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codegen.py
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codegen.py
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# This file is part of QuTiP.
#
# QuTiP is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# QuTiP is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with QuTiP. If not, see <http://www.gnu.org/licenses/>.
#
# Copyright (C) 2011 and later, Paul D. Nation & Robert J. Johansson
#
###########################################################################
import numpy as np
class Codegen():
"""
Class for generating cython code files at runtime.
"""
def __init__(self, h_terms=None, h_tdterms=None, h_td_inds=None,
args=None, c_terms=None, c_tdterms=[], c_td_inds=None,
tab="\t", type='me', odeconfig=None):
import sys
import os
sys.path.append(os.getcwd())
#--------------------------------------------#
# CLASS PROPERTIES #
#--------------------------------------------#
#--- Hamiltonian time-depdendent pieces ----#
self.type = type
if isinstance(h_terms, int):
h_terms = range(h_terms)
self.h_terms = h_terms # number of H pieces
self.h_tdterms = h_tdterms # list of time-dependent strings
self.h_td_inds = h_td_inds # indicies of time-dependnt terms
self.args = args # args for strings
#--- Collapse operator time-depdendent pieces ----#
self.c_terms = c_terms # number of C pieces
self.c_tdterms = c_tdterms # list of time-dependent strings
self.c_td_inds = c_td_inds # indicies of time-dependnt terms
#--- Code generator properties----#
self.code = [] # strings to be written to file
self.tab = tab # type of tab to use
self.level = 0 # indent level
# math functions available from numpy
# add a '(' on the end to guarentee function is selected
self.func_list = [func + '(' for func in dir(np.math)[4:-1]]
# fix pi and e strings since they are constants and not functions
self.func_list[self.func_list.index('pi(')] = 'pi'
# store odeconfig instance
self.odeconfig = odeconfig
#--------------------------------------------#
# CLASS METHODS #
#--------------------------------------------#
def write(self, string):
"""write lines of code to self.code"""
self.code.append(self.tab * self.level + string + "\n")
def file(self, filename):
"""open file called filename for writing"""
self.file = open(filename, "w")
def generate(self, filename="rhs.pyx"):
"""generate the file"""
self.time_vars()
for line in cython_preamble():
self.write(line)
# write function for Hamiltonian terms (there is always at least one
# term)
for line in cython_checks() + self.ODE_func_header():
self.write(line)
self.indent()
for line in self.func_vars():
self.write(line)
for line in self.func_for():
self.write(line)
self.write(self.func_end())
self.dedent()
#if self.type == 'mc':
# for line in cython_checks() + cython_spmv():
# self.write(line)
# generate collapse operator functions if any c_terms
if any(self.c_tdterms):
for line in (cython_checks() + self.col_spmv_header() +
cython_col_spmv()):
self.write(line)
self.indent()
for line in self.func_which():
self.write(line)
self.write(self.func_end())
self.dedent()
for line in (cython_checks() + self.col_expect_header() +
cython_col_expect(self.args)):
self.write(line)
self.indent()
for line in self.func_which_expect():
self.write(line)
self.write(self.func_end_real())
self.dedent()
self.file(filename)
self.file.writelines(self.code)
self.file.close()
self.odeconfig.cgen_num += 1
def indent(self):
"""increase indention level by one"""
self.level += 1
def dedent(self):
"""decrease indention level by one"""
if self.level == 0:
raise SyntaxError("Error in code generator")
self.level -= 1
def ODE_func_header(self):
"""Creates function header for time-dependent ODE RHS."""
func_name = "def cyq_td_ode_rhs("
# strings for time and vector variables
input_vars = "double t, np.ndarray[CTYPE_t, ndim=1] vec"
for k in self.h_terms:
input_vars += (", np.ndarray[CTYPE_t, ndim=1] data" + str(k) +
", np.ndarray[int, ndim=1] idx" + str(k) +
", np.ndarray[int, ndim=1] ptr" + str(k))
if any(self.c_tdterms):
for k in range(len(self.h_terms),
len(self.h_terms) + len(self.c_tdterms)):
input_vars += (", np.ndarray[CTYPE_t, ndim=1] data" + str(k) +
", np.ndarray[int, ndim=1] idx" + str(k) +
", np.ndarray[int, ndim=1] ptr" + str(k))
if self.args:
td_consts = list(self.args.items())
td_len = len(td_consts)
for jj in range(td_len):
kind = type(td_consts[jj][1]).__name__
input_vars += ", np." + kind + "_t" + " " + td_consts[jj][0]
func_end = "):"
return [func_name + input_vars + func_end]
#----
def col_spmv_header(self):
"""
Creates function header for time-dependent
collapse operator terms.
