Feedback on the new resolution mechanism #230

krassowski · 2024-04-03T17:24:40Z

It looks like this is going to break a few more packages. I just tried running CI on jupyter-server and see this:

+ '[' Linux == Windows ']'
+ '[' -f pyproject.toml ']'
+ uv pip compile --resolution=lowest-direct pyproject.toml -o /home/runner/constraints.txt
error: Failed to download and build: overrides==0.1
  Caused by: Failed to build: overrides==0.1
  Caused by: Build backend failed to determine extra requires with `build_wheel()` with exit status: 1
--- stdout:

Also many other jobs (e.g. https://github.com/krassowski/jupyter_server/actions/runs/8542681567/job/23404855225) seem to be failing with:

E       TypeError: websocket_connect() got an unexpected keyword argument 'body'

but this might be unrelated

It installs the lowest version possible when no floor version is defined:

dependencies = [
    "async_lru>=1.0.0",
    "httpx>=0.25.0",
    "importlib-metadata>=4.8.3;python_version<\"3.10\"",
    "importlib-resources>=1.4;python_version<\"3.9\"",
    "ipykernel",
    "jinja2>=3.0.3",
    "jupyter_core",
    "jupyter_server>=2.4.0,<3",
    "jupyter-lsp>=2.0.0",
    "jupyterlab_server>=2.19.0,<3",
    "notebook_shim>=0.2",
    "packaging",
    "tomli;python_version<\"3.11\"",
    "tornado>=6.2.0",
    "traitlets",
]

Results in:

+ uv pip compile --resolution=lowest-direct pyproject.toml -o /home/runner/constraints.txt
error: Failed to download and build: traitlets==0.0.1
  Caused by: Failed to build: traitlets==0.0.1
  Caused by: Build backend failed to determine extra requires with `build_wheel()` with exit status: 1

It pins to oldest available version even if other dependencies of dependencies have a pin (after pinning traitlets to something modern):

