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Hi,
The d-sep claims from BasiSet function are not the one that are tested with the psem function
Pilosella.DAG <- DAG(Rec_tot__A_num ~ Altitude, SLA ~ Altitude + Rec_tot__A_num, Haut_veg ~ Nb_stol + SLA + Altitude, Nb_stol ~ Altitude + SLA + Rec_tot__A_num, Nb_cap ~ Nb_stol + Altitude + SLA + Rec_tot__A_num, nb_fruits ~ Nb_stol + Nb_cap + Haut_veg, fruits_plant ~ nb_fruits + Nb_stol + Nb_cap + Haut_veg + Altitude + SLA) basiSet(Pilosella.DAG)
[[1]] [1] "Altitude" "nb_fruits" "Nb_stol" "Nb_cap" "Haut_veg"
[[2]] [1] "Rec_tot__A_num" "Haut_veg" "Altitude" "SLA" "Nb_stol"
[[3]] [1] "Rec_tot__A_num" "nb_fruits" "Altitude" "Nb_stol" "Nb_cap" "Haut_veg"
[[4]] [1] "Rec_tot__A_num" "fruits_plant" "Altitude" "SLA" "Nb_stol" "Nb_cap" "Haut_veg" "nb_fruits"
[[5]] [1] "SLA" "nb_fruits" "Altitude" "Rec_tot__A_num" "Nb_stol" "Nb_cap" "Haut_veg"
[[6]] [1] "Nb_cap" "Haut_veg" "Altitude" "Rec_tot__A_num" "SLA" "Nb_stol"
The line [[6]] would then be a bad independance claim. It should be : Haut_veg ~ Nb_cap + Altitude + SLA + Nb_stol + Rec_tot__A_num
Independ.Claim Test.Type DF Crit.Value P.Value nb_fruits ~ Altitude + Haut_veg + Nb_stol + Nb_cap coef 379 0.5628 0.5739 fruits_plant ~ Altitude + SLA + Haut_veg + Nb_stol + Nb_cap + nb_fruits coef 377 -0.8765 0.3813 Haut_veg ~ Rec_tot__A_num + Altitude + SLA + Nb_stol coef 379 1.0874 0.2776 nb_fruits ~ Rec_tot__A_num + Altitude + Haut_veg + Nb_stol + Nb_cap coef 378 1.4790 0.1400
fruits_plant ~ Rec_tot__A_num + Altitude + SLA + Haut_veg + Nb_stol + Nb_cap + nb_fruits coef 376 0.2305 0.8178 nb_fruits ~ SLA + Altitude + Rec_tot__A_num + Haut_veg + Nb_stol + Nb_cap coef 377 -1.6421 0.1014 [[6]] Nb_cap ~ Haut_veg + Altitude + SLA + Nb_stol + Rec_tot__A_num coef 378 0.3860 0.6997
Am I right to determine the p value of my dag by doing C test by hand like this? C.stat<--2*sum(log(p.values)) 1-pchisq(C.stat,14)
Thank you
The text was updated successfully, but these errors were encountered:
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Hi,
The d-sep claims from BasiSet function are not the one that are tested with the psem function
Pilosella.DAG <- DAG(Rec_tot__A_num ~ Altitude,
SLA ~ Altitude + Rec_tot__A_num,
Haut_veg ~ Nb_stol + SLA + Altitude,
Nb_stol ~ Altitude + SLA + Rec_tot__A_num,
Nb_cap ~ Nb_stol + Altitude + SLA + Rec_tot__A_num,
nb_fruits ~ Nb_stol + Nb_cap + Haut_veg,
fruits_plant ~ nb_fruits + Nb_stol + Nb_cap + Haut_veg + Altitude + SLA)
basiSet(Pilosella.DAG)
[[1]]
[1] "Altitude" "nb_fruits" "Nb_stol" "Nb_cap" "Haut_veg"
[[2]]
[1] "Rec_tot__A_num" "Haut_veg" "Altitude" "SLA" "Nb_stol"
[[3]]
[1] "Rec_tot__A_num" "nb_fruits" "Altitude" "Nb_stol" "Nb_cap" "Haut_veg"
[[4]]
[1] "Rec_tot__A_num" "fruits_plant" "Altitude" "SLA" "Nb_stol" "Nb_cap" "Haut_veg" "nb_fruits"
[[5]]
[1] "SLA" "nb_fruits" "Altitude" "Rec_tot__A_num" "Nb_stol" "Nb_cap" "Haut_veg"
[[6]]
[1] "Nb_cap" "Haut_veg" "Altitude" "Rec_tot__A_num" "SLA" "Nb_stol"
The line [[6]] would then be a bad independance claim. It should be : Haut_veg ~ Nb_cap + Altitude + SLA + Nb_stol + Rec_tot__A_num
fruits_plant ~ Rec_tot__A_num + Altitude + SLA + Haut_veg + Nb_stol + Nb_cap + nb_fruits coef 376 0.2305 0.8178
nb_fruits ~ SLA + Altitude + Rec_tot__A_num + Haut_veg + Nb_stol + Nb_cap coef 377 -1.6421 0.1014
[[6]] Nb_cap ~ Haut_veg + Altitude + SLA + Nb_stol + Rec_tot__A_num coef 378 0.3860 0.6997
Am I right to determine the p value of my dag by doing C test by hand like this?
C.stat<--2*sum(log(p.values))
1-pchisq(C.stat,14)
Thank you
The text was updated successfully, but these errors were encountered: