdispatch_la-dvarget.lo libdispatch_la-dvarput.lo libdispatch_la-dvarinq.lo libdispatch_la-ddispatch.lo libdispatch_la-nclog.lo libdispatch_la-dstring.lo libdispatch_la-dutf8proc.lo libdispatch_la-ncuri.lo libdispatch_la-nclist.lo libdispatch_la-ncbytes.lo libdispatch_la-nchashmap.lo libdispatch_la-nctime.lo libdispatch_la-dsubstrate.lo libdispatch_la-nc.lo libdispatch_la-nclistmgr.lo libdispatch_la-dgroup.lo libdispatch_la-dvlen.lo libdispatch_la-dcompound.lo libdispatch_la-dtype.lo libdispatch_la-denum.lo libdispatch_la-dopaque.lo libdispatch_la-ncaux.lo  -lhdf5_hl -lhdf5 -ldl -lm -lz \n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -DDLL_EXPORT -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libnetcdf2_la-dv2i.lo -MD -MP -MF .deps/libnetcdf2_la-dv2i.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libdispatch/dv2i.c -o libnetcdf2_la-dv2i.o >/dev/null 2>&1\n",
      "mv -f .deps/libnetcdf2_la-dv2i.Tpo .deps/libnetcdf2_la-dv2i.Plo\n",
      "/bin/sh ../libtool  --tag=CC   --mode=link gcc  -g -O2  -L/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib -o libnetcdf2.la  libnetcdf2_la-dv2i.lo  -lhdf5_hl -lhdf5 -ldl -lm -lz \n",
      "libtool: link: ar cru .libs/libdispatch.a .libs/libdispatch_la-dparallel.o .libs/libdispatch_la-dcopy.o .libs/libdispatch_la-dfile.o .libs/libdispatch_la-ddim.o .libs/libdispatch_la-datt.o .libs/libdispatch_la-dattinq.o .libs/libdispatch_la-dattput.o .libs/libdispatch_la-dattget.o .libs/libdispatch_la-derror.o .libs/libdispatch_la-dvar.o .libs/libdispatch_la-dvarget.o .libs/libdispatch_la-dvarput.o .libs/libdispatch_la-dvarinq.o .libs/libdispatch_la-ddispatch.o .libs/libdispatch_la-nclog.o .libs/libdispatch_la-dstring.o .libs/libdispatch_la-dutf8proc.o .libs/libdispatch_la-ncuri.o .libs/libdispatch_la-nclist.o .libs/libdispatch_la-ncbytes.o .libs/libdispatch_la-nchashmap.o .libs/libdispatch_la-nctime.o .libs/libdispatch_la-dsubstrate.o .libs/libdispatch_la-nc.o .libs/libdispatch_la-nclistmgr.o .libs/libdispatch_la-dgroup.o .libs/libdispatch_la-dvlen.o .libs/libdispatch_la-dcompound.o .libs/libdispatch_la-dtype.o .libs/libdispatch_la-denum.o .libs/libdispatch_la-dopaque.o .libs/libdispatch_la-ncaux.o \n",
      "libtool: link: ranlib .libs/libdispatch.a\n",
      "libtool: link: ( cd \".libs\" && rm -f \"libdispatch.la\" && ln -s \"../libdispatch.la\" \"libdispatch.la\" )\n",
      "libtool: link: ar cru .libs/libnetcdf2.a .libs/libnetcdf2_la-dv2i.o \n",
      "libtool: link: ranlib .libs/libnetcdf2.a\n",
      "libtool: link: ( cd \".libs\" && rm -f \"libnetcdf2.la\" && ln -s \"../libnetcdf2.la\" \"libnetcdf2.la\" )\n",
      "make[2]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/libdispatch'\n",
      "Making all in libsrc\n",
      "make[2]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/libsrc'\n",
      "/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include    -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT libnetcdf3_la-v1hpg.lo -MD -MP -MF .deps/libnetcdf3_la-v1hpg.Tpo -c -o libnetcdf3_la-v1hpg.lo `test -f 'v1hpg.c' || echo '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc/'`v1hpg.c\n",
      "/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include    -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT libnetcdf3_la-putget.lo -MD -MP -MF .deps/libnetcdf3_la-putget.Tpo -c -o libnetcdf3_la-putget.lo `test -f 'putget.c' || echo '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc/'`putget.c\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libnetcdf3_la-putget.lo -MD -MP -MF .deps/libnetcdf3_la-putget.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc/putget.c  -fPIC -DPIC -o .libs/libnetcdf3_la-putget.o\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libnetcdf3_la-v1hpg.lo -MD -MP -MF .deps/libnetcdf3_la-v1hpg.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc/v1hpg.c  -fPIC -DPIC -o .libs/libnetcdf3_la-v1hpg.o\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libnetcdf3_la-v1hpg.lo -MD -MP -MF .deps/libnetcdf3_la-v1hpg.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc/v1hpg.c -o libnetcdf3_la-v1hpg.o >/dev/null 2>&1\n",
      "mv -f .deps/libnetcdf3_la-v1hpg.Tpo .deps/libnetcdf3_la-v1hpg.Plo\n",
      "/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include    -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT libnetcdf3_la-attr.lo -MD -MP -MF .deps/libnetcdf3_la-attr.Tpo -c -o libnetcdf3_la-attr.lo `test -f 'attr.c' || echo '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc/'`attr.c\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libnetcdf3_la-attr.lo -MD -MP -MF .deps/libnetcdf3_la-attr.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc/attr.c  -fPIC -DPIC -o .libs/libnetcdf3_la-attr.o\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libnetcdf3_la-attr.lo -MD -MP -MF .deps/libnetcdf3_la-attr.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc/attr.c -o libnetcdf3_la-attr.o >/dev/null 2>&1\n",
      "mv -f .deps/libnetcdf3_la-attr.Tpo .deps/libnetcdf3_la-attr.Plo\n",
      "/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include    -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT libnetcdf3_la-nc3dispatch.lo -MD -MP -MF .deps/libnetcdf3_la-nc3dispatch.Tpo -c -o libnetcdf3_la-nc3dispatch.lo `test -f 'nc3dispatch.c' || echo '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc/'`nc3dispatch.c\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libnetcdf3_la-nc3dispatch.lo -MD -MP -MF .deps/libnetcdf3_la-nc3dispatch.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc/nc3dispatch.c  -fPIC -DPIC -o .libs/libnetcdf3_la-nc3dispatch.o\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libnetcdf3_la-nc3dispatch.lo -MD -MP -MF .deps/libnetcdf3_la-nc3dispatch.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc/nc3dispatch.c -o libnetcdf3_la-nc3dispatch.o >/dev/null 2>&1\n",
      "mv -f .deps/libnetcdf3_la-nc3dispatch.Tpo .deps/libnetcdf3_la-nc3dispatch.Plo\n",
      "/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include    -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT libnetcdf3_la-nc3internal.lo -MD -MP -MF .deps/libnetcdf3_la-nc3internal.Tpo -c -o libnetcdf3_la-nc3internal.lo `test -f 'nc3internal.c' || echo '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc/'`nc3internal.c\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libnetcdf3_la-putget.lo -MD -MP -MF .deps/libnetcdf3_la-putget.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc/putget.c -o libnetcdf3_la-putget.o >/dev/null 2>&1\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libnetcdf3_la-nc3internal.lo -MD -MP -MF .deps/libnetcdf3_la-nc3internal.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc/nc3internal.c  -fPIC -DPIC -o .libs/libnetcdf3_la-nc3internal.o\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libnetcdf3_la-nc3internal.lo -MD -MP -MF .deps/libnetcdf3_la-nc3internal.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc/nc3internal.c -o libnetcdf3_la-nc3internal.o >/dev/null 2>&1\n",
      "mv -f .deps/libnetcdf3_la-nc3internal.Tpo .deps/libnetcdf3_la-nc3internal.Plo\n",
      "/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include    -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT libnetcdf3_la-var.lo -MD -MP -MF .deps/libnetcdf3_la-var.Tpo -c -o libnetcdf3_la-var.lo `test -f 'var.c' || echo '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc/'`var.c\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libnetcdf3_la-var.lo -MD -MP -MF .deps/libnetcdf3_la-var.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc/var.c  -fPIC -DPIC -o .libs/libnetcdf3_la-var.o\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libnetcdf3_la-var.lo -MD -MP -MF .deps/libnetcdf3_la-var.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc/var.c -o libnetcdf3_la-var.o >/dev/null 2>&1\n",
      "mv -f .deps/libnetcdf3_la-var.Tpo .deps/libnetcdf3_la-var.Plo\n",
      "/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include    -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT libnetcdf3_la-dim.lo -MD -MP -MF .deps/libnetcdf3_la-dim.Tpo -c -o libnetcdf3_la-dim.lo `test -f 'dim.c' || echo '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc/'`dim.c\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libnetcdf3_la-dim.lo -MD -MP -MF .deps/libnetcdf3_la-dim.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc/dim.c  -fPIC -DPIC -o .libs/libnetcdf3_la-dim.o\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libnetcdf3_la-dim.lo -MD -MP -MF .deps/libnetcdf3_la-dim.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc/dim.c -o libnetcdf3_la-dim.o >/dev/null 2>&1\n",
      "mv -f .deps/libnetcdf3_la-putget.Tpo .deps/libnetcdf3_la-putget.Plo\n",
      "/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include    -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT libnetcdf3_la-ncx.lo -MD -MP -MF .deps/libnetcdf3_la-ncx.Tpo -c -o libnetcdf3_la-ncx.lo `test -f 'ncx.c' || echo '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc/'`ncx.c\n",
      "mv -f .deps/libnetcdf3_la-dim.Tpo .deps/libnetcdf3_la-dim.Plo\n",
      "/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include    -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT libnetcdf3_la-lookup3.lo -MD -MP -MF .deps/libnetcdf3_la-lookup3.Tpo -c -o libnetcdf3_la-lookup3.lo `test -f 'lookup3.c' || echo '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc/'`lookup3.c\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libnetcdf3_la-ncx.lo -MD -MP -MF .deps/libnetcdf3_la-ncx.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc/ncx.c  -fPIC -DPIC -o .libs/libnetcdf3_la-ncx.o\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libnetcdf3_la-lookup3.lo -MD -MP -MF .deps/libnetcdf3_la-lookup3.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc/lookup3.c  -fPIC -DPIC -o .libs/libnetcdf3_la-lookup3.o\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libnetcdf3_la-lookup3.lo -MD -MP -MF .deps/libnetcdf3_la-lookup3.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc/lookup3.c -o libnetcdf3_la-lookup3.o >/dev/null 2>&1\n",
      "mv -f .deps/libnetcdf3_la-lookup3.Tpo .deps/libnetcdf3_la-lookup3.Plo\n",
      "/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include    -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT libnetcdf3_la-ncio.lo -MD -MP -MF .deps/libnetcdf3_la-ncio.Tpo -c -o libnetcdf3_la-ncio.lo `test -f 'ncio.c' || echo '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc/'`ncio.c\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libnetcdf3_la-ncio.lo -MD -MP -MF .deps/libnetcdf3_la-ncio.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc/ncio.c  -fPIC -DPIC -o .libs/libnetcdf3_la-ncio.o\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libnetcdf3_la-ncio.lo -MD -MP -MF .deps/libnetcdf3_la-ncio.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc/ncio.c -o libnetcdf3_la-ncio.o >/dev/null 2>&1\n",
      "mv -f .deps/libnetcdf3_la-ncio.Tpo .deps/libnetcdf3_la-ncio.Plo\n",
      "/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include    -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT libnetcdf3_la-memio.lo -MD -MP -MF .deps/libnetcdf3_la-memio.Tpo -c -o libnetcdf3_la-memio.lo `test -f 'memio.c' || echo '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc/'`memio.c\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libnetcdf3_la-memio.lo -MD -MP -MF .deps/libnetcdf3_la-memio.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc/memio.c  -fPIC -DPIC -o .libs/libnetcdf3_la-memio.o\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libnetcdf3_la-memio.lo -MD -MP -MF .deps/libnetcdf3_la-memio.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc/memio.c -o libnetcdf3_la-memio.o >/dev/null 2>&1\n",
      "mv -f .deps/libnetcdf3_la-memio.Tpo .deps/libnetcdf3_la-memio.Plo\n",
      "/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include    -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT libnetcdf3_la-posixio.lo -MD -MP -MF .deps/libnetcdf3_la-posixio.Tpo -c -o libnetcdf3_la-posixio.lo `test -f 'posixio.c' || echo '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc/'`posixio.c\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libnetcdf3_la-posixio.lo -MD -MP -MF .deps/libnetcdf3_la-posixio.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc/posixio.c  -fPIC -DPIC -o .libs/libnetcdf3_la-posixio.o\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libnetcdf3_la-ncx.lo -MD -MP -MF .deps/libnetcdf3_la-ncx.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc/ncx.c -o libnetcdf3_la-ncx.o >/dev/null 2>&1\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libnetcdf3_la-posixio.lo -MD -MP -MF .deps/libnetcdf3_la-posixio.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc/posixio.c -o libnetcdf3_la-posixio.o >/dev/null 2>&1\n",
      "mv -f .deps/libnetcdf3_la-posixio.Tpo .deps/libnetcdf3_la-posixio.Plo\n",
      "m4  -DAPI=C -DNETCDF4=TRUE   /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/docs/netcdf.m4 >netcdf.3  || rm netcdf.3\n",
      "mv -f .deps/libnetcdf3_la-ncx.Tpo .deps/libnetcdf3_la-ncx.Plo\n",
      "/bin/sh ../libtool  --tag=CC   --mode=link gcc  -g -O2  -L/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib -o libnetcdf3.la  libnetcdf3_la-v1hpg.lo libnetcdf3_la-putget.lo libnetcdf3_la-attr.lo libnetcdf3_la-nc3dispatch.lo libnetcdf3_la-nc3internal.lo libnetcdf3_la-var.lo libnetcdf3_la-dim.lo libnetcdf3_la-ncx.lo libnetcdf3_la-lookup3.lo libnetcdf3_la-ncio.lo libnetcdf3_la-memio.lo    libnetcdf3_la-posixio.lo  -lhdf5_hl -lhdf5 -ldl -lm -lz \n",
      "libtool: link: ar cru .libs/libnetcdf3.a .libs/libnetcdf3_la-v1hpg.o .libs/libnetcdf3_la-putget.o .libs/libnetcdf3_la-attr.o .libs/libnetcdf3_la-nc3dispatch.o .libs/libnetcdf3_la-nc3internal.o .libs/libnetcdf3_la-var.o .libs/libnetcdf3_la-dim.o .libs/libnetcdf3_la-ncx.o .libs/libnetcdf3_la-lookup3.o .libs/libnetcdf3_la-ncio.o .libs/libnetcdf3_la-memio.o .libs/libnetcdf3_la-posixio.o \n",
      "libtool: link: ranlib .libs/libnetcdf3.a\n",
      "libtool: link: ( cd \".libs\" && rm -f \"libnetcdf3.la\" && ln -s \"../libnetcdf3.la\" \"libnetcdf3.la\" )\n",
      "make[2]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/libsrc'\n",
      "Making all in libsrc4\n",
      "make[2]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/libsrc4'\n",
      "/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc4 -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include    -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT libnetcdf4_la-nc4dispatch.lo -MD -MP -MF .deps/libnetcdf4_la-nc4dispatch.Tpo -c -o libnetcdf4_la-nc4dispatch.lo `test -f 'nc4dispatch.c' || echo '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc4/'`nc4dispatch.c\n",
      "/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc4 -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include    -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT libnetcdf4_la-nc4attr.lo -MD -MP -MF .deps/libnetcdf4_la-nc4attr.Tpo -c -o libnetcdf4_la-nc4attr.lo `test -f 'nc4attr.c' || echo '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc4/'`nc4attr.c\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc4 -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libnetcdf4_la-nc4attr.lo -MD -MP -MF .deps/libnetcdf4_la-nc4attr.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc4/nc4attr.c  -fPIC -DPIC -o .libs/libnetcdf4_la-nc4attr.o\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc4 -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libnetcdf4_la-nc4dispatch.lo -MD -MP -MF .deps/libnetcdf4_la-nc4dispatch.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc4/nc4dispatch.c  -fPIC -DPIC -o .libs/libnetcdf4_la-nc4dispatch.o\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc4 -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libnetcdf4_la-nc4dispatch.lo -MD -MP -MF .deps/libnetcdf4_la-nc4dispatch.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc4/nc4dispatch.c -o libnetcdf4_la-nc4dispatch.o >/dev/null 2>&1\n",
      "mv -f .deps/libnetcdf4_la-nc4dispatch.Tpo .deps/libnetcdf4_la-nc4dispatch.Plo\n",
      "/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc4 -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include    -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT libnetcdf4_la-nc4dim.lo -MD -MP -MF .deps/libnetcdf4_la-nc4dim.Tpo -c -o libnetcdf4_la-nc4dim.lo `test -f 'nc4dim.c' || echo '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc4/'`nc4dim.c\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc4 -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libnetcdf4_la-nc4attr.lo -MD -MP -MF .deps/libnetcdf4_la-nc4attr.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc4/nc4attr.c -o libnetcdf4_la-nc4attr.o >/dev/null 2>&1\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc4 -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libnetcdf4_la-nc4dim.lo -MD -MP -MF .deps/libnetcdf4_la-nc4dim.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc4/nc4dim.c  -fPIC -DPIC -o .libs/libnetcdf4_la-nc4dim.o\n",
      "mv -f .deps/libnetcdf4_la-nc4attr.Tpo .deps/libnetcdf4_la-nc4attr.Plo\n",
      "/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc4 -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include    -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT libnetcdf4_la-nc4file.lo -MD -MP -MF .deps/libnetcdf4_la-nc4file.Tpo -c -o libnetcdf4_la-nc4file.lo `test -f 'nc4file.c' || echo '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc4/'`nc4file.c\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc4 -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libnetcdf4_la-nc4dim.lo -MD -MP -MF .deps/libnetcdf4_la-nc4dim.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc4/nc4dim.c -o libnetcdf4_la-nc4dim.o >/dev/null 2>&1\n",
      "mv -f .deps/libnetcdf4_la-nc4dim.Tpo .deps/libnetcdf4_la-nc4dim.Plo\n",
      "/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc4 -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include    -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT libnetcdf4_la-nc4grp.lo -MD -MP -MF .deps/libnetcdf4_la-nc4grp.Tpo -c -o libnetcdf4_la-nc4grp.lo `test -f 'nc4grp.c' || echo '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc4/'`nc4grp.c\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc4 -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libnetcdf4_la-nc4file.lo -MD -MP -MF .deps/libnetcdf4_la-nc4file.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc4/nc4file.c  -fPIC -DPIC -o .libs/libnetcdf4_la-nc4file.o\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc4 -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libnetcdf4_la-nc4grp.lo -MD -MP -MF .deps/libnetcdf4_la-nc4grp.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc4/nc4grp.c  -fPIC -DPIC -o .libs/libnetcdf4_la-nc4grp.o\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc4 -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libnetcdf4_la-nc4grp.lo -MD -MP -MF .deps/libnetcdf4_la-nc4grp.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc4/nc4grp.c -o libnetcdf4_la-nc4grp.o >/dev/null 2>&1\n",
      "mv -f .deps/libnetcdf4_la-nc4grp.Tpo .deps/libnetcdf4_la-nc4grp.Plo\n",
      "/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc4 -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include    -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT libnetcdf4_la-nc4hdf.lo -MD -MP -MF .deps/libnetcdf4_la-nc4hdf.Tpo -c -o libnetcdf4_la-nc4hdf.lo `test -f 'nc4hdf.c' || echo '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc4/'`nc4hdf.c\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc4 -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libnetcdf4_la-nc4file.lo -MD -MP -MF .deps/libnetcdf4_la-nc4file.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc4/nc4file.c -o libnetcdf4_la-nc4file.o >/dev/null 2>&1\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc4 -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libnetcdf4_la-nc4hdf.lo -MD -MP -MF .deps/libnetcdf4_la-nc4hdf.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc4/nc4hdf.c  -fPIC -DPIC -o .libs/libnetcdf4_la-nc4hdf.o\n",
      "mv -f .deps/libnetcdf4_la-nc4file.Tpo .deps/libnetcdf4_la-nc4file.Plo\n",
      "/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc4 -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include    -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT libnetcdf4_la-nc4internal.lo -MD -MP -MF .deps/libnetcdf4_la-nc4internal.Tpo -c -o libnetcdf4_la-nc4internal.lo `test -f 'nc4internal.c' || echo '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc4/'`nc4internal.c\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc4 -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libnetcdf4_la-nc4internal.lo -MD -MP -MF .deps/libnetcdf4_la-nc4internal.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc4/nc4internal.c  -fPIC -DPIC -o .libs/libnetcdf4_la-nc4internal.o\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc4 -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libnetcdf4_la-nc4internal.lo -MD -MP -MF .deps/libnetcdf4_la-nc4internal.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc4/nc4internal.c -o libnetcdf4_la-nc4internal.o >/dev/null 2>&1\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc4 -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libnetcdf4_la-nc4hdf.lo -MD -MP -MF .deps/libnetcdf4_la-nc4hdf.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc4/nc4hdf.c -o libnetcdf4_la-nc4hdf.o >/dev/null 2>&1\n",
      "mv -f .deps/libnetcdf4_la-nc4internal.Tpo .deps/libnetcdf4_la-nc4internal.Plo\n",
      "/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc4 -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include    -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT libnetcdf4_la-nc4type.lo -MD -MP -MF .deps/libnetcdf4_la-nc4type.Tpo -c -o libnetcdf4_la-nc4type.lo `test -f 'nc4type.c' || echo '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc4/'`nc4type.c\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc4 -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libnetcdf4_la-nc4type.lo -MD -MP -MF .deps/libnetcdf4_la-nc4type.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc4/nc4type.c  -fPIC -DPIC -o .libs/libnetcdf4_la-nc4type.o\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc4 -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libnetcdf4_la-nc4type.lo -MD -MP -MF .deps/libnetcdf4_la-nc4type.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc4/nc4type.c -o libnetcdf4_la-nc4type.o >/dev/null 2>&1\n",
      "mv -f .deps/libnetcdf4_la-nc4type.Tpo .deps/libnetcdf4_la-nc4type.Plo\n",
      "/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc4 -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include    -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT libnetcdf4_la-nc4var.lo -MD -MP -MF .deps/libnetcdf4_la-nc4var.Tpo -c -o libnetcdf4_la-nc4var.lo `test -f 'nc4var.c' || echo '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc4/'`nc4var.c\n",
      "mv -f .deps/libnetcdf4_la-nc4hdf.Tpo .deps/libnetcdf4_la-nc4hdf.Plo\n",
      "/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc4 -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include    -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT libnetcdf4_la-ncfunc.lo -MD -MP -MF .deps/libnetcdf4_la-ncfunc.Tpo -c -o libnetcdf4_la-ncfunc.lo `test -f 'ncfunc.c' || echo '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc4/'`ncfunc.c\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc4 -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libnetcdf4_la-nc4var.lo -MD -MP -MF .deps/libnetcdf4_la-nc4var.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc4/nc4var.c  -fPIC -DPIC -o .libs/libnetcdf4_la-nc4var.o\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc4 -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libnetcdf4_la-nc4var.lo -MD -MP -MF .deps/libnetcdf4_la-nc4var.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc4/nc4var.c -o libnetcdf4_la-nc4var.o >/dev/null 2>&1\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc4 -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libnetcdf4_la-ncfunc.lo -MD -MP -MF .deps/libnetcdf4_la-ncfunc.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc4/ncfunc.c  -fPIC -DPIC -o .libs/libnetcdf4_la-ncfunc.o\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc4 -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libnetcdf4_la-ncfunc.lo -MD -MP -MF .deps/libnetcdf4_la-ncfunc.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc4/ncfunc.c -o libnetcdf4_la-ncfunc.o >/dev/null 2>&1\n",
      "mv -f .deps/libnetcdf4_la-ncfunc.Tpo .deps/libnetcdf4_la-ncfunc.Plo\n",
      "/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc4 -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include    -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT libnetcdf4_la-error4.lo -MD -MP -MF .deps/libnetcdf4_la-error4.Tpo -c -o libnetcdf4_la-error4.lo `test -f 'error4.c' || echo '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc4/'`error4.c\n",
      "mv -f .deps/libnetcdf4_la-nc4var.Tpo .deps/libnetcdf4_la-nc4var.Plo\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc4 -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libnetcdf4_la-error4.lo -MD -MP -MF .deps/libnetcdf4_la-error4.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc4/error4.c  -fPIC -DPIC -o .libs/libnetcdf4_la-error4.o\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc4 -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libnetcdf4_la-error4.lo -MD -MP -MF .deps/libnetcdf4_la-error4.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc4/error4.c -o libnetcdf4_la-error4.o >/dev/null 2>&1\n",
      "mv -f .deps/libnetcdf4_la-error4.Tpo .deps/libnetcdf4_la-error4.Plo\n",
      "/bin/sh ../libtool  --tag=CC   --mode=link gcc  -g -O2  -L/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib -o libnetcdf4.la  libnetcdf4_la-nc4dispatch.lo libnetcdf4_la-nc4attr.lo libnetcdf4_la-nc4dim.lo libnetcdf4_la-nc4file.lo libnetcdf4_la-nc4grp.lo libnetcdf4_la-nc4hdf.lo libnetcdf4_la-nc4internal.lo libnetcdf4_la-nc4type.lo libnetcdf4_la-nc4var.lo libnetcdf4_la-ncfunc.lo libnetcdf4_la-error4.lo  -lhdf5_hl -lhdf5 -ldl -lm -lz \n",
      "libtool: link: ar cru .libs/libnetcdf4.a .libs/libnetcdf4_la-nc4dispatch.o .libs/libnetcdf4_la-nc4attr.o .libs/libnetcdf4_la-nc4dim.o .libs/libnetcdf4_la-nc4file.o .libs/libnetcdf4_la-nc4grp.o .libs/libnetcdf4_la-nc4hdf.o .libs/libnetcdf4_la-nc4internal.o .libs/libnetcdf4_la-nc4type.o .libs/libnetcdf4_la-nc4var.o .libs/libnetcdf4_la-ncfunc.o .libs/libnetcdf4_la-error4.o \n",
      "libtool: link: ranlib .libs/libnetcdf4.a\n",
      "libtool: link: ( cd \".libs\" && rm -f \"libnetcdf4.la\" && ln -s \"../libnetcdf4.la\" \"libnetcdf4.la\" )\n",
      "make[2]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/libsrc4'\n",
      "Making all in liblib\n",
      "make[2]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/liblib'\n",
      "/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/liblib -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include     -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc4  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT libnetcdf_la-nc_initialize.lo -MD -MP -MF .deps/libnetcdf_la-nc_initialize.Tpo -c -o libnetcdf_la-nc_initialize.lo `test -f 'nc_initialize.c' || echo '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/liblib/'`nc_initialize.c\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/liblib -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc4 -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libnetcdf_la-nc_initialize.lo -MD -MP -MF .deps/libnetcdf_la-nc_initialize.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/liblib/nc_initialize.c  -fPIC -DPIC -o .libs/libnetcdf_la-nc_initialize.o\n",
      "libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/liblib -I.. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc4 -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include -g -O2 -MT libnetcdf_la-nc_initialize.lo -MD -MP -MF .deps/libnetcdf_la-nc_initialize.Tpo -c /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/liblib/nc_initialize.c -o libnetcdf_la-nc_initialize.o >/dev/null 2>&1\n",
      "mv -f .deps/libnetcdf_la-nc_initialize.Tpo .deps/libnetcdf_la-nc_initialize.Plo\n",