+ uv pip compile --resolution=lowest-direct pyproject.toml -o /home/runner/constraints.txt
Resolved 92 packages in 1.07s
# This file was autogenerated by uv via the following command:
#    uv pip compile --resolution=lowest-direct pyproject.toml -o /home/runner/constraints.txt
anyio==4.3.0
    # via
    #   httpcore
    #   jupyter-server
argon2-cffi==23.1.0
    # via jupyter-server
argon2-cffi-bindings==21.2.0
    # via argon2-cffi
arrow==1.3.0
    # via isoduration
asttokens==2.4.1
    # via stack-data
async-lru==1.0.0
attrs==23.2.0
    # via
    #   jsonschema
    #   referencing
babel==2.14.0
    # via jupyterlab-server
backcall==0.2.0
    # via ipython
beautifulsoup4==4.12.3
    # via nbconvert
bleach==6.1.0
    # via nbconvert
certifi==2024.2.2
    # via
    #   httpcore
    #   httpx
    #   requests
cffi==1.16.0
    # via argon2-cffi-bindings
charset-normalizer==3.3.2
    # via requests
decorator==5.1.1
    # via ipython
defusedxml==0.7.1
    # via nbconvert
exceptiongroup==1.2.0
    # via anyio
executing==2.0.1
    # via stack-data
fastjsonschema==2.19.1
    # via nbformat
fqdn==1.5.1
    # via jsonschema
h11==0.14.0
    # via httpcore
httpcore==0.18.0
    # via httpx
httpx==0.25.0
idna==3.6
    # via
    #   anyio
    #   httpx
    #   jsonschema
    #   requests
importlib-metadata==4.8.3
    # via
    #   jupyter-client
    #   jupyter-lsp
    #   jupyterlab-server
    #   nbconvert
importlib-resources==1.4.0
    # via
    #   jsonschema
    #   jsonschema-specifications
ipykernel==4.0.1
ipython==8.12.3
    # via ipykernel
isoduration==20.11.0
    # via jsonschema
jedi==0.19.1
    # via ipython
jinja2==3.0.3
    # via
    #   jupyter-server
    #   jupyterlab-server
    #   nbconvert
json5==0.9.24
    # via jupyterlab-server
jsonpointer==2.4
    # via jsonschema
jsonschema==4.21.1
    # via
    #   jupyter-events
    #   jupyterlab-server
    #   nbformat
jsonschema-specifications==2023.12.1
    # via jsonschema
jupyter-client==8.6.1
    # via
    #   ipykernel
    #   jupyter-server
    #   nbclient
jupyter-core==4.12.0
    # via
    #   jupyter-client
    #   jupyter-server
    #   nbclient
    #   nbconvert
    #   nbformat
jupyter-events==0.10.0
    # via jupyter-server
jupyter-lsp==2.0.0
jupyter-server==2.4.0
    # via
    #   jupyter-lsp
    #   jupyterlab-server
    #   notebook-shim
jupyter-server-terminals==0.5.3
    # via jupyter-server
jupyterlab-pygments==0.3.0
    # via nbconvert
jupyterlab-server==2.19.0
markupsafe==2.1.5
    # via
    #   jinja2
    #   nbconvert
matplotlib-inline==0.1.6
    # via ipython
mistune==3.0.2
    # via nbconvert
nbclient==0.10.0
    # via nbconvert
nbconvert==7.16.3
    # via jupyter-server
nbformat==5.10.3
    # via
    #   jupyter-server
    #   nbclient
    #   nbconvert
notebook-shim==0.2.0
packaging==21.3
    # via
    #   jupyter-server
    #   jupyterlab-server
    #   nbconvert
pandocfilters==1.5.1
    # via nbconvert
parso==0.8.3
    # via jedi
pexpect==4.9.0
    # via ipython
pickleshare==0.7.5
    # via ipython
pkgutil-resolve-name==1.3.10
    # via jsonschema
prometheus-client==0.20.0
    # via jupyter-server
prompt-toolkit==3.0.43
    # via ipython
ptyprocess==0.7.0
    # via
    #   pexpect
    #   terminado
pure-eval==0.2.2
    # via stack-data
pycparser==2.22
    # via cffi
pygments==2.17.2
    # via
    #   ipython
    #   nbconvert
pyparsing==3.1.2
    # via packaging
python-dateutil==2.9.0.post0
    # via
    #   arrow
    #   jupyter-client
python-json-logger==2.0.7
    # via jupyter-events
pytz==2024.1
    # via babel
pyyaml==6.0.1
    # via jupyter-events
pyzmq==25.1.2
    # via
    #   jupyter-client
    #   jupyter-server
referencing==0.34.0
    # via
    #   jsonschema
    #   jsonschema-specifications
    #   jupyter-events
requests==2.31.0
    # via jupyterlab-server
rfc3339-validator==0.1.4
    # via
    #   jsonschema
    #   jupyter-events
rfc3986-validator==0.1.1
    # via
    #   jsonschema
    #   jupyter-events
rpds-py==0.18.0
    # via
    #   jsonschema
    #   referencing
send2trash==1.8.2
    # via jupyter-server
six==1.16.0
    # via
    #   asttokens
    #   bleach
    #   python-dateutil
    #   rfc3339-validator
sniffio==1.3.1
    # via
    #   anyio
    #   httpcore
    #   httpx
soupsieve==2.5
    # via beautifulsoup4
stack-data==0.6.3
    # via ipython
terminado==0.18.1
    # via
    #   jupyter-server
    #   jupyter-server-terminals
tinycss2==1.2.1
    # via nbconvert
tomli==0.2.0
tornado==6.2
    # via
    #   jupyter-client
    #   jupyter-server
    #   terminado
traitlets==5.6.0
    # via
    #   ipykernel
    #   ipython
    #   jupyter-client
    #   jupyter-core
    #   jupyter-events
    #   jupyter-server
    #   matplotlib-inline
    #   nbclient
    #   nbconvert
    #   nbformat
types-python-dateutil==2.9.0.20240316
    # via arrow
typing-extensions==4.10.0
    # via
    #   anyio
    #   ipython
uri-template==1.3.0
    # via jsonschema
urllib3==2.2.1
    # via requests
wcwidth==0.2.13
    # via prompt-toolkit
webcolors==1.13
    # via jsonschema
webencodings==0.5.1
    # via
    #   bleach
    #   tinycss2
websocket-client==1.7.0
    # via jupyter-server
zipp==3.18.1
    # via importlib-metadata

