Plots/HDF5: Add dependency

[miili]

On Julia 1.8.2 I run into dependency issues wrangling around hdf5. Plots is not tied in Project.toml, I am not used to Julia and this is a wild guess.

WARNING: could not import HDF5.Group into _hdf5_implementation
WARNING: could not import HDF5.Dataset into _hdf5_implementation
┌ Warning: Error requiring `HDF5` from `Plots`
│   exception =
│    LoadError: UndefVarError: Group not defined
│    Stacktrace:
│      [1] top-level scope
│        @ ~/.julia/packages/Plots/wutJB/src/backends/hdf5.jl:138
│      [2] include(mod::Module, _path::RelocatableFolders.Path)
│        @ Base ./Base.jl:419
│      [3] include(x::RelocatableFolders.Path)
│        @ Plots ~/.julia/packages/Plots/wutJB/src/Plots.jl:1
│      [4] top-level scope
│        @ ~/.julia/packages/Plots/wutJB/src/init.jl:68
│      [5] eval
│        @ ./boot.jl:368 [inlined]
│      [6] eval
│        @ ~/.julia/packages/Plots/wutJB/src/Plots.jl:1 [inlined]
│      [7] (::Plots.var"#360#405")()
│        @ Plots ~/.julia/packages/Requires/Z8rfN/src/require.jl:101
│      [8] macro expansion
│        @ ./timing.jl:382 [inlined]
│      [9] err(f::Any, listener::Module, modname::String, file::String, line::Any)
│        @ Requires ~/.julia/packages/Requires/Z8rfN/src/require.jl:47
│     [10] (::Plots.var"#359#404")()
│        @ Plots ~/.julia/packages/Requires/Z8rfN/src/require.jl:100
│     [11] withpath(f::Any, path::String)
│        @ Requires ~/.julia/packages/Requires/Z8rfN/src/require.jl:37
│     [12] (::Plots.var"#358#403")()
│        @ Plots ~/.julia/packages/Requires/Z8rfN/src/require.jl:99
│     [13] listenpkg(f::Any, pkg::Base.PkgId)
│        @ Requires ~/.julia/packages/Requires/Z8rfN/src/require.jl:20
│     [14] macro expansion
│        @ ~/.julia/packages/Requires/Z8rfN/src/require.jl:98 [inlined]
│     [15] __init__()
│        @ Plots ~/.julia/packages/Plots/wutJB/src/init.jl:67
│     [16] _include_from_serialized(pkg::Base.PkgId, path::String, depmods::Vector{Any})
│        @ Base ./loading.jl:831
│     [17] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt64)
│        @ Base ./loading.jl:1039
│     [18] _require(pkg::Base.PkgId)
│        @ Base ./loading.jl:1315
│     [19] _require_prelocked(uuidkey::Base.PkgId)
│        @ Base ./loading.jl:1200
│     [20] macro expansion
│        @ ./loading.jl:1180 [inlined]
│     [21] macro expansion
│        @ ./lock.jl:223 [inlined]
│     [22] require(into::Module, mod::Symbol)
│        @ Base ./loading.jl:1144
│     [23] include(mod::Module, _path::String)
│        @ Base ./Base.jl:419
│     [24] exec_options(opts::Base.JLOptions)
│        @ Base ./client.jl:303
│     [25] _start()
│        @ Base ./client.jl:522
│    in expression starting at /home/marius/.julia/packages/Plots/wutJB/src/backends/hdf5.jl:35
└ @ Requires ~/.julia/packages/Requires/Z8rfN/src/require.jl:51

HDF5 update is held back by SeisNoise, thus causing incomp w newer versions of Plots

[tclements]

Thanks for bringing this to my attention! I believe this is coming from HDF5.jl not being up to date in SeisIO.jl. I can push a fix to my fork of SeisIO.jl and start using that fork of SeisIO.jl that in SeisNoise.jl.

[tclements]

A quick fix for this would be to add my fork of SeisIO.jl, then install SeisNoise.jl. We are currently working on migrating from SeisIO.jl to https://github.com/SeismoJulia/SeisBase.jl.

pkg> rm SeisIO.jl
pkg> rm SeisNoise.jl
pkg> add https://github.com/tclements/SeisIO.jl.git
pkg> add SeisNoise.jl

Let me know if that works, thanks!

[miili]

Hi Tim, I resolved the dependency conflict by enforcing a downgrade. I am no expert in Julia and had it working quickly. Maybe this is not a critical issue.