      "/bin/sh ../libtool  --tag=CC   --mode=link gcc  -g -O2 -version-info 11:0:0   -L/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib -o libnetcdf.la -rpath /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf/lib libnetcdf_la-nc_initialize.lo ../libdispatch/libnetcdf2.la ../libdispatch/libdispatch.la ../libsrc/libnetcdf3.la   ../libsrc4/libnetcdf4.la -lhdf5_hl -lhdf5 -ldl -lm -lz \n",
      "libtool: link: gcc -shared  -fPIC -DPIC  .libs/libnetcdf_la-nc_initialize.o  -Wl,--whole-archive ../libdispatch/.libs/libnetcdf2.a ../libdispatch/.libs/libdispatch.a ../libsrc/.libs/libnetcdf3.a ../libsrc4/.libs/libnetcdf4.a -Wl,--no-whole-archive  -Wl,-rpath -Wl,/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib -Wl,-rpath -Wl,/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib -L/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib/libhdf5_hl.so /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib/libhdf5.so -ldl -lm -lz  -g -O2   -Wl,-soname -Wl,libnetcdf.so.11 -o .libs/libnetcdf.so.11.0.0\n",
      "libtool: link: (cd \".libs\" && rm -f \"libnetcdf.so.11\" && ln -s \"libnetcdf.so.11.0.0\" \"libnetcdf.so.11\")\n",
      "libtool: link: (cd \".libs\" && rm -f \"libnetcdf.so\" && ln -s \"libnetcdf.so.11.0.0\" \"libnetcdf.so\")\n",
      "libtool: link: (cd .libs/libnetcdf.lax/libnetcdf2.a && ar x \"/gpfs/fs01/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/liblib/../libdispatch/.libs/libnetcdf2.a\")\n",
      "libtool: link: (cd .libs/libnetcdf.lax/libdispatch.a && ar x \"/gpfs/fs01/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/liblib/../libdispatch/.libs/libdispatch.a\")\n",
      "libtool: link: (cd .libs/libnetcdf.lax/libnetcdf3.a && ar x \"/gpfs/fs01/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/liblib/../libsrc/.libs/libnetcdf3.a\")\n",
      "libtool: link: (cd .libs/libnetcdf.lax/libnetcdf4.a && ar x \"/gpfs/fs01/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/liblib/../libsrc4/.libs/libnetcdf4.a\")\n",
      "libtool: link: ar cru .libs/libnetcdf.a  libnetcdf_la-nc_initialize.o  .libs/libnetcdf.lax/libnetcdf2.a/libnetcdf2_la-dv2i.o  .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-datt.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-dattget.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-dattinq.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-dattput.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-dcompound.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-dcopy.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-ddim.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-ddispatch.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-denum.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-derror.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-dfile.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-dgroup.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-dopaque.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-dparallel.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-dstring.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-dsubstrate.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-dtype.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-dutf8proc.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-dvar.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-dvarget.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-dvarinq.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-dvarput.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-dvlen.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-nc.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-ncaux.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-ncbytes.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-nchashmap.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-nclist.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-nclistmgr.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-nclog.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-nctime.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-ncuri.o  .libs/libnetcdf.lax/libnetcdf3.a/libnetcdf3_la-attr.o .libs/libnetcdf.lax/libnetcdf3.a/libnetcdf3_la-dim.o .libs/libnetcdf.lax/libnetcdf3.a/libnetcdf3_la-lookup3.o .libs/libnetcdf.lax/libnetcdf3.a/libnetcdf3_la-memio.o .libs/libnetcdf.lax/libnetcdf3.a/libnetcdf3_la-nc3dispatch.o .libs/libnetcdf.lax/libnetcdf3.a/libnetcdf3_la-nc3internal.o .libs/libnetcdf.lax/libnetcdf3.a/libnetcdf3_la-ncio.o .libs/libnetcdf.lax/libnetcdf3.a/libnetcdf3_la-ncx.o .libs/libnetcdf.lax/libnetcdf3.a/libnetcdf3_la-posixio.o .libs/libnetcdf.lax/libnetcdf3.a/libnetcdf3_la-putget.o .libs/libnetcdf.lax/libnetcdf3.a/libnetcdf3_la-v1hpg.o .libs/libnetcdf.lax/libnetcdf3.a/libnetcdf3_la-var.o  .libs/libnetcdf.lax/libnetcdf4.a/libnetcdf4_la-error4.o .libs/libnetcdf.lax/libnetcdf4.a/libnetcdf4_la-nc4attr.o .libs/libnetcdf.lax/libnetcdf4.a/libnetcdf4_la-nc4dim.o .libs/libnetcdf.lax/libnetcdf4.a/libnetcdf4_la-nc4dispatch.o .libs/libnetcdf.lax/libnetcdf4.a/libnetcdf4_la-nc4file.o .libs/libnetcdf.lax/libnetcdf4.a/libnetcdf4_la-nc4grp.o .libs/libnetcdf.lax/libnetcdf4.a/libnetcdf4_la-nc4hdf.o .libs/libnetcdf.lax/libnetcdf4.a/libnetcdf4_la-nc4internal.o .libs/libnetcdf.lax/libnetcdf4.a/libnetcdf4_la-nc4type.o .libs/libnetcdf.lax/libnetcdf4.a/libnetcdf4_la-nc4var.o .libs/libnetcdf.lax/libnetcdf4.a/libnetcdf4_la-ncfunc.o \n",
      "libtool: link: ranlib .libs/libnetcdf.a\n",
      "libtool: link: rm -fr .libs/libnetcdf.lax\n",
      "libtool: link: ( cd \".libs\" && rm -f \"libnetcdf.la\" && ln -s \"../libnetcdf.la\" \"libnetcdf.la\" )\n",
      "make[2]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/liblib'\n",
      "Making all in ncgen3\n",
      "make[2]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/ncgen3'\n",
      "depbase=`echo main.o | sed 's|[^/]*$|.deps/&|;s|\\.o$||'`;\\\n",
      "gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncgen3 -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include   -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT main.o -MD -MP -MF $depbase.Tpo -c -o main.o /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncgen3/main.c &&\\\n",
      "mv -f $depbase.Tpo $depbase.Po\n",
      "depbase=`echo load.o | sed 's|[^/]*$|.deps/&|;s|\\.o$||'`;\\\n",
      "gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncgen3 -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include   -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT load.o -MD -MP -MF $depbase.Tpo -c -o load.o /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncgen3/load.c &&\\\n",
      "mv -f $depbase.Tpo $depbase.Po\n",
      "depbase=`echo escapes.o | sed 's|[^/]*$|.deps/&|;s|\\.o$||'`;\\\n",
      "gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncgen3 -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include   -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT escapes.o -MD -MP -MF $depbase.Tpo -c -o escapes.o /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncgen3/escapes.c &&\\\n",
      "mv -f $depbase.Tpo $depbase.Po\n",
      "depbase=`echo getfill.o | sed 's|[^/]*$|.deps/&|;s|\\.o$||'`;\\\n",
      "gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncgen3 -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include   -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT getfill.o -MD -MP -MF $depbase.Tpo -c -o getfill.o /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncgen3/getfill.c &&\\\n",
      "mv -f $depbase.Tpo $depbase.Po\n",
      "depbase=`echo init.o | sed 's|[^/]*$|.deps/&|;s|\\.o$||'`;\\\n",
      "gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncgen3 -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include   -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT init.o -MD -MP -MF $depbase.Tpo -c -o init.o /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncgen3/init.c &&\\\n",
      "mv -f $depbase.Tpo $depbase.Po\n",
      "depbase=`echo genlib.o | sed 's|[^/]*$|.deps/&|;s|\\.o$||'`;\\\n",
      "gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncgen3 -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include   -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT genlib.o -MD -MP -MF $depbase.Tpo -c -o genlib.o /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncgen3/genlib.c &&\\\n",
      "mv -f $depbase.Tpo $depbase.Po\n",
      "depbase=`echo ncgentab.o | sed 's|[^/]*$|.deps/&|;s|\\.o$||'`;\\\n",
      "gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncgen3 -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include   -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT ncgentab.o -MD -MP -MF $depbase.Tpo -c -o ncgentab.o /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncgen3/ncgentab.c &&\\\n",
      "mv -f $depbase.Tpo $depbase.Po\n",
      "/bin/sh ../libtool  --tag=CC   --mode=link gcc  -g -O2  -L/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib -o ncgen3 main.o load.o escapes.o getfill.o init.o genlib.o ncgentab.o ../liblib/libnetcdf.la  -lhdf5_hl -lhdf5 -ldl -lm -lz \n",
      "libtool: link: gcc -g -O2 -o .libs/ncgen3 main.o load.o escapes.o getfill.o init.o genlib.o ncgentab.o  -L/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib ../liblib/.libs/libnetcdf.so /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib/libhdf5_hl.so /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib/libhdf5.so -ldl -lm -lz -Wl,-rpath -Wl,/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf/lib -Wl,-rpath -Wl,/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib\n",
      "make[2]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/ncgen3'\n",
      "Making all in ncgen\n",
      "make[2]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/ncgen'\n",
      "depbase=`echo generate.o | sed 's|[^/]*$|.deps/&|;s|\\.o$||'`;\\\n",
      "gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncgen -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include   -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT generate.o -MD -MP -MF $depbase.Tpo -c -o generate.o /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncgen/generate.c &&\\\n",
      "mv -f $depbase.Tpo $depbase.Po\n",
      "depbase=`echo main.o | sed 's|[^/]*$|.deps/&|;s|\\.o$||'`;\\\n",
      "gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncgen -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include   -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT main.o -MD -MP -MF $depbase.Tpo -c -o main.o /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncgen/main.c &&\\\n",
      "mv -f $depbase.Tpo $depbase.Po\n",
      "depbase=`echo cdata.o | sed 's|[^/]*$|.deps/&|;s|\\.o$||'`;\\\n",
      "gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncgen -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include   -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT cdata.o -MD -MP -MF $depbase.Tpo -c -o cdata.o /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncgen/cdata.c &&\\\n",
      "mv -f $depbase.Tpo $depbase.Po\n",
      "depbase=`echo bindata.o | sed 's|[^/]*$|.deps/&|;s|\\.o$||'`;\\\n",
      "gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncgen -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include   -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT bindata.o -MD -MP -MF $depbase.Tpo -c -o bindata.o /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncgen/bindata.c &&\\\n",
      "mv -f $depbase.Tpo $depbase.Po\n",
      "depbase=`echo genchar.o | sed 's|[^/]*$|.deps/&|;s|\\.o$||'`;\\\n",
      "gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncgen -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include   -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT genchar.o -MD -MP -MF $depbase.Tpo -c -o genchar.o /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncgen/genchar.c &&\\\n",
      "mv -f $depbase.Tpo $depbase.Po\n",
      "depbase=`echo cvt.o | sed 's|[^/]*$|.deps/&|;s|\\.o$||'`;\\\n",
      "gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncgen -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include   -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT cvt.o -MD -MP -MF $depbase.Tpo -c -o cvt.o /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncgen/cvt.c &&\\\n",
      "mv -f $depbase.Tpo $depbase.Po\n",
      "depbase=`echo data.o | sed 's|[^/]*$|.deps/&|;s|\\.o$||'`;\\\n",
      "gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncgen -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include   -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT data.o -MD -MP -MF $depbase.Tpo -c -o data.o /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncgen/data.c &&\\\n",
      "mv -f $depbase.Tpo $depbase.Po\n",
      "depbase=`echo debug.o | sed 's|[^/]*$|.deps/&|;s|\\.o$||'`;\\\n",
      "gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncgen -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include   -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT debug.o -MD -MP -MF $depbase.Tpo -c -o debug.o /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncgen/debug.c &&\\\n",
      "mv -f $depbase.Tpo $depbase.Po\n",
      "depbase=`echo escapes.o | sed 's|[^/]*$|.deps/&|;s|\\.o$||'`;\\\n",
      "gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncgen -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include   -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT escapes.o -MD -MP -MF $depbase.Tpo -c -o escapes.o /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncgen/escapes.c &&\\\n",
      "mv -f $depbase.Tpo $depbase.Po\n",
      "depbase=`echo genc.o | sed 's|[^/]*$|.deps/&|;s|\\.o$||'`;\\\n",
      "gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncgen -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include   -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT genc.o -MD -MP -MF $depbase.Tpo -c -o genc.o /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncgen/genc.c &&\\\n",
      "mv -f $depbase.Tpo $depbase.Po\n",
      "depbase=`echo genbin.o | sed 's|[^/]*$|.deps/&|;s|\\.o$||'`;\\\n",