/scripts/ci_install.sh: line 19: yarn: command not found
+ mkdir -p /home/runner/.jupyter
+ git config --global user.name foo
+ git config --global user.email foo@bar.com
+ pip install -q --upgrade pip --user
+ pip --version
pip 24.0 from /opt/hostedtoolcache/Python/3.8.18/x64/lib/python3.8/site-packages/pip (python 3.8)
+ pip install -e '.[dev,test]'
Obtaining file:///home/runner/work/jupyterlab/jupyterlab
  Installing build dependencies: started
  Installing build dependencies: finished with status 'error'
  error: subprocess-exited-with-error
  
  × pip subprocess to install build dependencies did not run successfully.
  │ exit code: 1
  ╰─> [[29](https://github.com/krassowski/jupyterlab/actions/runs/8542572841/job/23404523285#step:4:30) lines of output]
      Collecting hatchling>=1.21.1
        Using cached hatchling-1.22.4-py3-none-any.whl.metadata (3.8 kB)
      Collecting packaging>=21.3 (from hatchling>=1.21.1)
        Downloading packaging-21.3-py3-none-any.whl.metadata (15 kB)
      Collecting pathspec>=0.10.1 (from hatchling>=1.21.1)
        Using cached pathspec-0.12.1-py3-none-any.whl.metadata (21 kB)
      Collecting pluggy>=1.0.0 (from hatchling>=1.21.1)
        Using cached pluggy-1.4.0-py3-none-any.whl.metadata (4.3 kB)
      INFO: pip is looking at multiple versions of hatchling to determine which version is compatible with other requirements. This could take a while.
      Collecting hatchling>=1.21.1
        Downloading hatchling-1.22.3-py3-none-any.whl.metadata (3.8 kB)
        Downloading hatchling-1.22.2-py3-none-any.whl.metadata (3.8 kB)
        Using cached hatchling-1.21.1-py3-none-any.whl.metadata (3.8 kB)
      Collecting editables>=0.3 (from hatchling>=1.21.1)
        Using cached editables-0.5-py3-none-any.whl.metadata (3.1 kB)
      ERROR: Cannot install hatchling==1.21.1, hatchling==1.22.2, hatchling==1.22.3 and hatchling==1.22.4 because these package versions have conflicting dependencies.
      
      The conflict is caused by:
          hatchling 1.22.4 depends on tomli>=1.2.2; python_version < "3.11"
          hatchling 1.22.3 depends on tomli>=1.2.2; python_version < "3.11"
          hatchling 1.22.2 depends on tomli>=1.2.2; python_version < "3.11"
          hatchling 1.21.1 depends on tomli>=1.2.2; python_version < "3.11"
          The user requested (constraint) tomli==0.2.0
      
      To fix this you could try to:
      1. loosen the range of package versions you've specified
      2. remove package versions to allow pip attempt to solve the dependency conflict
      
      ERROR: ResolutionImpossible: for help visit https://pip.pypa.io/en/latest/topics/dependency-resolution/#dealing-with-dependency-conflicts
      [end of output]
  
