/
project.clj.archived
263 lines (230 loc) · 14.4 KB
/
project.clj.archived
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
(defproject clojure-experiments "0.2.0-SNAPSHOT"
:description "My clojure REPL experiments."
:url "https://github.com/jumarko/clojure-experiments"
:license {:name "Eclipse Public License"
:url "http://www.eclipse.org/legal/epl-v10.html"}
:dependencies [
[org.clojure/clojure "1.10.1"]
;; leads to "No matching method maybeSpecialTag" error - may be connected with virgil?
[org.clojure/clojure "1.10.1" :classifier "sources"]
;; why would I need this in projects dependencies?
#_[org.clojure/tools.deps.alpha "0.5.460"]
[org.clojure/test.check "0.10.0"]
[com.gfredericks/test.chuck "0.2.10"]
[org.apache.pdfbox/pdfbox "2.0.7"
;; we prefer log4j2
:exclusions [commons-logging]]
[net.java.dev.jna/jna "4.4.0"]
[org.flatland/useful "0.11.5"]
[org.apache.poi/poi-ooxml "3.17"]
[org.clojure/core.async "1.2.603"]
[funcool/cats "2.1.0"]
[buddy/buddy-hashers "1.8.1"]
[org.julienxx/clj-slack "0.5.5"]
;; Does this conflict with oz because of aleph/sente conflict?
;; Syntax error (FileNotFoundException) compiling at (server.clj:1:1).
;; Could not locate taoensso/sente/server_adapters/aleph__init.class, taoensso/sente/server_adapters/aleph.clj or taoensso/sente/server_adapters/aleph.cljc on classpath. Please check that namespaces with dashes use underscores in the Clojure file name.
;; jutsu is no longer maintained! https://github.com/hswick/jutsu
;; [hswick/jutsu "0.1.3"]
;; https://github.com/findmyway/plotly-clj
;; not sure how to use this:
;; [plotly-clj "0.1.1"]
;; libpython-clj allows me to use plotly in Clojure tools
;; [clj-python/libpython-clj "1.44"]
[clojure-complete "0.2.4"]
[com.rpl/specter "1.1.0"]
[quil "2.8.0"]
[inspector-jay "0.3"]
[org.clojure/tools.reader "1.3.2"]
[net.cgrand/sjacket "0.1.1"]
[jonase/eastwood "0.3.8"]
[ns-graph "0.1.2"]
[com.climate/claypoole "1.1.4"]
[etaoin "0.1.9"]
;; Java Object Layout tool - see `jdk` namespace
[org.openjdk.jol/jol-core "0.9"]
[org.clojure/java.jmx "0.3.4"]
[me.raynes/conch "0.8.0"]
;; tupelo library with lots of useful functionsl ike `spy`, `lazy-cons`, `with-exception-default`
[tupelo "0.9.71"]
;; https://github.com/clojure-goes-fast/clj-java-decompiler
;; 0.3.0-SNAPSHOT fixes the issue with JDK 11: https://github.com/clojure-goes-fast/clj-java-decompiler/pull/4
[com.clojure-goes-fast/clj-java-decompiler "0.3.0-SNAPSHOT"]
;; http://clojure-goes-fast.com/blog/profiling-tool-async-profiler/
[com.clojure-goes-fast/clj-async-profiler "0.4.0"]
;; http://clojure-goes-fast.com/blog/latency-tool-jvm-hiccup-meter/
[com.clojure-goes-fast/jvm-hiccup-meter "0.1.1"]
[com.clojure-goes-fast/clj-memory-meter "0.1.2"]
[com.clojure-goes-fast/jvm-alloc-rate-meter "0.1.3"]
[org.clojars.pntblnk/clj-ldap "0.0.15"]
[vvvvalvalval/scope-capture "0.1.4"]
[org.clojure/tools.trace "0.7.9"]
[nodisassemble "0.1.3"]
;; Problem with old tools.analyzer.jvm version (transitive dep of emmiter):
;; 2. Unhandled clojure.lang.Compiler$CompilerException
;; Error compiling clojure/tools/analyzer/jvm.clj at (1:1)
;; 1. Caused by java.lang.IllegalAccessError
;; resolve-var does not exist
#_[org.clojure/tools.emitter.jvm "0.1.0-beta5"]
[com.gfredericks/test.chuck "0.2.10"]
[phrase "0.3-alpha3"]
[net.n01se/clojure-jna "1.0.0"]
[com.taoensso/truss "1.5.0"]
[net.cgrand/xforms "0.18.2"]
;; this can break cider?! - dev profile plugins: https://github.com/Clojure2D/clojure2d/blob/master/project.clj
[clojure2d "1.1.0"
;; we use log4j2 logging preferably
:exclusions [org.slf4j/slf4j-simple
;; this is included as extra dep for clindex (see below)
org.clojure/tools.namespace
cider.nrepl]]
[datascript "0.16.6"]
[lambdaisland/deep-diff "0.0-8"]
[bocko "1.0.0"]
;; OZ - powerful data visualizations https://github.com/metasoarous/oz
[metasoarous/oz "1.6.0-alpha1"
:exclusions [
;; this is included as extra dep for clindex (see below)
org.clojure/tools.namespace
]]
;; even easier Vega lite visualizations: https://github.com/jsa-aerial/hanami
;; -> installed from local repo: ~/workspace/clojure/hanami
[aerial.hanami "0.10.11"]
;; modern version of sente required by oz
#_[com.taoensso/sente "1.13.1"]
;; and sente requires newer transit version
#_[com.cognitect/transit-clj "0.8.313"]
#_[com.cognitect/transit-cljs "0.8.256"]
[org.clojure/java.data "0.1.1"]
[fn-fx/fn-fx-javafx "0.5.0-SNAPSHOT"]
;; cool alternative to fn-fx: https://github.com/cljfx/cljfx
[cljfx "1.5.1"]
[rewrite-clj "0.6.1"]
[amperity/greenlight "0.1.2"]
;; cool experiment but not actively developed and obsolete
;; also includes old rrb.vector version transitvely which makes it fail for JDK 11
;; [bronsa/tools.decompiler "0.1.0-alpha1"]
;; REBL: https://github.com/cognitect-labs/REBL-distro
;; It has to be installed in the local repository first
;; - download it here: http://rebl.cognitect.com/download.html
;; - mvn install:install-file -Dfile=/Users/jumar/tools/clojure/rebl/REBL-0.9.109/REBL-0.9.109.jar -DgroupId=com.cognitect -DartifactId=rebl -Dversion=0.9.109 -Dpackaging=jar -DgeneratePom=true
;; I DON'T USE THIS!
;; [com.cognitect/rebl "0.9.109"]
;; statistics functions - e.g. TTest
[org.apache.commons/commons-math3 "3.6.1"]
;; https://github.com/generateme/fastmath
[generateme/fastmath "2.0.3"]
;; kixi.stats: https://github.com/mastodonC/kixi.stats
;; see also lambdaisland: https://lambdaisland.com/episodes/clojure-data-science-kixi-stats
[kixi/stats "0.5.4"]
[redux "0.1.4"]
[net.cgrand/xforms "0.19.0"]
;; probability distributions in Clojure
[distributions "0.1.2"]
[thi.ng/geom "1.0.0-RC3"]
;; added explicitly otherwise I was getting "namespace 'cheshire.factory' not found error"
[cheshire "5.8.1"]
[org.flatland/ordered "1.5.7"]
[spec-provider "0.4.14"]
[tesser.core "1.0.3"]
[clj-http "3.10.0"]
;; shell scripting experiments
[com.palletops/stevedore "0.8.0-beta.7"]
;; simple profiling
[com.taoensso/tufte "2.0.1"]
;; timbre alpha version to fix dependency conflict?
;; https://github.com/ptaoussanis/timbre/issues/263
[com.taoensso/timbre "4.11.0-alpha1"]
;; use also new encore version - perhaps to avoid conflicts?
[com.taoensso/encore "2.122.0"]
;;; logging with clojure.tools.logging and log4j2
;;; http://brownsofa.org/blog/2015/06/14/clojure-in-production-logging/
;;; https://github.com/clojure/tools.logging
;;; https://logging.apache.org/log4j/2.x/manual/configuration.html
[org.clojure/tools.logging "0.5.0"]
;; Note: this is really needed https://logging.apache.org/log4j/2.x/maven-artifacts.html
;; Otherwise you'd get "ERROR StatusLogger No Log4j 2 configuration file found. "
[org.apache.logging.log4j/log4j-api "2.12.1"]
[org.apache.logging.log4j/log4j-core "2.12.1"]
;; also this slf4j bridge
[org.apache.logging.log4j/log4j-slf4j-impl "2.12.1"]
;; https://github.com/RickMoynihan/lein-tools-deps
;; Do I need this stuff?
;; [lein-tools-deps "0.4.5"]
;; https://github.com/zane/vega.repl
;; the simplest possible way to go from Clojure data and a Vega or Vega-Lite spec to a rendered visualization
;; built from custom ~/workspace/clojure/vega.repl/project.clj
;; [vega.repl/vega.repl "0.1.0-SNAPSHOT"]
;; to demo spec-based configuration checking -> see config.clj
[cprop "0.1.14"]
;; spectrum for static-type checks based on spec
[spectrum "0.2.5"]
;; Note: this is also in ~/.lein/profiles.clj !!!
;; clindex is a cool tool for indexing project dependencies: https://github.com/jpmonettas/clindex
;; check also clograms: https://github.com/jpmonettas/clograms
[clindex "0.4.3"]
;; custom tools.namespace version required for clindex
;; -> see https://groups.google.com/forum/?utm_medium=email&utm_source=footer#!msg/clojure/cV6rvgR9Pfs/Z_kOOAwwBAAJ
[jpmonettas/tools.namespace "0.3.2"]
;; cognitect's aws-api: https://github.com/cognitect-labs/aws-api
;; => search on mvnrepository.com http://mvnrepository.com/search?q=com.cognitect.aws&ref=opensearch
[com.cognitect.aws/api "0.8.456"]
[com.cognitect.aws/endpoints "1.1.11.789"]
;; logs: https://mvnrepository.com/artifact/com.cognitect.aws/logs
[com.cognitect.aws/logs "798.2.672.0"]
;; core.cache and core.memoize deps explicitly stated to not conflict with other libs
[org.clojure/core.cache "1.0.207"]
[org.clojure/core.memoize "1.0.236"]
;; tech.ml.dataset requires higher smile-* libs versions than fastmath
[techascent/tech.ml.dataset "6.012"]
;; tmd needs higher version of encore too:
[com.taoensso/encore "3.19.0"]
;; tablecloth provides a siple API for tmd: https://github.com/scicloj/tablecloth
[scicloj/tablecloth "6.006"]
;; jme-clj - jMonkeyEngine wrapper for clojure: https://github.com/ertugrulcetin/jme-clj
[jme-clj "0.1.0"]
;; used in Joy of Clojure - Chapter 16
[org.clojure/core.logic "1.0.0"]
;; used in 'Clojure Inside Out' - Functional Composition: https://github.com/ctford/functional-composition/blob/master/project.clj
[overtone "0.10.6"]
;; use later rrb-vector version to fix "Must hint overloaded method: toArray"
;; https://mvnrepository.com/artifact/org.clojure/core.rrb-vector
[org.clojure/core.rrb-vector "0.1.2"]
[leipzig "0.10.0"]
;; capture io for repeatable tests, etc. https://github.com/gfredericks/vcr-clj
[com.gfredericks/vcr-clj "0.4.19"]
;; https://github.com/nubank/matcher-combinators/
[nubank/matcher-combinators "3.1.4"]
;; https://github.com/noprompt/meander/
[meander/epsilon "0.0.602"]
;; https://github.com/djblue/portal
[djblue/portal "0.14.0"]
]
;; https://github.com/RickMoynihan/lein-tools-deps
;; Do I need this stuff?
;; :middleware [lein-tools-deps.plugin/resolve-dependencies-with-deps-edn]
;; :lein-tools-deps/config {:config-files [:install :user :project]}
:java-source-paths ["src/java"]
:jvm-opts ["-agentlib:jdwp=transport=dt_socket,server=y,suspend=n,address=*:5005" ; this can be used with http://georgejahad.com/clojure/cdt.html too
"-Djol.tryWithSudo=true" ;; cljol: # WARNING: Unable to attach Serviceability Agent. You can try again with escalated privileges. Two options: a) use -Djol.tryWithSudo=true to try with sudo; b) echo 0 | sudo tee /proc/sys/kernel/yama/ptrace_scopejk 1j
"-Djdk.attach.allowAttachSelf=true"
;; to make clj-memory-meter work with JDK 16: https://github.com/clojure-goes-fast/clj-memory-meter/issues/8
"--illegal-access=permit"
;; to access Hotspot Severicability API - see https://stackoverflow.com/questions/55698109/has-this-method-ever-been-called-inside-a-running-jvm
"--add-modules=jdk.hotspot.agent"
"--add-exports=jdk.hotspot.agent/sun.jvm.hotspot=ALL-UNNAMED"
"--add-exports=jdk.hotspot.agent/sun.jvm.hotspot.oops=ALL-UNNAMED"
"--add-exports=jdk.hotspot.agent/sun.jvm.hotspot.tools=ALL-UNNAMED"
"--add-exports=jdk.hotspot.agent/sun.jvm.hotspot.runtime=ALL-UNNAMED"
"--add-exports=jdk.hotspot.agent/sun.jvm.hotspot.classfile=ALL-UNNAMED"
;; just as an example of overriding default configuration values
"-Dconf=my-config.edn"
;; for helpful NPE messages: https://openjdk.java.net/jeps/358
"-XX:+ShowCodeDetailsInExceptionMessages"]
:main ^:skip-aot clojure-experiments.core
;; example of how to add project's git commit sha to uberjar's manifest
:manifest {"git-commit-sha" ~(fn [_project] (:out (clojure.java.shell/sh "git" "rev-list" "head" "-1")))}
:target-path "target/%s"
:profiles {:uberjar {:aot :all}
;; notice sources for development!
})