      "gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncgen -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include   -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT genbin.o -MD -MP -MF $depbase.Tpo -c -o genbin.o /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncgen/genbin.c &&\\\n",
      "mv -f $depbase.Tpo $depbase.Po\n",
      "depbase=`echo generr.o | sed 's|[^/]*$|.deps/&|;s|\\.o$||'`;\\\n",
      "gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncgen -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include   -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT generr.o -MD -MP -MF $depbase.Tpo -c -o generr.o /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncgen/generr.c &&\\\n",
      "mv -f $depbase.Tpo $depbase.Po\n",
      "depbase=`echo genlib.o | sed 's|[^/]*$|.deps/&|;s|\\.o$||'`;\\\n",
      "gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncgen -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include   -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT genlib.o -MD -MP -MF $depbase.Tpo -c -o genlib.o /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncgen/genlib.c &&\\\n",
      "mv -f $depbase.Tpo $depbase.Po\n",
      "depbase=`echo getfill.o | sed 's|[^/]*$|.deps/&|;s|\\.o$||'`;\\\n",
      "gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncgen -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include   -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT getfill.o -MD -MP -MF $depbase.Tpo -c -o getfill.o /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncgen/getfill.c &&\\\n",
      "mv -f $depbase.Tpo $depbase.Po\n",
      "depbase=`echo odom.o | sed 's|[^/]*$|.deps/&|;s|\\.o$||'`;\\\n",
      "gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncgen -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include   -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT odom.o -MD -MP -MF $depbase.Tpo -c -o odom.o /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncgen/odom.c &&\\\n",
      "mv -f $depbase.Tpo $depbase.Po\n",
      "depbase=`echo offsets.o | sed 's|[^/]*$|.deps/&|;s|\\.o$||'`;\\\n",
      "gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncgen -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include   -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT offsets.o -MD -MP -MF $depbase.Tpo -c -o offsets.o /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncgen/offsets.c &&\\\n",
      "mv -f $depbase.Tpo $depbase.Po\n",
      "depbase=`echo semantics.o | sed 's|[^/]*$|.deps/&|;s|\\.o$||'`;\\\n",
      "gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncgen -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include   -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT semantics.o -MD -MP -MF $depbase.Tpo -c -o semantics.o /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncgen/semantics.c &&\\\n",
      "mv -f $depbase.Tpo $depbase.Po\n",
      "depbase=`echo dump.o | sed 's|[^/]*$|.deps/&|;s|\\.o$||'`;\\\n",
      "gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncgen -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include   -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT dump.o -MD -MP -MF $depbase.Tpo -c -o dump.o /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncgen/dump.c &&\\\n",
      "mv -f $depbase.Tpo $depbase.Po\n",
      "depbase=`echo util.o | sed 's|[^/]*$|.deps/&|;s|\\.o$||'`;\\\n",
      "gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncgen -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include   -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT util.o -MD -MP -MF $depbase.Tpo -c -o util.o /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncgen/util.c &&\\\n",
      "mv -f $depbase.Tpo $depbase.Po\n",
      "depbase=`echo bytebuffer.o | sed 's|[^/]*$|.deps/&|;s|\\.o$||'`;\\\n",
      "gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncgen -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include   -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT bytebuffer.o -MD -MP -MF $depbase.Tpo -c -o bytebuffer.o /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncgen/bytebuffer.c &&\\\n",
      "mv -f $depbase.Tpo $depbase.Po\n",
      "depbase=`echo list.o | sed 's|[^/]*$|.deps/&|;s|\\.o$||'`;\\\n",
      "gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncgen -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include   -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT list.o -MD -MP -MF $depbase.Tpo -c -o list.o /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncgen/list.c &&\\\n",
      "mv -f $depbase.Tpo $depbase.Po\n",
      "depbase=`echo genf77.o | sed 's|[^/]*$|.deps/&|;s|\\.o$||'`;\\\n",
      "gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncgen -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include   -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT genf77.o -MD -MP -MF $depbase.Tpo -c -o genf77.o /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncgen/genf77.c &&\\\n",
      "mv -f $depbase.Tpo $depbase.Po\n",
      "depbase=`echo f77data.o | sed 's|[^/]*$|.deps/&|;s|\\.o$||'`;\\\n",
      "gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncgen -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include   -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT f77data.o -MD -MP -MF $depbase.Tpo -c -o f77data.o /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncgen/f77data.c &&\\\n",
      "mv -f $depbase.Tpo $depbase.Po\n",
      "depbase=`echo genj.o | sed 's|[^/]*$|.deps/&|;s|\\.o$||'`;\\\n",
      "gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncgen -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include   -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT genj.o -MD -MP -MF $depbase.Tpo -c -o genj.o /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncgen/genj.c &&\\\n",
      "mv -f $depbase.Tpo $depbase.Po\n",
      "depbase=`echo jdata.o | sed 's|[^/]*$|.deps/&|;s|\\.o$||'`;\\\n",
      "gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncgen -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include   -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT jdata.o -MD -MP -MF $depbase.Tpo -c -o jdata.o /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncgen/jdata.c &&\\\n",
      "mv -f $depbase.Tpo $depbase.Po\n",
      "depbase=`echo nc_iter.o | sed 's|[^/]*$|.deps/&|;s|\\.o$||'`;\\\n",
      "gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncgen -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include   -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT nc_iter.o -MD -MP -MF $depbase.Tpo -c -o nc_iter.o /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncgen/nc_iter.c &&\\\n",
      "mv -f $depbase.Tpo $depbase.Po\n",
      "depbase=`echo ConvertUTF.o | sed 's|[^/]*$|.deps/&|;s|\\.o$||'`;\\\n",
      "gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncgen -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include   -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT ConvertUTF.o -MD -MP -MF $depbase.Tpo -c -o ConvertUTF.o /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncgen/ConvertUTF.c &&\\\n",
      "mv -f $depbase.Tpo $depbase.Po\n",
      "depbase=`echo ncgeny.o | sed 's|[^/]*$|.deps/&|;s|\\.o$||'`;\\\n",
      "gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncgen -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include   -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT ncgeny.o -MD -MP -MF $depbase.Tpo -c -o ncgeny.o /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncgen/ncgeny.c &&\\\n",
      "mv -f $depbase.Tpo $depbase.Po\n",
      "/bin/sh ../libtool  --tag=CC   --mode=link gcc  -g -O2  -L/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib -o ncgen generate.o main.o cdata.o bindata.o genchar.o cvt.o data.o debug.o escapes.o genc.o genbin.o generr.o genlib.o getfill.o odom.o offsets.o semantics.o dump.o util.o bytebuffer.o list.o genf77.o f77data.o genj.o jdata.o nc_iter.o ConvertUTF.o ncgeny.o ../liblib/libnetcdf.la -lhdf5_hl -lhdf5 -ldl -lm -lz \n",
      "libtool: link: gcc -g -O2 -o .libs/ncgen generate.o main.o cdata.o bindata.o genchar.o cvt.o data.o debug.o escapes.o genc.o genbin.o generr.o genlib.o getfill.o odom.o offsets.o semantics.o dump.o util.o bytebuffer.o list.o genf77.o f77data.o genj.o jdata.o nc_iter.o ConvertUTF.o ncgeny.o  -L/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib ../liblib/.libs/libnetcdf.so /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib/libhdf5_hl.so /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib/libhdf5.so -ldl -lm -lz -Wl,-rpath -Wl,/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf/lib -Wl,-rpath -Wl,/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib\n",
      "make[2]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/ncgen'\n",
      "Making all in ncdump\n",
      "make[2]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/ncdump'\n",
      "../ncgen/ncgen -lc -o ctest0.nc /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncgen/c0.cdl > ../ncdump/ctest.c\n",
      "../ncgen/ncgen -k2 -lc -o ctest0_64.nc /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncgen/c0.cdl > /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncdump/ctest64.c\n",
      "make  all-recursive\n",
      "make[3]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/ncdump'\n",
      "Making all in cdl\n",
      "make[4]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/ncdump/cdl'\n",
      "make[4]: Nothing to be done for `all'.\n",
      "make[4]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/ncdump/cdl'\n",
      "Making all in expected\n",
      "make[4]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/ncdump/expected'\n",
      "make[4]: Nothing to be done for `all'.\n",
      "make[4]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/ncdump/expected'\n",
      "make[4]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/ncdump'\n",
      "depbase=`echo ncdump.o | sed 's|[^/]*$|.deps/&|;s|\\.o$||'`;\\\n",
      "gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncdump -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include   -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT ncdump.o -MD -MP -MF $depbase.Tpo -c -o ncdump.o /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncdump/ncdump.c &&\\\n",
      "mv -f $depbase.Tpo $depbase.Po\n",
      "depbase=`echo vardata.o | sed 's|[^/]*$|.deps/&|;s|\\.o$||'`;\\\n",
      "gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncdump -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include   -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT vardata.o -MD -MP -MF $depbase.Tpo -c -o vardata.o /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncdump/vardata.c &&\\\n",
      "mv -f $depbase.Tpo $depbase.Po\n",
      "depbase=`echo dumplib.o | sed 's|[^/]*$|.deps/&|;s|\\.o$||'`;\\\n",
      "gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncdump -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include   -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT dumplib.o -MD -MP -MF $depbase.Tpo -c -o dumplib.o /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncdump/dumplib.c &&\\\n",
      "mv -f $depbase.Tpo $depbase.Po\n",
      "depbase=`echo indent.o | sed 's|[^/]*$|.deps/&|;s|\\.o$||'`;\\\n",
      "gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncdump -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include   -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT indent.o -MD -MP -MF $depbase.Tpo -c -o indent.o /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncdump/indent.c &&\\\n",
      "mv -f $depbase.Tpo $depbase.Po\n",
      "depbase=`echo nctime0.o | sed 's|[^/]*$|.deps/&|;s|\\.o$||'`;\\\n",
      "gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncdump -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include   -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT nctime0.o -MD -MP -MF $depbase.Tpo -c -o nctime0.o /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncdump/nctime0.c &&\\\n",
      "mv -f $depbase.Tpo $depbase.Po\n",
      "depbase=`echo utils.o | sed 's|[^/]*$|.deps/&|;s|\\.o$||'`;\\\n",
      "gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncdump -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include   -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT utils.o -MD -MP -MF $depbase.Tpo -c -o utils.o /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncdump/utils.c &&\\\n",
      "mv -f $depbase.Tpo $depbase.Po\n",
      "depbase=`echo nciter.o | sed 's|[^/]*$|.deps/&|;s|\\.o$||'`;\\\n",
      "gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncdump -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include   -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT nciter.o -MD -MP -MF $depbase.Tpo -c -o nciter.o /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncdump/nciter.c &&\\\n",
      "mv -f $depbase.Tpo $depbase.Po\n",
      "depbase=`echo nccopy.o | sed 's|[^/]*$|.deps/&|;s|\\.o$||'`;\\\n",
      "gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncdump -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include   -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT nccopy.o -MD -MP -MF $depbase.Tpo -c -o nccopy.o /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncdump/nccopy.c &&\\\n",
      "mv -f $depbase.Tpo $depbase.Po\n",
      "depbase=`echo chunkspec.o | sed 's|[^/]*$|.deps/&|;s|\\.o$||'`;\\\n",
      "gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncdump -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include   -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT chunkspec.o -MD -MP -MF $depbase.Tpo -c -o chunkspec.o /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncdump/chunkspec.c &&\\\n",
      "mv -f $depbase.Tpo $depbase.Po\n",
      "depbase=`echo dimmap.o | sed 's|[^/]*$|.deps/&|;s|\\.o$||'`;\\\n",
      "gcc -DHAVE_CONFIG_H -I. -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncdump -I..  -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include   -I/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/include  -g -O2 -MT dimmap.o -MD -MP -MF $depbase.Tpo -c -o dimmap.o /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncdump/dimmap.c &&\\\n",