  note: This error originates from a subprocess, and is likely not a problem with pip.
error: subprocess-exited-with-error
× pip subprocess to install build dependencies did not run successfully.
│ exit code: 1
╰─> See above for output.
note: This error originates from a subprocess, and is likely not a problem with pip.
+ pip install -v -e '.[dev,test]'
Using pip 24.0 from /opt/hostedtoolcache/Python/3.8.18/x64/lib/python3.8/site-packages/pip (python 3.8)
Obtaining file:///home/runner/work/jupyterlab/jupyterlab
  Installing build dependencies: started
  Running command pip subprocess to install build dependencies
  Collecting hatchling>=1.21.1
    Using cached hatchling-1.22.4-py3-none-any.whl.metadata (3.8 kB)
  Collecting packaging>=21.3 (from hatchling>=1.21.1)
    Using cached packaging-21.3-py3-none-any.whl.metadata (15 kB)
  Collecting pathspec>=0.10.1 (from hatchling>=1.21.1)
    Using cached pathspec-0.12.1-py3-none-any.whl.metadata (21 kB)
  Collecting pluggy>=1.0.0 (from hatchling>=1.21.1)
    Using cached pluggy-1.4.0-py3-none-any.whl.metadata (4.3 kB)
  INFO: pip is looking at multiple versions of hatchling to determine which version is compatible with other requirements. This could take a while.
  Collecting hatchling>=1.21.1
    Using cached hatchling-1.22.3-py3-none-any.whl.metadata (3.8 kB)
    Using cached hatchling-1.22.2-py3-none-any.whl.metadata (3.8 kB)
    Using cached hatchling-1.21.1-py3-none-any.whl.metadata (3.8 kB)
  Collecting editables>=0.3 (from hatchling>=1.21.1)
    Using cached editables-0.5-py3-none-any.whl.metadata (3.1 kB)
  ERROR: Cannot install hatchling==1.21.1, hatchling==1.22.2, hatchling==1.22.3 and hatchling==1.22.4 because these package versions have conflicting dependencies.
  The conflict is caused by:
      hatchling 1.22.4 depends on tomli>=1.2.2; python_version < "3.11"
      hatchling 1.22.3 depends on tomli>=1.2.2; python_version < "3.11"
      hatchling 1.22.2 depends on tomli>=1.2.2; python_version < "3.11"
      hatchling 1.21.1 depends on tomli>=1.2.2; python_version < "3.11"
      The user requested (constraint) tomli==0.2.0
  To fix this you could try to:
  1. loosen the range of package versions you've specified
  2. remove package versions to allow pip attempt to solve the dependency conflict
  ERROR: ResolutionImpossible: for help visit https://pip.pypa.io/en/latest/topics/dependency-resolution/#dealing-with-dependency-conflicts
  error: subprocess-exited-with-error

The text was updated successfully, but these errors were encountered:

krassowski · 2024-04-03T17:28:25Z

Also on notebook in jupyter/notebook#7312:

+ '[' standard == pre ']'
+ '[' standard == minimum ']'
+ uv pip compile pyproject.toml -o /home/runner/constraints.txt
Resolved 91 packages in 559ms
# This file was autogenerated by uv via the following command:
#    uv pip compile pyproject.toml -o /home/runner/constraints.txt
anyio==4.3.0
    # via
    #   httpx
    #   jupyter-server
argon2-cffi==23.1.0
    # via jupyter-server
argon2-cffi-bindings==21.2.0
    # via argon2-cffi
arrow==1.3.0
    # via isoduration
asttokens==2.4.1
    # via stack-data
async-lru==2.0.4
    # via jupyterlab
attrs==23.2.0
    # via
    #   jsonschema
    #   referencing
babel==2.14.0
    # via jupyterlab-server
beautifulsoup4==4.12.3
    # via nbconvert
bleach==6.1.0
    # via nbconvert
certifi==2024.2.2
    # via
    #   httpcore
    #   httpx
    #   requests
cffi==1.16.0
    # via argon2-cffi-bindings
charset-normalizer==3.3.2
    # via requests
comm==0.2.2
    # via ipykernel
debugpy==1.8.1
    # via ipykernel
decorator==5.1.1
    # via ipython
defusedxml==0.7.1
    # via nbconvert
exceptiongroup==1.2.0
    # via
    #   anyio
    #   ipython
executing==2.0.1
    # via stack-data
fastjsonschema==2.19.1
    # via nbformat
fqdn==1.5.1
    # via jsonschema
h11==0.14.0
    # via httpcore
httpcore==1.0.5
    # via httpx
httpx==0.27.0
    # via jupyterlab
idna==3.6
    # via
    #   anyio
    #   httpx
    #   jsonschema
    #   requests
ipykernel==6.29.4
    # via jupyterlab
ipython==8.23.0
    # via ipykernel
isoduration==20.11.0
    # via jsonschema
jedi==0.19.1
    # via ipython
jinja2==3.1.3
    # via
    #   jupyter-server
    #   jupyterlab
    #   jupyterlab-server
    #   nbconvert
json5==0.9.24
    # via jupyterlab-server
jsonpointer==2.4
    # via jsonschema
jsonschema==4.21.1
    # via
    #   jupyter-events
    #   jupyterlab-server
    #   nbformat
jsonschema-specifications==2023.12.1
    # via jsonschema
jupyter-client==8.6.1
    # via
    #   ipykernel
    #   jupyter-server
    #   nbclient
jupyter-core==5.7.2
    # via
    #   ipykernel
    #   jupyter-client
    #   jupyter-server
    #   jupyterlab
    #   nbclient
    #   nbconvert
    #   nbformat
jupyter-events==0.10.0
    # via jupyter-server
jupyter-lsp==2.2.4
    # via jupyterlab
jupyter-server==2.13.0
    # via
    #   jupyter-lsp
    #   jupyterlab
    #   jupyterlab-server
    #   notebook-shim
jupyter-server-terminals==0.5.3
    # via jupyter-server
jupyterlab==4.2.0b0
jupyterlab-pygments==0.3.0
    # via nbconvert
jupyterlab-server==2.25.4
    # via jupyterlab
markupsafe==2.1.5
    # via
    #   jinja2
    #   nbconvert
matplotlib-inline==0.1.6
    # via
    #   ipykernel
    #   ipython
mistune==3.0.2
    # via nbconvert
nbclient==0.10.0
    # via nbconvert
nbconvert==7.16.3
    # via jupyter-server
nbformat==5.10.3
    # via
    #   jupyter-server
    #   nbclient
    #   nbconvert
nest-asyncio==1.6.0
    # via ipykernel
notebook-shim==0.2.4
    # via jupyterlab
overrides==7.7.0
    # via jupyter-server
packaging==24.0
    # via
    #   ipykernel
    #   jupyter-server
    #   jupyterlab
    #   jupyterlab-server
    #   nbconvert
pandocfilters==1.5.1
    # via nbconvert
parso==0.8.3
    # via jedi
pexpect==4.9.0
    # via ipython
platformdirs==4.2.0
    # via jupyter-core
prometheus-client==0.20.0
    # via jupyter-server
prompt-toolkit==3.0.43
    # via ipython
psutil==5.9.8
    # via ipykernel
ptyprocess==0.7.0
    # via
    #   pexpect
    #   terminado
pure-eval==0.2.2
    # via stack-data
pycparser==2.22
    # via cffi
pygments==2.17.2
    # via
    #   ipython
    #   nbconvert
python-dateutil==2.9.0.post0
    # via
    #   arrow
    #   jupyter-client
python-json-logger==2.0.7
    # via jupyter-events
pyyaml==6.0.1
    # via jupyter-events
pyzmq==25.1.2
    # via
    #   ipykernel
    #   jupyter-client
    #   jupyter-server
referencing==0.34.0
    # via
    #   jsonschema
    #   jsonschema-specifications
    #   jupyter-events
requests==2.31.0
    # via jupyterlab-server
rfc3339-validator==0.1.4
    # via
    #   jsonschema
    #   jupyter-events
rfc3986-validator==0.1.1
    # via
    #   jsonschema
    #   jupyter-events
rpds-py==0.18.0
    # via
    #   jsonschema
    #   referencing
send2trash==1.8.2
    # via jupyter-server
six==1.16.0
    # via
    #   asttokens
    #   bleach
    #   python-dateutil
    #   rfc3339-validator
sniffio==1.3.1
    # via
    #   anyio
    #   httpx
soupsieve==2.5
    # via beautifulsoup4
stack-data==0.6.3
    # via ipython
terminado==0.18.1
    # via
    #   jupyter-server
    #   jupyter-server-terminals
tinycss2==1.2.1
    # via nbconvert
tomli==2.0.1
    # via jupyterlab
tornado==6.4
    # via
    #   ipykernel
    #   jupyter-client
    #   jupyter-server
    #   jupyterlab
    #   terminado
traitlets==5.14.2
    # via
    #   comm
    #   ipykernel
    #   ipython
    #   jupyter-client
    #   jupyter-core
    #   jupyter-events
    #   jupyter-server
    #   jupyterlab
    #   matplotlib-inline
+ echo PIP_CONSTRAINT=/home/runner/constraints.txt
    #   nbclient
    #   nbconvert
    #   nbformat
types-python-dateutil==2.9.0.20240[316](https://github.com/jupyter/notebook/actions/runs/8539292958/job/23396548527?pr=7312#step:3:330)
    # via arrow
typing-extensions==4.10.0
    # via
    #   anyio
    #   async-lru
    #   ipython
uri-template==1.3.0
    # via jsonschema
urllib3==2.2.1
    # via requests
wcwidth==0.2.13
    # via prompt-toolkit
webcolors==1.13
    # via jsonschema
webencodings==0.5.1
    # via
    #   bleach
    #   tinycss2
websocket-client==1.7.0
    # via jupyter-server

