lineage-table-v8.txt

## Lineage Table with pango lineages for the ancestral sequences
## This table identifies D614G as a lineage by identifying it with $OTHER;
## ie, everything that is not ancestral (and not Alpha, not Beta, etc)
## 
## Columns are: color, name, and pattern to match pangolin lineage
##

Black           Other (None|Unassigned|)

DarkGray	Ancestral (A)|(A.1)|(A.11)|(A.12)|(A.15)|(A.16)|(A.17)|(A.2)|(A.2.2)|(A.2.3)|(A.2.4)|(A.21)|(A.22)|(A.23)|(A.23.1)|(A.24)|(A.25)|(A.26)|(A.27)|(A.28)|(A.29)|(A.3)|(A.30)|(A.4)|(A.5)|(A.6)|(A.7)|(A.9)|(B)|(B.1.1.161)|(B.1.14)|(B.1.260)|(B.10)|(B.11)|(B.12)|(B.13)|(B.15)|(B.18)|(B.19)|(B.20)|(B.23)|(B.26)|(B.27)|(B.28)|(B.29)|(B.3)|(B.3.1)|(B.30)|(B.31)|(B.32)|(B.33)|(B.34)|(B.35)|(B.36)|(B.37)|(B.38)|(B.39)|(B.4)|(B.4.1)|(B.4.2)|(B.4.4)|(B.4.5)|(B.4.6)|(B.4.7)|(B.40)|(B.41)|(B.42)|(B.43)|(B.44)|(B.45)|(B.46)|(B.47)|(B.49)|(B.5)|(B.50)|(B.51)|(B.52)|(B.53)|(B.55)|(B.56)|(B.57)|(B.58)|(B.6)|(B.6.1)|(B.6.2)|(B.6.3)|(B.6.4)|(B.6.5)|(B.6.6)|(B.6.8)|(B.60)|(B.61)

Yellow          D614G  $OTHER

Orange		Alpha	(B\.1\.1\.7)|(Q\..*)
ForestGreen	Lambda	C\.37(\..*)?
LightPink	Beta	B\.1\.351(\..*)?
LimeGreen	Mu	B\.1\.621(\..*)?
FireBrick	Gamma	P\.1(\..*)?
Cyan		Epsilon	B\.1\.42[97](\..*)?
DodgerBlue	Iota	B\.1\.526(\..*)?
#Gold		Eta	B\.1\.525(\..*)?
#OliveDrab	Kappa	B\.1\.617\.1(\..*)?
#Goldenrod	R.1	R\.1(\..*)?
				
BlueViolet	Delta	(B\.1\.617\.2)|(AY\..*)	

Red		Omicron_BA.1	          (B\.1\.1\.529)|(BA\.1(\..*)?)
Pink		Omicron_BA.1.1		  BA\.1\.1(\..*)?
RoyalBlue	Omicron_BA.2		  BA\.2(\..*)?
Burlywood       Omicron_BA.2.12.1/BG 	  (BA\.2\.12\.1)|(BG\..*)
#LightGreen      Omicron_BA.2.13/9.1_L452M (BA\.2\.13)|(BA\.2\.9\.1)
#AliceBlue       Omicron_BA.2.18_K417T     BA\.2\.18
YellowGreen      Omicron_BA.4      	  BA\.4(\..*)?
#Aquamarine      Omicron_BA.4.1      	  BA\.4\.1(\..*)?
Chocolate       Omicron_BA.4.6  	  BA\.4\.6(\..*)?
DarkCyan        Omicron_BA.5/BE/BF     	  (BA\.5(\..*)?)|(B[EF]\..*)
Gold           Omicron_BF.5              BF\.5(\..*)?
Magenta         Omicron_BA.2.75  	  BA\.2\.75