      "mv -f $depbase.Tpo $depbase.Po\n",
      "/bin/sh ../libtool  --tag=CC   --mode=link gcc  -g -O2  -L/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib -o ncdump ncdump.o vardata.o dumplib.o indent.o nctime0.o utils.o nciter.o ../liblib/libnetcdf.la -lhdf5_hl -lhdf5 -ldl -lm -lz \n",
      "/bin/sh ../libtool  --tag=CC   --mode=link gcc  -g -O2  -L/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib -o nccopy nccopy.o nciter.o chunkspec.o utils.o dimmap.o ../liblib/libnetcdf.la -lhdf5_hl -lhdf5 -ldl -lm -lz \n",
      "libtool: link: gcc -g -O2 -o .libs/ncdump ncdump.o vardata.o dumplib.o indent.o nctime0.o utils.o nciter.o  -L/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib ../liblib/.libs/libnetcdf.so /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib/libhdf5_hl.so /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib/libhdf5.so -ldl -lm -lz -Wl,-rpath -Wl,/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf/lib -Wl,-rpath -Wl,/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib\n",
      "libtool: link: gcc -g -O2 -o .libs/nccopy nccopy.o nciter.o chunkspec.o utils.o dimmap.o  -L/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib ../liblib/.libs/libnetcdf.so /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib/libhdf5_hl.so /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib/libhdf5.so -ldl -lm -lz -Wl,-rpath -Wl,/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf/lib -Wl,-rpath -Wl,/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_hdf5/hdf5/lib\n",
      "make[4]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/ncdump'\n",
      "make[3]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/ncdump'\n",
      "make[2]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/ncdump'\n",
      "Making all in nctest\n",
      "make[2]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/nctest'\n",
      "make[2]: Nothing to be done for `all'.\n",
      "make[2]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/nctest'\n",
      "Making all in nc_test\n",
      "make[2]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/nc_test'\n",
      "cp /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/libsrc/ncx.c .\n",
      "make[2]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/nc_test'\n",
      "Making all in nc_test4\n",
      "make[2]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/nc_test4'\n",
      "make[2]: Nothing to be done for `all'.\n",
      "make[2]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/nc_test4'\n",
      "Making all in docs\n",
      "make[2]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/docs'\n",
      "Making all in images\n",
      "make[3]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/docs/images'\n",
      "make[3]: Nothing to be done for `all'.\n",
      "make[3]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/docs/images'\n",
      "make[3]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/docs'\n",
      "make[3]: Nothing to be done for `all-am'.\n",
      "make[3]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/docs'\n",
      "make[2]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/docs'\n",
      "Making all in examples\n",
      "make[2]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/examples'\n",
      "Making all in C\n",
      "make[3]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/examples/C'\n",
      "make[3]: Nothing to be done for `all'.\n",
      "make[3]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/examples/C'\n",
      "Making all in CDL\n",
      "make[3]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/examples/CDL'\n",
      "make[3]: Nothing to be done for `all'.\n",
      "make[3]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/examples/CDL'\n",
      "make[3]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/examples'\n",
      "make[3]: Nothing to be done for `all-am'.\n",
      "make[3]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/examples'\n",
      "make[2]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/examples'\n",
      "make[2]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work'\n",
      "make[2]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work'\n",
      "make[1]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work'\n",
      "make: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work'\n",
      "make: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work'\n",
      "Making install in include\n",
      "make[1]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/include'\n",
      "make[2]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/include'\n",
      "make[2]: Nothing to be done for `install-exec-am'.\n",
      " /bin/mkdir -p '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf/include'\n",
      " /bin/install -c -m 644 /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include/netcdf.h netcdf_meta.h /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/include/netcdf_mem.h '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf/include'\n",
      "make[2]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/include'\n",
      "make[1]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/include'\n",
      "Making install in h5_test\n",
      "make[1]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/h5_test'\n",
      "make[2]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/h5_test'\n",
      "make[2]: Nothing to be done for `install-exec-am'.\n",
      "make[2]: Nothing to be done for `install-data-am'.\n",
      "make[2]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/h5_test'\n",
      "make[1]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/h5_test'\n",
      "Making install in libdispatch\n",
      "make[1]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/libdispatch'\n",
      "make[2]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/libdispatch'\n",
      "make[2]: Nothing to be done for `install-exec-am'.\n",
      "make[2]: Nothing to be done for `install-data-am'.\n",
      "make[2]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/libdispatch'\n",
      "make[1]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/libdispatch'\n",
      "Making install in libsrc\n",
      "make[1]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/libsrc'\n",
      "make[2]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/libsrc'\n",
      "make[2]: Nothing to be done for `install-exec-am'.\n",
      " /bin/mkdir -p '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf/share/man/man3'\n",
      " /bin/install -c -m 644 netcdf.3 '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf/share/man/man3'\n",
      "make[2]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/libsrc'\n",
      "make[1]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/libsrc'\n",
      "Making install in libsrc4\n",
      "make[1]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/libsrc4'\n",
      "make[2]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/libsrc4'\n",
      "make[2]: Nothing to be done for `install-exec-am'.\n",
      "make[2]: Nothing to be done for `install-data-am'.\n",
      "make[2]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/libsrc4'\n",
      "make[1]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/libsrc4'\n",
      "Making install in liblib\n",
      "make[1]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/liblib'\n",
      "make[2]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/liblib'\n",
      " /bin/mkdir -p '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf/lib'\n",
      " /bin/sh ../libtool   --mode=install /bin/install -c   libnetcdf.la '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf/lib'\n",
      "libtool: install: /bin/install -c .libs/libnetcdf.so.11.0.0 /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf/lib/libnetcdf.so.11.0.0\n",
      "libtool: install: (cd /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf/lib && { ln -s -f libnetcdf.so.11.0.0 libnetcdf.so.11 || { rm -f libnetcdf.so.11 && ln -s libnetcdf.so.11.0.0 libnetcdf.so.11; }; })\n",
      "libtool: install: (cd /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf/lib && { ln -s -f libnetcdf.so.11.0.0 libnetcdf.so || { rm -f libnetcdf.so && ln -s libnetcdf.so.11.0.0 libnetcdf.so; }; })\n",
      "libtool: install: /bin/install -c .libs/libnetcdf.lai /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf/lib/libnetcdf.la\n",
      "libtool: install: /bin/install -c .libs/libnetcdf.a /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf/lib/libnetcdf.a\n",
      "libtool: install: chmod 644 /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf/lib/libnetcdf.a\n",
      "libtool: install: ranlib /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf/lib/libnetcdf.a\n",
      "libtool: finish: PATH=\"/usr/local/src/bluemix_jupyter_bundle.v4/notebook/bin:/usr/local/src/bluemix_jupyter_bundle.v4/notebook/system/bin:/usr/local/src/bluemix_jupyter_bundle.v4/notebook/freetype/bin:/usr/local/src/bluemix_jupyter_bundle.v4/notebook/bin:/usr/local/src/bluemix_jupyter_bundle.v4/notebook/system/bin:/usr/local/src/bluemix_jupyter_bundle.v4/notebook/freetype/bin:/bin:/sbin\" ldconfig -n /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf/lib\n",
      "----------------------------------------------------------------------\n",
      "Libraries have been installed in:\n",
      "   /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf/lib\n",
      "\n",
      "If you ever happen to want to link against installed libraries\n",
      "in a given directory, LIBDIR, you must either use libtool, and\n",
      "specify the full pathname of the library, or use the '-LLIBDIR'\n",
      "flag during linking and do at least one of the following:\n",
      "   - add LIBDIR to the 'LD_LIBRARY_PATH' environment variable\n",
      "     during execution\n",
      "   - add LIBDIR to the 'LD_RUN_PATH' environment variable\n",
      "     during linking\n",
      "   - use the '-Wl,-rpath -Wl,LIBDIR' linker flag\n",
      "   - have your system administrator add LIBDIR to '/etc/ld.so.conf'\n",
      "\n",
      "See any operating system documentation about shared libraries for\n",
      "more information, such as the ld(1) and ld.so(8) manual pages.\n",
      "----------------------------------------------------------------------\n",
      "make[2]: Nothing to be done for `install-data-am'.\n",
      "make[2]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/liblib'\n",
      "make[1]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/liblib'\n",
      "Making install in ncgen3\n",
      "make[1]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/ncgen3'\n",
      "make[2]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/ncgen3'\n",
      " /bin/mkdir -p '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf/bin'\n",
      "  /bin/sh ../libtool   --mode=install /bin/install -c ncgen3 '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf/bin'\n",
      "libtool: install: /bin/install -c .libs/ncgen3 /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf/bin/ncgen3\n",
      " /bin/mkdir -p '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf/share/man/man1'\n",
      " /bin/install -c -m 644 /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncgen3/ncgen3.1 '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf/share/man/man1'\n",
      "make[2]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/ncgen3'\n",
      "make[1]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/ncgen3'\n",
      "Making install in ncgen\n",
      "make[1]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/ncgen'\n",
      "make[2]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/ncgen'\n",
      " /bin/mkdir -p '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf/bin'\n",
      "  /bin/sh ../libtool   --mode=install /bin/install -c ncgen '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf/bin'\n",
      "libtool: install: /bin/install -c .libs/ncgen /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf/bin/ncgen\n",
      " /bin/mkdir -p '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf/share/man/man1'\n",
      " /bin/install -c -m 644 /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncgen/ncgen.1 '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf/share/man/man1'\n",
      "make[2]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/ncgen'\n",
      "make[1]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/ncgen'\n",
      "Making install in ncdump\n",
      "make[1]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/ncdump'\n",
      "make  install-recursive\n",
      "make[2]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/ncdump'\n",
      "Making install in cdl\n",
      "make[3]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/ncdump/cdl'\n",
      "make[4]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/ncdump/cdl'\n",
      "make[4]: Nothing to be done for `install-exec-am'.\n",
      "make[4]: Nothing to be done for `install-data-am'.\n",
      "make[4]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/ncdump/cdl'\n",
      "make[3]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/ncdump/cdl'\n",
      "Making install in expected\n",
      "make[3]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/ncdump/expected'\n",
      "make[4]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/ncdump/expected'\n",
      "make[4]: Nothing to be done for `install-exec-am'.\n",
      "make[4]: Nothing to be done for `install-data-am'.\n",
      "make[4]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/ncdump/expected'\n",
      "make[3]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/ncdump/expected'\n",
      "make[3]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/ncdump'\n",
      "make[4]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/ncdump'\n",
      " /bin/mkdir -p '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf/bin'\n",
