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bedtools version #15

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outpaddling opened this issue Dec 1, 2015 · 2 comments
Closed

bedtools version #15

outpaddling opened this issue Dec 1, 2015 · 2 comments

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@outpaddling
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Is it really necessary to use bedtools 2.23.0, or should the latest version work as well?

I see the note about the latest vcftools lacking certain options, but couldn't find an explanation of why bedtools 2.23.0 should be required.

Thanks,

Jason
@jpuritz
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jpuritz commented Dec 7, 2015

It is necessary. Bedtools changed the output of the coverage tool which is used for interval setting for dDocent. Most versions before 2.23.0 will work, but none after will.

@jpuritz jpuritz closed this as completed Dec 7, 2015
@outpaddling
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outpaddling commented Dec 7, 2015 via email

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@jpuritz @outpaddling