"""
func_name = "def col_spmv("
input_vars = ("int which, double t, np.ndarray[CTYPE_t, ndim=1] " +
"data, np.ndarray[int] idx,np.ndarray[int] " +
"ptr,np.ndarray[CTYPE_t, ndim=1] vec")
if len(self.args) > 0:
td_consts = list(self.args.items())
td_len = len(td_consts)
for jj in range(td_len):
kind = type(td_consts[jj][1]).__name__
input_vars += ", np." + kind + "_t" + " " + td_consts[jj][0]
func_end = "):"
return [func_name + input_vars + func_end]
#----
def col_expect_header(self):
"""
Creates function header for time-dependent
collapse expectation values.
"""
func_name = "def col_expect("
input_vars = ("int which, double t, np.ndarray[CTYPE_t, ndim=1] " +
"data, np.ndarray[int] idx,np.ndarray[int] " +
"ptr,np.ndarray[CTYPE_t, ndim=1] vec")
if len(self.args) > 0:
td_consts = list(self.args.items())
td_len = len(td_consts)
for jj in range(td_len):
kind = type(td_consts[jj][1]).__name__
input_vars += ", np." + kind + "_t" + " " + td_consts[jj][0]
func_end = "):"
return [func_name + input_vars + func_end]
#----
def time_vars(self):
"""
Rewrites time-dependent parts to include np.
"""
if self.h_tdterms:
for jj in range(len(self.h_tdterms)):
text = self.h_tdterms[jj]
any_np = np.array([text.find(x) for x in self.func_list])
ind = np.nonzero(any_np > -1)[0]
for kk in ind:
new_text = 'np.' + self.func_list[kk]
text = text.replace(self.func_list[kk], new_text)
self.h_tdterms[jj] = text
if len(self.c_tdterms) > 0:
for jj in range(len(self.c_tdterms)):
text = self.c_tdterms[jj]
any_np = np.array([text.find(x) for x in self.func_list])
ind = np.nonzero(any_np > -1)[0]
for kk in ind:
new_text = 'np.' + self.func_list[kk]
text = text.replace(self.func_list[kk], new_text)
self.c_tdterms[jj] = text
def func_vars(self):
"""Writes the variables and their types & spmv parts"""
func_vars = ["", 'cdef Py_ssize_t row', 'cdef int num_rows = len(vec)',
'cdef np.ndarray[CTYPE_t, ndim=1] ' +
'out = np.zeros((num_rows),dtype=np.complex)']
func_vars.append(" ")
tdterms = self.h_tdterms
hinds = 0
for ht in self.h_terms:
hstr = str(ht)
if self.type == 'mc':
str_out = ("cdef np.ndarray[CTYPE_t, ndim=1] Hvec" + hstr +
" = " + "spmv(data" + hstr + "," +
"idx" + hstr + "," + "ptr" + hstr +
"," + "vec" + ")")
if ht in self.h_td_inds:
str_out += " * " + tdterms[hinds]
hinds += 1
func_vars.append(str_out)
else:
if self.h_tdterms[ht] == "1.0":
str_out = "spmvpy(data%s, idx%s, ptr%s, vec, 1.0, out)" % (
ht, ht, ht)
else:
str_out = "spmvpy(data%s, idx%s, ptr%s, vec, %s, out)" % (
ht, ht, ht, self.h_tdterms[ht])
func_vars.append(str_out)
if len(self.c_tdterms) > 0:
# add a spacer line between Hamiltonian components and collapse
# components.
func_vars.append(" ")
terms = len(self.c_tdterms)
tdterms = self.c_tdterms
cinds = 0
for ct in range(terms):
cstr = str(ct + hinds + 1)
str_out = ("cdef np.ndarray[CTYPE_t, ndim=1] Cvec" + str(ct) +
" = " + "spmv(data" + cstr + "," +
"idx" + cstr + "," +
"ptr" + cstr + "," + "vec" + ")")
if ct in range(len(self.c_td_inds)):
str_out += " * np.abs(" + tdterms[ct] + ")**2"
cinds += 1
func_vars.append(str_out)
return func_vars
def func_for(self):
"""Writes function for-loop"""
func_terms = []
if self.type == 'mc':
func_terms.append("for row in range(num_rows):")
sum_string = "\tout[row] = Hvec0[row]"
for ht in range(1, len(self.h_terms)):
sum_string += " + Hvec" + str(ht) + "[row]"
if any(self.c_tdterms):
for ct in range(len(self.c_tdterms)):
sum_string += " + Cvec" + str(ct) + "[row]"
func_terms.append(sum_string)
return func_terms
def func_which(self):
"""Writes 'else-if' statements forcollapse operator eval function"""
out_string = []
ind = 0
for k in self.c_td_inds:
out_string.append("if which == " + str(k) + ":")
out_string.append("\tout*= " + self.c_tdterms[ind])
ind += 1
return out_string
def func_which_expect(self):
"""Writes 'else-if' statements for collapse expect function
"""
out_string = []
ind = 0
for k in self.c_td_inds:
out_string.append("if which == " + str(k) + ":")
out_string.append("\tout*= np.conj(" + self.c_tdterms[ind] + ")")
ind += 1
return out_string
def func_end(self):
return "return out"
def func_end_real(self):
return "return np.float64(np.real(out))"
def cython_preamble():
"""
Returns list of strings for standard Cython file preamble.
"""
line0 = ("# This file is generated automatically by QuTiP. " +
"(C) 2011-2013 Paul D. Nation & J. R. Johansson")
line1 = "import numpy as np"
line2 = "cimport numpy as np"
line3 = "cimport cython"
line4 = "from qutip.cyQ.spmatfuncs import spmv, spmvpy"
line5 = ""
line6 = "ctypedef np.complex128_t CTYPE_t"
line7 = "ctypedef np.float64_t DTYPE_t"
return [line0, line1, line2, line3, line4, line5, line6, line7]
def cython_checks():
"""
List of strings that turn off Cython checks.
"""
line0 = ""
line1 = ""
line2 = "@cython.boundscheck(False)"
line3 = "@cython.wraparound(False)"
return [line0, line1, line2, line3]
def cython_col_spmv():
"""
Writes col_SPMV vars.
"""
line1 = "\tcdef Py_ssize_t row"
line2 = "\tcdef int jj,row_start,row_end"
line3 = "\tcdef int num_rows=len(vec)"
line4 = "\tcdef CTYPE_t dot"
line5 = ("\tcdef np.ndarray[CTYPE_t, ndim=1] out = " +
"np.zeros((num_rows),dtype=np.complex)")
line6 = "\tfor row in range(num_rows):"
line7 = "\t\tdot=0.0"
line8 = "\t\trow_start = ptr[row]"
line9 = "\t\trow_end = ptr[row+1]"
lineA = "\t\tfor jj in range(row_start,row_end):"
lineB = "\t\t\tdot=dot+data[jj]*vec[idx[jj]]"
lineC = "\t\tout[row]=dot"
return [line1, line2, line3, line4, line5, line6, line7, line8,
line9, lineA, lineB, lineC]
def cython_col_expect(args):
"""
Writes col_expect vars.
"""
line1 = "\tcdef Py_ssize_t row"
line2 = "\tcdef int num_rows=len(vec)"
line3 = "\tcdef CTYPE_t out = 0.0"
line4 = "\tcdef np.ndarray[CTYPE_t, ndim=1] vec_ct = vec.conj()"
line5 = ("\tcdef np.ndarray[CTYPE_t, ndim=1] dot = " +
"col_spmv(which,t,data,idx,ptr,vec")
if args:
for td_const in args.items():
line5 += "," + td_const[0]
line5 += ")"
line6 = "\tfor row in range(num_rows):"
line7 = "\t\tout+=vec_ct[row]*dot[row]"
return [line1, line2, line3, line4, line5, line6, line7]