R-CMD-check.yaml

# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
# Additional formatting taken from: https://github.com/r-lib/actions/blob/v2-branch/check-r-package/action.yaml

on:
  push:
    branches:
      - dev
      - main

name: R-CMD-check

jobs:
  R-CMD-check:
    runs-on: ${{ matrix.config.os }}

    name: ${{ matrix.config.os }} (${{ matrix.config.r }})

    strategy:
      fail-fast: false
      matrix:
        config:
          - {os: macos-latest,   r: 'release'}
          - {os: windows-latest, r: 'release'}
          - {os: ubuntu-latest,   r: 'release'}

    env:
      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
      R_KEEP_PKG_SOURCE: yes

    steps:
      - name: Checkout repo
        uses: actions/checkout@v3
      - name: Setup Pandoc
        uses: r-lib/actions/setup-pandoc@v2
      - name: Setup R
        uses: r-lib/actions/setup-r@v2
        with:
          r-version: ${{ matrix.config.r }}
          http-user-agent: ${{ matrix.config.http-user-agent }}
          use-public-rspm: true
      - name: Setup dependencies
        uses: r-lib/actions/setup-r-dependencies@v2
        with:
          extra-packages: any::rcmdcheck
          needs: check
      - name: Extra dependencies
        id: extra-deps
        run: |
          install.packages("Matrix", type = "source", force = TRUE)
          install.packages("irlba", type = "source", force = TRUE)
          install.packages("TMB", type = "source", force = TRUE)
          install.packages("glmmTMB", type = "source", force = TRUE)
        shell: Rscript {0}
        working-directory: '.'
      - name: Check
        id: rcmdcheck
        run: |
          ## --------------------------------------------------------------------
          options(crayon.enabled = TRUE)
          cat("check-dir-path=", file.path(getwd(), "check"), "\n", file = Sys.getenv("GITHUB_OUTPUT"), sep = "", append = TRUE)
          check_results <- rcmdcheck::rcmdcheck(args = c("--no-vignettes", "--no-manual", "--as-cran"), build_args = c("--no-build-vignettes", "--no-manual"), check_dir = "check", error_on = "error")
        shell: Rscript {0}
        working-directory: '.'
      - name: Show testthat output
        if: always()
        run: |
          ## --------------------------------------------------------------------
          echo ::group::Show testthat output
          find check -name 'testthat.Rout*' -exec cat '{}' \; || true
          echo ::endgroup::
        shell: bash
        working-directory: '.'
      - name: Upload check results
        if: failure()
        uses: actions/upload-artifact@v3
        with:
          name: ${{ runner.os }}-r${{ matrix.config.r }}-results
          path: ${{ steps.rcmdcheck.outputs.check-dir-path }}
      - name: Upload snapshots
        uses: actions/upload-artifact@v3
        with:
          name: ${{ runner.os }}-r${{ matrix.config.r }}-testthat-snapshots
          path: ${{ steps.rcmdcheck.outputs.check-dir-path }}/**/tests*/testthat/_snaps
          if-no-files-found: ignore