Gap-filling for AGORA models

[shraddhakhirwadkar]

Hi,
I wanted to use GapSeq to gap-fill AGORA models. I was following the tutorial: https://gapseq.readthedocs.io/en/latest/tutorials/crossfeeding.html and I was wondering what I could use as rxnWeights.RDS and rxnXgenes.RDS if I am just interested in gap-filling an already existing metabolic model. Any help is appreciated!
Thank you,
Shraddha Khirwadkar

[Waschina]

Hi Shraddha,
the gapfilling algorithm of gapseq does only work with gapseq reconstructions, because it relies on outputs from the upstream gapseq command gapseq draft.
Best,
Silvio