Scripts.rst

Scripts

This is the entry point for our code, it calls all other relevant functions.

Run_main

.. toggle-header::
    :header: **Code**

    .. literalinclude:: ../Matlab/Run_main.m
       :language: matlab
       :linenos:

This is the main script from the MATLAB|Reg| portion of the workflow. Depending on the configurations on the :ref:`settings file<f_settings>` and choices on the user facing prompts it can call functions to:

• :ref:`Perform conversions of the SBtab:<functions_import>`
  • SBtab( .xlsx) to SBtab (.tsv)
  • SBtab (.xlsx) to MATLAB|Reg| SimBiology|Reg| (.m, .sbproj)
  • MATLAB|Reg| SimBiology|Reg| to SBML (.xml)
• :ref:`Perform analysis on the model:<functions_analysis>`
  • Diagnostics
  • Parameter Estimation
  • Global Sensitivity Analysis
• :ref:`Saving results from analysis<f_save_analysis>`
• :ref:`Plotting relevant results<f_plot>`
• :ref:`Saving plots<f_save_plots>`

It can also reproduce a the calculations of a previous analysis or just its plots.