      "  /bin/sh ../libtool   --mode=install /bin/install -c ncdump nccopy '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf/bin'\n",
      "libtool: install: /bin/install -c .libs/ncdump /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf/bin/ncdump\n",
      "libtool: install: /bin/install -c .libs/nccopy /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf/bin/nccopy\n",
      " /bin/mkdir -p '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf/share/man/man1'\n",
      " /bin/install -c -m 644 /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncdump/ncdump.1 /gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf-c-4.4.0/ncdump/nccopy.1 '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf/share/man/man1'\n",
      "make[4]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/ncdump'\n",
      "make[3]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/ncdump'\n",
      "make[2]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/ncdump'\n",
      "make[1]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/ncdump'\n",
      "Making install in nctest\n",
      "make[1]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/nctest'\n",
      "make[2]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/nctest'\n",
      "make[2]: Nothing to be done for `install-exec-am'.\n",
      "make[2]: Nothing to be done for `install-data-am'.\n",
      "make[2]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/nctest'\n",
      "make[1]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/nctest'\n",
      "Making install in nc_test\n",
      "make[1]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/nc_test'\n",
      "make[2]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/nc_test'\n",
      "make[2]: Nothing to be done for `install-exec-am'.\n",
      "make[2]: Nothing to be done for `install-data-am'.\n",
      "make[2]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/nc_test'\n",
      "make[1]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/nc_test'\n",
      "Making install in nc_test4\n",
      "make[1]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/nc_test4'\n",
      "make[2]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/nc_test4'\n",
      "make[2]: Nothing to be done for `install-exec-am'.\n",
      "make[2]: Nothing to be done for `install-data-am'.\n",
      "make[2]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/nc_test4'\n",
      "make[1]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/nc_test4'\n",
      "Making install in docs\n",
      "make[1]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/docs'\n",
      "Making install in images\n",
      "make[2]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/docs/images'\n",
      "make[3]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/docs/images'\n",
      "make[3]: Nothing to be done for `install-exec-am'.\n",
      "make[3]: Nothing to be done for `install-data-am'.\n",
      "make[3]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/docs/images'\n",
      "make[2]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/docs/images'\n",
      "make[2]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/docs'\n",
      "make[3]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/docs'\n",
      "make[3]: Nothing to be done for `install-exec-am'.\n",
      "make[3]: Nothing to be done for `install-data-am'.\n",
      "make[3]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/docs'\n",
      "make[2]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/docs'\n",
      "make[1]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/docs'\n",
      "Making install in examples\n",
      "make[1]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/examples'\n",
      "Making install in C\n",
      "make[2]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/examples/C'\n",
      "make[3]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/examples/C'\n",
      "make[3]: Nothing to be done for `install-exec-am'.\n",
      "make[3]: Nothing to be done for `install-data-am'.\n",
      "make[3]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/examples/C'\n",
      "make[2]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/examples/C'\n",
      "Making install in CDL\n",
      "make[2]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/examples/CDL'\n",
      "make[3]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/examples/CDL'\n",
      "make[3]: Nothing to be done for `install-exec-am'.\n",
      "make[3]: Nothing to be done for `install-data-am'.\n",
      "make[3]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/examples/CDL'\n",
      "make[2]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/examples/CDL'\n",
      "make[2]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/examples'\n",
      "make[3]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/examples'\n",
      "make[3]: Nothing to be done for `install-exec-am'.\n",
      "make[3]: Nothing to be done for `install-data-am'.\n",
      "make[3]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/examples'\n",
      "make[2]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/examples'\n",
      "make[1]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work/examples'\n",
      "make[1]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work'\n",
      "make[2]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work'\n",
      " /bin/mkdir -p '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf/bin'\n",
      " /bin/install -c nc-config '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf/bin'\n",
      " /bin/mkdir -p '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf/lib/pkgconfig'\n",
      " /bin/install -c -m 644 netcdf.pc '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf/lib/pkgconfig'\n",
      " /bin/mkdir -p '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf/lib'\n",
      " /bin/install -c -m 644 libnetcdf.settings '/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/.local/share/notebook_netcdf/netcdf/lib'\n",
      "make  install-data-hook\n",
      "make[3]: Entering directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work'\n",
      "\n",
      "+-------------------------------------------------------------+\n",
      "| Congratulations! You have successfully installed netCDF!    |\n",
      "|                                                             |\n",
      "| You can use script \"nc-config\" to find out the relevant     |\n",
      "| compiler options to build your application. Enter           |\n",
      "|                                                             |\n",
      "|     nc-config --help                                        |\n",
      "|                                                             |\n",
      "| for additional information.                                 |\n",
      "|                                                             |\n",
      "| CAUTION:                                                    |\n",
      "|                                                             |\n",
      "| If you have not already run \"make check\", then we strongly  |\n",
      "| recommend you do so. It does not take very long.            |\n",
      "|                                                             |\n",
      "| Before using netCDF to store important data, test your      |\n",
      "| build with \"make check\".                                    |\n",
      "|                                                             |\n",
      "| NetCDF is tested nightly on many platforms at Unidata       |\n",
      "| but your platform is probably different in some ways.       |\n",
      "|                                                             |\n",
      "| If any tests fail, please see the netCDF web site:          |\n",
      "| http://www.unidata.ucar.edu/software/netcdf/                |\n",
      "|                                                             |\n",
      "| NetCDF is developed and maintained at the Unidata Program   |\n",
      "| Center. Unidata provides a broad array of data and software |\n",
      "| tools for use in geoscience education and research.         |\n",
      "| http://www.unidata.ucar.edu                                 |\n",
      "+-------------------------------------------------------------+\n",
      "\n",
      "make[3]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work'\n",
      "make[2]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work'\n",
      "make[1]: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work'\n",
      "make: Leaving directory `/gpfs/global_fs01/sym_shared/YPProdSpark/user/s1a2-472d95bcebf7db-bf066087ecf5/notebook/work'\n"
     ]
    }
   ],
   "source": [
    "!make -w -j2 && make -w install"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "<div class=\"alert alert-danger\" role=\"alert\">\n",
    "  <strong>WARNING</strong> You may have to reload your browser to continue.  The Make and Make Install process can sometimes cause the notebook to lose it's kernel context.  Don't worry, all of the compiled files will persist across the browser reload.\n",
    "</div>"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Housekeeping"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 19,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "NETCDF directories for facilitating NETCDF build and install have been removed\n"
     ]
    }
   ],
   "source": [
    "# Re-evaluate installation status\n",
    "isNETCDFInstalled = os.path.isfile(netcdfDir + \"/netcdf/bin/nc-config\")\n",
    "\n",
    "if isNETCDFInstalled:\n",
    "    # Remove all of configure generated by-products\n",
    "    !rm -rf * 2>/dev/null\n",
    "    # Remove the extracted source folder\n",
    "    !rm -rf $netcdfDir/netcdf-c-4.4.0 2>/dev/null\n",
    "    # Remove the tar gzip file\n",
    "    !rm $netcdfDir/v4.4.0.tar.gz 2>/dev/null\n",
    "    print \"NETCDF directories for facilitating NETCDF build and install have been removed\"\n",
    "else:\n",
    "    print \"NETCDF build and install seems to have failed.  Cannot local <NETCDF_Install_Point>/bin/nc-config\""
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "<div class=\"alert alert-info\" role=\"alert\">\n",
    "  <strong>Prequisite Native Library Installs Complete</strong> Let's now do some pip installs\n",
    "</div>"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "### Setting up custom paths via Environment Variables"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 20,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": [
    "if isHDF5Installed:\n",
    "    os.environ['HDF5_DIR']= hdf5Dir + \"/hdf5\"\n",
    "    os.environ['HDF5_DIR_INCDIR']= hdf5Dir + \"/hdf5/inc\"\n",
    "    os.environ['HDF5_DIR_LIBDIR']= hdf5Dir + \"/hdf5/lib\"\n",
    "    os.environ['PKG_CONFIG_PATH']= hdf5Dir + \"/hdf5\" \n",
    "\n",
    "if isNETCDFInstalled:\n",
    "    os.environ['NETCDF4_DIR']= netcdfDir + \"/netcdf\"\n",
    "    os.environ['NETCDF4_INCDIR']= netcdfDir + \"/netcdf/inc\"\n",
    "    os.environ['NETCDF4_LIBDIR']= netcdfDir + \"/netcdf/lib\" \n",
    "    os.environ['PKG_CONFIG_PATH']= netcdfDir + \"/netcdf\"\n",
    "    \n",
    "if isHDF5Installed and isNETCDFInstalled:\n",
    "    os.environ['PKG_CONFIG_PATH']= netcdfDir + \"/netcdf\" + \":\" + hdf5Dir + \"/hdf5\"   # Needed for NETCDF4 PIP Install\n",
    "    os.environ['USE_NCCONFIG']= \"1\"  # Needed for NETCDF4 PIP Install\n",
    "    os.environ['USE_SETUPCFG']= \"0\"  # Needed for NETCDF4 PIP Install"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "### Installing pkgconfig Python module :: interface with the pkg-config command line tool "
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 21,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Collecting pkgconfig\n",
      "  Using cached pkgconfig-1.1.0.tar.gz\n",
      "Installing collected packages: pkgconfig\n",
      "  Running setup.py install for pkgconfig ... \u001b[?25l-\b \bdone\n",
      "\u001b[?25hSuccessfully installed pkgconfig-1.1.0\n"
     ]
    }
   ],
   "source": [
    "!pip install pkgconfig --user"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "### Installing h5py Python module :: The h5py package provides both a high- and low-level interface to the HDF5 library from Python. The low-level interface is intended to be a complete wrapping of the HDF5 API, while the high-level component supports access to HDF5 files, datasets and groups using established Python and NumPy concepts."
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 22,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Collecting h5py\n",
      "  Using cached h5py-2.6.0.tar.gz\n",
      "Requirement already satisfied (use --upgrade to upgrade): numpy>=1.6.1 in /usr/local/src/bluemix_jupyter_bundle.v4/notebook/lib/python2.7/site-packages (from h5py)\n",
      "Requirement already satisfied (use --upgrade to upgrade): six in /usr/local/src/bluemix_jupyter_bundle.v4/notebook/lib/python2.7/site-packages (from h5py)\n",
      "Installing collected packages: h5py\n",
      "  Running setup.py install for h5py ... \u001b[?25l-\b \b\\\b \b|\b \b/\b \b-\b \b\\\b \b|\b \b/\b \b-\b \b\\\b \b|\b \b/\b \b-\b \b\\\b \b|\b \b/\b \b-\b \b\\\b \b|\b \b/\b \b-\b \b\\\b \b|\b \b/\b \b-\b \b\\\b \b|\b \b/\b \b-\b \b\\\b \b|\b \b/\b \b-\b \b\\\b \b|\b \b/\b \b-\b \b\\\b \b|\b \b/\b \b-\b \b\\\b \b|\b \b/\b \b-\b \b\\\b \b|\b \b/\b \b-\b \b\\\b \b|\b \b/\b \b-\b \b\\\b \b|\b \b/\b \b-\b \b\\\b \bdone\n",
      "\u001b[?25hSuccessfully installed h5py-2.6.0\n"
     ]
    }
   ],
   "source": [
    "if isHDF5Installed:\n",
    "    !pip install h5py --user"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "### Installing NETCDF4 Python module :: netCDF version 4 has many features not found in earlier versions of the library and is implemented on top of HDF5. This module can read and write files in both the new netCDF 4 and the old netCDF 3 format, and can create files that are readable by HDF5 clients. The API modelled after Scientific.IO.NetCDF, and should be familiar to users of that module."
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "<div class=\"alert alert-info\" role=\"alert\">\n",
    "  The NETCDF4 module pip installation requires context on the install locations of HDF5 and NETCDF.  \n",
    "  Given that it uses the pkg-config process, we must create 2 *.pc files that outline their installation location.\n",
    "  <ol><li>hdf5.pc</li>\n",
    "  <li>netcfd.pc</li></ol>\n",
    "</div>"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "### Create HDF5.pc file"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 23,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "!echo \"# An example pkg-config file for hdf5.  Fix the paths if necessary and put\" > hdf5.pc\n",
    "!echo \"# this in a place where pkg-config will find it.  You can find where it's\" >> hdf5.pc\n",
    "!echo \"# searching now with the following command:\" >> hdf5.pc\n",
    "!echo \"#\" >> hdf5.pc\n",
    "!echo \"#   $ pkg-config --variable pc_path pkg-config\" >> hdf5.pc\n",
    "!echo \"#\" >> hdf5.pc\n",
    "!echo \"# According to the man page, you can override this if necessary by\" >> hdf5.pc\n",
    "!echo \"# setting PKG_CONFIG_PATH\" >> hdf5.pc\n",
    "!echo \"#\" >> hdf5.pc\n",
    "!echo \"\" >> hdf5.pc\n",
    "!echo \"prefix=${HDF5_DIR}\" >> hdf5.pc\n",
    "!echo \"exec_prefix=${HDF5_DIR}\" >> hdf5.pc\n",
    "!echo \"includedir=${HDF5_DIR}/include\" >> hdf5.pc\n",
    "!echo \"libdir=${HDF5_DIR}/lib\" >> hdf5.pc\n",
    "!echo \"\" >> hdf5.pc\n",
    "!echo \"Name: hdf5\" >> hdf5.pc\n",
    "!echo \"Description: HDF5\" >> hdf5.pc\n",
    "!echo \"Version: 1.8.17\" >> hdf5.pc\n",
    "!echo \"Requires.private: zlib\" >> hdf5.pc\n",
    "!echo \"Cflags: -I${HDF5_DIR}/include\" >> hdf5.pc\n",
    "!echo \"Libs: -L${HDF5_DIR}/lib -lhdf5\" >> hdf5.pc"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "### Move the HDF5.pc file into the HDF5 install location"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 24,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "!mv hdf5.pc $hdf5Dir/hdf5"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "### Create NETCDF.pc file"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 25,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": [
    "!echo \"# An example pkg-config file for netcdf.  Fix the paths if necessary and put\" > netcdf.pc\n",
    "!echo \"# this in a place where pkg-config will find it.  You can find where it's\" >> netcdf.pc\n",
    "!echo \"# searching now with the following command:\" >> netcdf.pc\n",
    "!echo \"#\" >> netcdf.pc\n",
    "!echo \"#   $ pkg-config --variable pc_path pkg-config\" >> netcdf.pc\n",
    "!echo \"#\" >> netcdf.pc\n",
    "!echo \"# According to the man page, you can override this if necessary by\" >> netcdf.pc\n",
    "!echo \"# setting PKG_CONFIG_PATH\" >> netcdf.pc\n",
    "!echo \"#\" >> netcdf.pc\n",
    "!echo \"\" >> netcdf.pc\n",
    "!echo \"prefix=${NETCDF4_DIR}\" >> netcdf.pc\n",
    "!echo \"exec_prefix=${NETCDF4_DIR}\" >> netcdf.pc\n",
    "!echo \"includedir=${NETCDF4_DIR}/include\" >> netcdf.pc\n",
    "!echo \"libdir=${NETCDF4_DIR}/lib\" >> netcdf.pc\n",
    "!echo \"ccompiler=gcc\" >> netcdf.pc\n",
    "\n",
    "!echo \"\" >> netcdf.pc\n",
    "!echo \"Name: netcdf\" >> netcdf.pc\n",
    "!echo \"Description: NetCDF Client Library\" >> netcdf.pc\n",
    "!echo \"URL: http://www.unidata.ucar.edu/netcdf\" >> netcdf.pc\n",
    "!echo \"Version: 4.4.0\" >> netcdf.pc\n",
    "!echo \"Requires.private: zlib\" >> hdf5.pc\n",
    "!echo \"Cflags: -I${NETCDF4_DIR}/include\" >> netcdf.pc\n",
    "!echo \"Libs: -L${NETCDF4_DIR}/lib -lnetcdf\" >> netcdf.pc"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "### Move the NETCDF.pc file into the NETCDF install location"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 26,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "!mv netcdf.pc $netcdfDir/netcdf"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 27,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Collecting netCDF4\n",
      "  Using cached netCDF4-1.2.4.tar.gz\n",
      "Requirement already satisfied (use --upgrade to upgrade): numpy>=1.7 in /usr/local/src/bluemix_jupyter_bundle.v4/notebook/lib/python2.7/site-packages (from netCDF4)\n",
      "Installing collected packages: netCDF4\n",
      "  Running setup.py install for netCDF4 ... \u001b[?25l-\b \b\\\b \b|\b \b/\b \b-\b \b\\\b \b|\b \b/\b \b-\b \b\\\b \b|\b \bdone\n",
      "\u001b[?25hSuccessfully installed netCDF4-1.2.4\n"
     ]
    }
   ],
   "source": [
    "if isHDF5Installed and isNETCDFInstalled:\n",
    "    !pip install netCDF4 --user"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "<div class=\"alert alert-success\" role=\"alert\">\n",
    "  <strong>Congratulations</strong> You went through the wormhole and made it to the other side.  \n",
    "  Let's review our accomplishments:\n",
    "  <ol><li>HDF5 Native Lib Installed .............................   Check</li>\n",
    "      <li>NETCDF Native Lib Installed ...........................   Check</li>\n",
    "      <li>Python Module Cython Installed ........................   Check</li>\n",
    "      <li>Python Module H5PY Installed ..........................   Check</li>\n",
    "      <li>Python Module Numpy Installed .........................   Check</li>\n",
    "      <li>Python Module NETCDF4 with HDF5 support Installed .....   Check</li>\n",
    "      <li>Python Module pkg-config Installed ....................   Check</li></ol>\n",
    "  \n",
    "  Whew!\n",
    "</div>"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "# Let's work through the h5py Quick Start Guide\n",
    "[Quick Start Guide](http://docs.h5py.org/en/latest/quick.html)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 28,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "import h5py\n",
    "import numpy as np\n",
    "f = h5py.File(\"mytestfile1.hdf5\", \"w\")"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 29,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "dset = f.create_dataset(\"mydataset\", (100,), dtype='i')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 30,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
      "text/plain": [
       "(100,)"
      ]
     },
     "execution_count": 30,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "dset.shape"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 31,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
      "text/plain": [
       "dtype('int32')"
      ]
     },
     "execution_count": 31,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "dset.dtype"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 32,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "dset[...] = np.arange(100)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 33,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
      "text/plain": [
       "0"
      ]
     },
     "execution_count": 33,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "dset[0]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 34,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
      "text/plain": [
       "10"
      ]
     },
     "execution_count": 34,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "dset[10]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 35,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
      "text/plain": [
       "array([ 0, 10, 20, 30, 40, 50, 60, 70, 80, 90], dtype=int32)"
      ]
     },
     "execution_count": 35,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "dset[0:100:10]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 36,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
      "text/plain": [
       "u'/mydataset'"
      ]
     },
     "execution_count": 36,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "dset.name"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 37,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
      "text/plain": [
       "u'/'"
      ]
     },
     "execution_count": 37,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "f.name"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 38,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": [
    "grp = f.create_group(\"subgroup\")"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 39,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": [
    "dset2 = grp.create_dataset(\"another_dataset\", (50,), dtype='f')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 40,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
      "text/plain": [
       "u'/subgroup/another_dataset'"
      ]
     },
     "execution_count": 40,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "dset2.name"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 41,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": [
    "dset3 = f.create_dataset('subgroup2/dataset_three', (10,), dtype='i')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 42,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
      "text/plain": [
       "u'/subgroup2/dataset_three'"
      ]
     },
     "execution_count": 42,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "dset3.name"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 43,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "mydataset\n",
      "subgroup\n",
      "subgroup2\n"
     ]
    }
   ],
   "source": [
    "for name in f:\n",
    "    print name"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 44,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
      "text/plain": [
       "99.5"
      ]
     },
     "execution_count": 44,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "dset.attrs['temperature'] = 99.5\n",
    "dset.attrs['temperature']"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 45,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
      "text/plain": [
       "True"
      ]
     },
     "execution_count": 45,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "'temperature' in dset.attrs"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 46,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": [
    "f.close()"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "# Let's work through a few netCDF4 commands"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 47,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "netCDF 4.4.0\r\n"
     ]
    }
   ],
   "source": [
    "!$netcdfDir/netcdf/bin/nc-config --version  # --cflags"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 48,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
      "text/plain": [
       "u'4.4.0 of May 23 2016 00:44:04 $'"
      ]
     },
     "execution_count": 48,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "# standard imports\n",
    "import netCDF4 as nc\n",
    "import numpy as np\n",
    "from netCDF4 import Dataset\n",
    "np.set_printoptions(precision=3, linewidth=100, edgeitems=2)  # make numpy less verbose\n",
    "nc.getlibversion()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 49,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "NETCDF4\n"
     ]
    }
   ],
   "source": [
    "rootgrp = Dataset(\"test.nc\", \"w\", format=\"NETCDF4\")\n",
    "print rootgrp.data_model\n",
    "rootgrp.close()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 50,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "OrderedDict([('forecasts', <type 'netCDF4._netCDF4.Group'>\n",
      "group /forecasts:\n",
      "    dimensions(sizes): \n",
      "    variables(dimensions): \n",
      "    groups: \n",
      "), ('analyses', <type 'netCDF4._netCDF4.Group'>\n",
      "group /analyses:\n",
      "    dimensions(sizes): \n",
      "    variables(dimensions): \n",
      "    groups: \n",
      ")])\n"
     ]
    }
   ],
   "source": [
    "rootgrp = Dataset(\"test.nc\", \"a\")\n",
    "fcstgrp = rootgrp.createGroup(\"forecasts\")\n",
    "analgrp = rootgrp.createGroup(\"analyses\")\n",
    "print rootgrp.groups"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 51,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": [
    "fcstgrp1 = rootgrp.createGroup(\"/forecasts/model1\")\n",
    "fcstgrp2 = rootgrp.createGroup(\"/forecasts/model2\")"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 52,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "<type 'netCDF4._netCDF4.Dataset'>\n",
      "root group (NETCDF4 data model, file format HDF5):\n",
      "    dimensions(sizes): \n",
      "    variables(dimensions): \n",
      "    groups: forecasts, analyses\n",
      "\n",
      "<type 'netCDF4._netCDF4.Group'>\n",
      "group /forecasts:\n",
      "    dimensions(sizes): \n",
      "    variables(dimensions): \n",
      "    groups: model1, model2\n",
      "\n",
      "<type 'netCDF4._netCDF4.Group'>\n",
      "group /analyses:\n",
      "    dimensions(sizes): \n",
      "    variables(dimensions): \n",
      "    groups: \n",
      "\n",
      "<type 'netCDF4._netCDF4.Group'>\n",
      "group /forecasts/model1:\n",
      "    dimensions(sizes): \n",
      "    variables(dimensions): \n",
      "    groups: \n",
      "\n",
      "<type 'netCDF4._netCDF4.Group'>\n",
      "group /forecasts/model2:\n",
      "    dimensions(sizes): \n",
      "    variables(dimensions): \n",
      "    groups: \n",
      "\n"
     ]
    }
   ],
   "source": [
    "def walktree(top):\n",
    "    values = top.groups.values()\n",
    "    yield values\n",
    "    for value in top.groups.values():\n",
    "        for children in walktree(value):\n",
    "            yield children\n",
    "\n",
    "print rootgrp\n",
    "for children in walktree(rootgrp):\n",
    "    for child in children:\n",
    "        print child"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 53,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "OrderedDict([('level', <type 'netCDF4._netCDF4.Dimension'> (unlimited): name = 'level', size = 0\n",
      "), ('time', <type 'netCDF4._netCDF4.Dimension'> (unlimited): name = 'time', size = 0\n",
      "), ('lat', <type 'netCDF4._netCDF4.Dimension'>: name = 'lat', size = 73\n",
      "), ('lon', <type 'netCDF4._netCDF4.Dimension'>: name = 'lon', size = 144\n",
      ")])\n"
     ]
    }
   ],
   "source": [
    "level = rootgrp.createDimension(\"level\", None)\n",
    "time = rootgrp.createDimension(\"time\", None)\n",
    "lat = rootgrp.createDimension(\"lat\", 73)\n",
    "lon = rootgrp.createDimension(\"lon\", 144)\n",
    "print rootgrp.dimensions"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 54,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "144\n",
      "False\n",
      "True\n"
     ]
    }
   ],
   "source": [
    "print len(lon)\n",
    "print lon.isunlimited()\n",
    "print time.isunlimited()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 55,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "<type 'netCDF4._netCDF4.Dimension'> (unlimited): name = 'level', size = 0\n",
      "\n",
      "<type 'netCDF4._netCDF4.Dimension'> (unlimited): name = 'time', size = 0\n",
      "\n",
      "<type 'netCDF4._netCDF4.Dimension'>: name = 'lat', size = 73\n",
      "\n",
      "<type 'netCDF4._netCDF4.Dimension'>: name = 'lon', size = 144\n",
      "\n"
     ]
    }
   ],
   "source": [
    "for dimobj in rootgrp.dimensions.values():\n",