+ hatch run cov:test
Creating environment: cov
Installing project in development mode
ERROR: Cannot install jupyter-server, jupyterlab-server and openapi-core because these package versions have conflicting dependencies.
ERROR: ResolutionImpossible: for help visit https://pip.pypa.io/en/latest/topics/dependency-resolution/#dealing-with-dependency-conflicts

https://github.com/jupyter/notebook/actions/runs/8539292958/job/23396548527?pr=7312

krassowski · 2024-04-03T18:20:36Z

I guess there is nothing to do here. With bumping a few pins the job is now passing for me. I just think that maybe this should have been a new release given how many downstreams are affected? But maybe it is ok if it does find at least one true positive where lack of a pin made a difference (so far I have not seen it though).

jtpio · 2024-04-04T07:36:41Z

Yes, and it's also a bit tedious to fix. For example in the case of the notebook issue reported above, the default hatch run cov:test does not give enough information:

+ hatch run cov:test
Creating environment: cov
Installing project in development mode
ERROR: Cannot install jupyter-server, jupyterlab-server and openapi-core because these package versions have conflicting dependencies.
ERROR: ResolutionImpossible: for help visit https://pip.pypa.io/en/latest/topics/dependency-resolution/#dealing-with-dependency-conflicts

While doing a plain pip install -ve ".[dev,test]" gives more pointers:

In this case, it looks like it's not even fixable in notebook, but requires a fix in jupyterlab_server first?

jtpio · 2024-04-04T07:41:35Z

In this case, it looks like it's not even fixable in notebook, but requires a fix in jupyterlab_server first?

OK the jupyterlab_server CI is also failing: jupyterlab/jupyterlab_server#446

So it looks like that would mean fixing the dependencies in jupyterlab_server, and then making a new release of jupyterlab_server to fix the CI of other downstreams (after bumping to the latest jupyterlab_server)?

krassowski · 2024-04-04T08:55:29Z

Yes, the thing worries me is that even if we do some magic with the pins the final resolution may not represent the actual resolution users get when installing using pip. I think using the new constraints file generation method for minimum resolution mode is fine, but by default we should not use it.

blink1073 · 2024-04-04T14:26:14Z

That was a separate bug that I fixed.
I think that is actually a good thing, and I've been updating packages to be more accurate.

I think the errors we're seeing in practice will be fixed by using --extra test in the resolution, doing that now.

blink1073 · 2024-04-04T14:28:36Z

I think using the new constraints file generation method for minimum resolution mode is fine, but by default we should not use it.

I disagree, this is an "advanced" check, and we're making it a bit stricter and more correct.

blink1073 · 2024-04-04T14:36:22Z

Ah, I do see the point about affecting regular installs. If the next release doesn't fix that in most cases, we can make it opt-in for regular installs.

blink1073 · 2024-04-04T14:45:44Z

Okay, no, now jupyter_server doesn't install. Let's call this a failed experiment...

krassowski · 2024-04-04T15:24:17Z

Thank you!

krassowski added the enhancement New feature or request label Apr 3, 2024

krassowski mentioned this issue Apr 3, 2024

Use dependency_type: minimum for Minimum Versions check jupyterlab/jupyterlab#16105

Merged

krassowski closed this as completed Apr 3, 2024

jtpio mentioned this issue Apr 4, 2024

Kick CI jupyterlab/jupyterlab_server#446

Closed

krassowski reopened this Apr 4, 2024

blink1073 mentioned this issue Apr 4, 2024

Do not use constraints file for downstream test #233

Merged

blink1073 closed this as completed in #233 Apr 4, 2024

This was referenced Apr 5, 2024

Test Minimal version fails jupyterlab/jupyterlab#16115

Closed

Revert traitlets pin jupyterlab/jupyterlab#16118

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Feedback on the new resolution mechanism #230

Feedback on the new resolution mechanism #230

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Feedback on the new resolution mechanism #230

Feedback on the new resolution mechanism #230

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