Singularity.miniconda040512_py36_ml3

Bootstrap: shub
From: jtchilders/singularity_image_recipes:miniconda040512_py36_ml

%setup
   cd ${SINGULARITY_ROOTFS}/
   mkdir ${SINGULARITY_ROOTFS}/SparseConvNet
   cd ${SINGULARITY_ROOTFS}/SparseConvNet
   git clone https://github.com/facebookresearch/SparseConvNet.git . 

%post
   # setup MPICH 
   export PATH=$PATH:/mpich/install/bin
   export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/mpich/install/lib

   yum install -y which

   #####
   #  miniconda install
   ############
   export PATH=/miniconda3/4.5.12/bin:$PATH
   conda install -y -c bioconda google-sparsehash
   conda install -y -c anaconda pillow

   # mkdir /SparseConvNet
   cd /SparseConvNet
   # git clone  git@github.com:facebookresearch/SparseConvNet.git .
   python setup.py develop
   python setup.py install

%environment
   export PATH=/miniconda3/4.5.12/bin:$PATH