Python API/Reference Docs

Modules

rnaseqflow is composed of three modules:

`main <rnaseqflow.main>`

Provides the entry point for the executable in the function main() and argument parsing in opts()

modules/module_main

Provides several classes that are used to execute a series of preprocessing steps on RNAseq data

modules/module_workflow

Provides a class that can intelligently ask the user to provide arguments if the required arguments were not provided at the command line

modules/module_cliutils