    "    print dimobj"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 56,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "<type 'netCDF4._netCDF4.Variable'>\n",
      "float32 temp(time, level, lat, lon)\n",
      "unlimited dimensions: time, level\n",
      "current shape = (0, 0, 73, 144)\n",
      "filling on, default _FillValue of 9.96920996839e+36 used\n",
      "\n"
     ]
    }
   ],
   "source": [
    "times = rootgrp.createVariable(\"time\",\"f8\",(\"time\",))\n",
    "levels = rootgrp.createVariable(\"level\",\"i4\",(\"level\",))\n",
    "latitudes = rootgrp.createVariable(\"latitude\",\"f4\",(\"lat\",))\n",
    "longitudes = rootgrp.createVariable(\"longitude\",\"f4\",(\"lon\"))\n",
    "temp = rootgrp.createVariable(\"temp\",\"f4\",(\"time\",\"level\",\"lat\",\"lon\",))\n",
    "print temp"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 57,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": [
    "ftemp = rootgrp.createVariable(\"/forecasts/model1/temp\",\"f4\",(\"time\",\"level\",\"lat\",\"lon\",))"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 58,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "<type 'netCDF4._netCDF4.Group'>\n",
      "group /forecasts/model1:\n",
      "    dimensions(sizes): \n",
      "    variables(dimensions): float32 \u001b[4mtemp\u001b[0m(time,level,lat,lon)\n",
      "    groups: \n",
      "\n",
      "<type 'netCDF4._netCDF4.Variable'>\n",
      "float32 temp(time, level, lat, lon)\n",
      "path = /forecasts/model1\n",
      "unlimited dimensions: time, level\n",
      "current shape = (0, 0, 73, 144)\n",
      "filling on, default _FillValue of 9.96920996839e+36 used\n",
      "\n"
     ]
    }
   ],
   "source": [
    "print rootgrp[\"/forecasts/model1\"]\n",
    "print rootgrp[\"/forecasts/model1/temp\"]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 59,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "OrderedDict([('time', <type 'netCDF4._netCDF4.Variable'>\n",
      "float64 time(time)\n",
      "unlimited dimensions: time\n",
      "current shape = (0,)\n",
      "filling on, default _FillValue of 9.96920996839e+36 used\n",
      "), ('level', <type 'netCDF4._netCDF4.Variable'>\n",
      "int32 level(level)\n",
      "unlimited dimensions: level\n",
      "current shape = (0,)\n",
      "filling on, default _FillValue of -2147483647 used\n",
      "), ('latitude', <type 'netCDF4._netCDF4.Variable'>\n",
      "float32 latitude(lat)\n",
      "unlimited dimensions: \n",
      "current shape = (73,)\n",
      "filling on, default _FillValue of 9.96920996839e+36 used\n",
      "), ('longitude', <type 'netCDF4._netCDF4.Variable'>\n",
      "float32 longitude(lon)\n",
      "unlimited dimensions: \n",
      "current shape = (144,)\n",
      "filling on, default _FillValue of 9.96920996839e+36 used\n",
      "), ('temp', <type 'netCDF4._netCDF4.Variable'>\n",
      "float32 temp(time, level, lat, lon)\n",
      "unlimited dimensions: time, level\n",
      "current shape = (0, 0, 73, 144)\n",
      "filling on, default _FillValue of 9.96920996839e+36 used\n",
      ")])\n"
     ]
    }
   ],
   "source": [
    "print rootgrp.variables"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 60,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": [
    "import time\n",
    "rootgrp.description = \"bogus example script\"\n",
    "rootgrp.history = \"Created \" + time.ctime(time.time())\n",
    "rootgrp.source = \"netCDF4 python module tutorial from unidata.github.io\"\n",
    "latitudes.units = \"degrees north\"\n",
    "longitudes.units = \"degrees east\"\n",
    "levels.units = \"hPa\"\n",
    "temp.units = \"K\"\n",
    "times.units = \"hours since 0001-01-01 00:00:00.0\"\n",
    "times.calendar = \"gregorian\""
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 61,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Global attr description = bogus example script\n",
      "Global attr history = Created Mon May 23 00:58:27 2016\n",
      "Global attr source = netCDF4 python module tutorial from unidata.github.io\n"
     ]
    }
   ],
   "source": [
    "for name in rootgrp.ncattrs():\n",
    "    print \"Global attr\", name, \"=\", getattr(rootgrp,name)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 62,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "OrderedDict([(u'description', u'bogus example script'), (u'history', u'Created Mon May 23 00:58:27 2016'), (u'source', u'netCDF4 python module tutorial from unidata.github.io')])\n"
     ]
    }
   ],
   "source": [
    "print rootgrp.__dict__"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 63,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "latitudes =\n",
      "[-90.  -87.5 -85.  -82.5 -80.  -77.5 -75.  -72.5 -70.  -67.5 -65.  -62.5 -60.  -57.5 -55.  -52.5\n",
      " -50.  -47.5 -45.  -42.5 -40.  -37.5 -35.  -32.5 -30.  -27.5 -25.  -22.5 -20.  -17.5 -15.  -12.5\n",
      " -10.   -7.5  -5.   -2.5   0.    2.5   5.    7.5  10.   12.5  15.   17.5  20.   22.5  25.   27.5\n",
      "  30.   32.5  35.   37.5  40.   42.5  45.   47.5  50.   52.5  55.   57.5  60.   62.5  65.   67.5\n",
      "  70.   72.5  75.   77.5  80.   82.5  85.   87.5  90. ]\n"
     ]
    }
   ],
   "source": [
    "lats = np.arange(-90,91,2.5)\n",
    "lons = np.arange(-180,180,2.5)\n",
    "latitudes[:] = lats\n",
    "longitudes[:] = lons\n",
    "print \"latitudes =\\n\",latitudes[:]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 64,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "temp shape before adding data =  (0, 0, 73, 144)\n"
     ]
    }
   ],
   "source": [
    "#append along two unlimited dimensions by assign to slice\n",
    "nlats = len(rootgrp.dimensions[\"lat\"])\n",
    "nlons = len(rootgrp.dimensions[\"lon\"])\n",
    "print \"temp shape before adding data = \", temp.shape"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 65,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "temp shape after adding data =  (5, 10, 73, 144)\n"
     ]
    }
   ],
   "source": [
    "from numpy.random import uniform\n",
    "temp[0:5,0:10,:,:] = uniform(size=(5,10,nlats,nlons))\n",
    "print \"temp shape after adding data = \",temp.shape"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 66,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "levels shape after adding pressure data =  (10,)\n"
     ]
    }
   ],
   "source": [
    "# levels have grown, but no values yet assigned\n",
    "print \"levels shape after adding pressure data = \", levels.shape"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 67,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "shape of fancy temp slice =  (3, 3, 36, 71)\n"
     ]
    }
   ],
   "source": [
    "# now, assign data to levels dimension variable\n",
    "levels[:] = [1000.,850.,700.,500.,300.,250.,200.,150.,10.,50.]\n",
    "temp[0, 0, [0,1,2,3], [0,1,2,3]]\n",
    "tempdat = temp[::2, [1,3,6], lats>0, lons>0]\n",
    "print \"shape of fancy temp slice = \", tempdat.shape"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 68,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "time values (in units hours since 0001-01-01 00:00:00.0): \n",
      "[ 17533104.  17533116.  17533128.  17533140.  17533152.]\n"
     ]
    }
   ],
   "source": [
    "# fill in times\n",
    "from datetime import datetime, timedelta\n",
    "from netCDF4 import num2date, date2num\n",
    "dates = [datetime(2001,3,1)+n*timedelta(hours=12) for n in range(temp.shape[0])]\n",
    "times[:] = date2num(dates, units=times.units,calendar=times.calendar)\n",
    "print \"time values (in units %s): \" % times.units+\"\\n\",times[:]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 69,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "dates corresponding to time values:\n",
      "[datetime.datetime(2001, 3, 1, 0, 0) datetime.datetime(2001, 3, 1, 12, 0)\n",
      " datetime.datetime(2001, 3, 2, 0, 0) datetime.datetime(2001, 3, 2, 12, 0)\n",
      " datetime.datetime(2001, 3, 3, 0, 0)]\n"
     ]
    }
   ],
   "source": [
    "dates = num2date(times[:],units=times.units,calendar=times.calendar)\n",
    "print \"dates corresponding to time values:\\n\",dates"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 70,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "for nf in range(10):\n",
    "    myFile =  Dataset(\"mftest%s.nc\" % nf,\"w\",format=\"NETCDF4_CLASSIC\")\n",
    "    myFile.createDimension(\"q\",None)\n",
    "    x = myFile.createVariable(\"q\",\"i\",(\"q\",))\n",
    "    x[0:10] = np.arange(nf*10,10*(nf+1))\n",
    "    while myFile.isopen():\n",
    "        myFile.close()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 71,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "[ 0  1  2  3  4  5  6  7  8  9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32\n",
      " 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65\n",
      " 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98\n",
      " 99]\n"
     ]
    }
   ],
   "source": [
    "from netCDF4 import MFDataset\n",
    "# MFNetCDF4 only works with NETCDF3_* and NETCDF4_CLASSIC formatted files, not NETCDF4\n",
    "aggFile = MFDataset(\"mftest*nc\")\n",
    "print aggFile.variables[\"q\"][:]\n",
    "aggFile.close()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 72,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "<type 'netCDF4._netCDF4.Variable'>\n",
      "float32 temp3(time, level, lat, lon)\n",
      "    least_significant_digit: 3\n",
      "unlimited dimensions: time, level\n",
      "current shape = (5, 10, 73, 144)\n",
      "filling on, default _FillValue of 9.96920996839e+36 used\n",
      "\n"
     ]
    }
   ],
   "source": [
    "temp3 = rootgrp.createVariable(\"temp3\",\"f4\",(\"time\",\"level\",\"lat\",\"lon\",), zlib=True, least_significant_digit=3)\n",
    "print temp3"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 73,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "complex128 [ 0.540+0.841j -0.841+0.54j  -0.540-0.841j]\n",
      "complex128 [ 0.540+0.j -0.841+0.j -0.540+0.j]\n"
     ]
    }
   ],
   "source": [
    "compoundFile = Dataset(\"complex.nc\", \"w\")\n",
    "size = 3 # length of 1-d complex array\n",
    "# create sample complex data\n",
    "datac = np.exp(1j*(1.+np.linspace(0, np.pi, size)))\n",
    "# create complex128 compound data type.\n",
    "complex128 = np.dtype([(\"real\", np.float64),(\"imag\",np.float64)])\n",
    "complex128_t = compoundFile.createCompoundType(complex128,\"complex128\")\n",
    "# create a variable with this data type, write some data to it.\n",
    "compoundFile.createDimension(\"x_dim\",None)\n",
    "v = compoundFile.createVariable(\"cmplx_var\", complex128_t, \"x_dim\")\n",
    "data = np.empty(size,complex128) # numpy structured array\n",
    "data[\"real\"] = datac.real\n",
    "data[\"imag\"] = data.imag\n",
    "v[:] = data # write numpy structured array to netcdf compound var\n",
    "# close and reopen the file, check the contents\n",
    "compoundFile.close()\n",
    "compoundFile = Dataset(\"complex.nc\")\n",
    "v = compoundFile.variables[\"cmplx_var\"]\n",
    "datain = v[:] # read in all the data into a numpy structured array\n",
    "# create an emtpy numpy complex array\n",
    "datac2 = np.empty(datain.shape,np.complex128)\n",
    "# .. fill it with contexts of structured array\n",
    "datac2.real = datain[\"real\"]\n",
    "datac2.imag = datain[\"imag\"]\n",
    "print datac.dtype,datac\n",
    "print datac2.dtype,datac2 # data from file"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 74,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "<type 'netCDF4._netCDF4.Dataset'>\n",
      "root group (NETCDF4 data model, file format HDF5):\n",
      "    dimensions(sizes): x_dim(3)\n",
      "    variables(dimensions): {'names':[u'real',u'imag'], 'formats':['<f8','<f8'], 'offsets':[0,8], 'itemsize':16, 'aligned':True} \u001b[4mcmplx_var\u001b[0m(x_dim)\n",
      "    groups: \n",
      "\n"
     ]
    }
   ],
   "source": [
    "print compoundFile"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 75,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "<type 'netCDF4._netCDF4.Variable'>\n",
      "compound cmplx_var(x_dim)\n",
      "compound data type: {'names':[u'real',u'imag'], 'formats':['<f8','<f8'], 'offsets':[0,8], 'itemsize':16, 'aligned':True}\n",
      "unlimited dimensions: x_dim\n",
      "current shape = (3,)\n",
      "\n"
     ]
    }
   ],
   "source": [
    "print compoundFile.variables[\"cmplx_var\"]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 76,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "OrderedDict([(u'complex128', <type 'netCDF4._netCDF4.CompoundType'>: name = 'complex128', numpy dtype = {'names':[u'real',u'imag'], 'formats':['<f8','<f8'], 'offsets':[0,8], 'itemsize':16, 'aligned':True}\n",
      ")])\n"
     ]
    }
   ],
   "source": [
    "print compoundFile.cmptypes"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 77,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "<type 'netCDF4._netCDF4.CompoundType'>: name = 'complex128', numpy dtype = {'names':[u'real',u'imag'], 'formats':['<f8','<f8'], 'offsets':[0,8], 'itemsize':16, 'aligned':True}\n",
      "\n"
     ]
    }
   ],
   "source": [
    "print compoundFile.cmptypes[\"complex128\"]\n",
    "compoundFile.close()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 78,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "varFile = Dataset(\"ts_vlen.nc\",\"w\")\n",
    "vlen_t = varFile.createVLType(np.int32, \"phony_vlen\")"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 79,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "x = varFile.createDimension(\"x\",3)\n",
    "y = varFile.createDimension(\"y\",4)\n",
    "vlvar = varFile.createVariable(\"phony_vlen_var\", vlen_t,(\"y\",\"x\"))"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 80,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "vlen variable =\n",
      "[[array([1, 2], dtype=int32) array([1], dtype=int32) array([1, 2, 3, 4, 5, 6, 7, 8], dtype=int32)]\n",
      " [array([1, 2, 3, 4, 5, 6], dtype=int32) array([1, 2, 3], dtype=int32) array([1, 2, 3], dtype=int32)]\n",
      " [array([1, 2, 3, 4], dtype=int32) array([1, 2, 3, 4, 5, 6, 7, 8], dtype=int32)\n",
      "  array([1, 2, 3, 4, 5, 6, 7], dtype=int32)]\n",
      " [array([1, 2, 3, 4, 5], dtype=int32) array([1, 2], dtype=int32)\n",
      "  array([1, 2, 3, 4, 5, 6], dtype=int32)]]\n"
     ]
    }
   ],
   "source": [
    "import random\n",
    "data = np.empty(len(y)*len(x),object)\n",
    "for n in range(len(y)*len(x)):\n",
    "    data[n] = np.arange(random.randint(1,10),dtype=\"int32\")+1\n",
    "\n",
    "data = np.reshape(data,(len(y),len(x)))\n",
    "vlvar[:] = data\n",
    "print \"vlen variable =\\n\",vlvar[:]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 81,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "<type 'netCDF4._netCDF4.Variable'>\n",
      "vlen phony_vlen_var(y, x)\n",
      "vlen data type: int32\n",
      "unlimited dimensions: \n",
      "current shape = (4, 3)\n",
      "\n"
     ]
    }
   ],
   "source": [
    "print varFile.variables[\"phony_vlen_var\"]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": []
  }
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