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kv_indexer.clj
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kv_indexer.clj
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(ns crux.kv-indexer
(:require [crux.codec :as c]
[crux.db :as db]
[crux.index :as idx]
[crux.io :as cio]
[crux.kv :as kv]
[crux.lru :as lru]
[crux.memory :as mem]
[crux.status :as status]
[crux.morton :as morton])
(:import (crux.codec EntityTx EntityValueContentHash)
java.io.Closeable
java.util.function.Supplier
(clojure.lang MapEntry)
(org.agrona DirectBuffer ExpandableDirectByteBuffer)))
(defn etx->kvs [^EntityTx etx]
[[(c/encode-entity+vt+tt+tx-id-key-to
nil
(c/->id-buffer (.eid etx))
(.vt etx)
(.tt etx)
(.tx-id etx))
(c/->id-buffer (.content-hash etx))]
[(c/encode-entity+z+tx-id-key-to
nil
(c/->id-buffer (.eid etx))
(c/encode-entity-tx-z-number (.vt etx) (.tt etx))
(.tx-id etx))
(c/->id-buffer (.content-hash etx))]])
(def ^:private ^ThreadLocal value-buffer-tl
(ThreadLocal/withInitial
(reify Supplier
(get [_]
(ExpandableDirectByteBuffer.)))))
(defrecord PrefixKvIterator [i ^DirectBuffer prefix]
kv/KvIterator
(seek [_ k]
(when-let [k (kv/seek i k)]
(when (mem/buffers=? k prefix (.capacity prefix))
k)))
(next [_]
(when-let [k (kv/next i)]
(when (mem/buffers=? k prefix (.capacity prefix))
k)))
(value [_]
(kv/value i))
Closeable
(close [_]
(.close ^Closeable i)))
(defn new-prefix-kv-iterator ^java.io.Closeable [i prefix]
(->PrefixKvIterator i prefix))
(defn all-keys-in-prefix
([i prefix] (all-keys-in-prefix i prefix prefix {}))
([i prefix seek-k] (all-keys-in-prefix i prefix seek-k {}))
([i ^DirectBuffer prefix, ^DirectBuffer seek-k, {:keys [entries? reverse?]}]
(letfn [(step [k]
(lazy-seq
(when (and k (mem/buffers=? prefix k (.capacity prefix)))
(cons (if entries?
(MapEntry/create (mem/copy-to-unpooled-buffer k) (mem/copy-to-unpooled-buffer (kv/value i)))
(mem/copy-to-unpooled-buffer k))
(step (if reverse? (kv/prev i) (kv/next i)))))))]
(step (if reverse?
(when (kv/seek i (-> seek-k (mem/copy-buffer) (mem/inc-unsigned-buffer!)))
(kv/prev i))
(kv/seek i seek-k))))))
(defn- buffer-or-value-buffer [v]
(cond
(instance? DirectBuffer v)
v
(some? v)
(c/->value-buffer v)
:else
c/empty-buffer))
(defn- buffer-or-id-buffer [v]
(cond
(instance? DirectBuffer v)
v
(some? v)
(c/->id-buffer v)
:else
c/empty-buffer))
(defn- inc-unsigned-prefix-buffer [buffer prefix-size]
(mem/inc-unsigned-buffer! (mem/limit-buffer (mem/copy-buffer buffer prefix-size (.get idx/seek-buffer-tl)) prefix-size)))
(defn- find-first-entity-tx-within-range [i min max eid]
(let [prefix-size (+ c/index-id-size c/id-size)
seek-k (c/encode-entity+z+tx-id-key-to
(.get idx/seek-buffer-tl)
eid
min)]
(loop [k (kv/seek i seek-k)]
(when (and k (mem/buffers=? seek-k k prefix-size))
(let [z (c/decode-entity+z+tx-id-key-as-z-number-from k)]
(if (morton/morton-number-within-range? min max z)
(let [entity-tx (idx/safe-entity-tx (c/decode-entity+z+tx-id-key-from k))
v (kv/value i)]
(if-not (mem/buffers=? c/nil-id-buffer v)
[(c/->id-buffer (.eid entity-tx))
(idx/enrich-entity-tx entity-tx v)
z]
[::deleted-entity entity-tx z]))
(let [[litmax bigmin] (morton/morton-range-search min max z)]
(when-not (neg? (.compareTo ^Comparable bigmin z))
(recur (kv/seek i (c/encode-entity+z+tx-id-key-to
(.get idx/seek-buffer-tl)
eid
bigmin)))))))))))
(defn- find-entity-tx-within-range-with-highest-valid-time [i min max eid prev-candidate]
(if-let [[_ ^EntityTx entity-tx z :as candidate] (find-first-entity-tx-within-range i min max eid)]
(let [[^long x ^long y] (morton/morton-number->longs z)
min-x (long (first (morton/morton-number->longs min)))
max-x (dec x)]
(if (and (not (pos? (Long/compareUnsigned min-x max-x)))
(not= y -1))
(let [min (morton/longs->morton-number
min-x
(unchecked-inc y))
max (morton/longs->morton-number
max-x
-1)]
(recur i min max eid candidate))
candidate))
prev-candidate))
(defn- ->entity-tx [[k v]]
(-> (c/decode-entity+vt+tt+tx-id-key-from k)
(idx/enrich-entity-tx v)))
(defn entity-history-seq-ascending
([i eid] ([i eid] (entity-history-seq-ascending i eid {})))
([i eid {{^Date start-vt :crux.db/valid-time, ^Date start-tt :crux.tx/tx-time} :start
{^Date end-vt :crux.db/valid-time, ^Date end-tt :crux.tx/tx-time} :end
:keys [with-corrections?]}]
(let [seek-k (c/encode-entity+vt+tt+tx-id-key-to nil (c/->id-buffer eid) start-vt)]
(-> (all-keys-in-prefix i (mem/limit-buffer seek-k (+ c/index-id-size c/id-size)) seek-k
{:reverse? true, :entries? true})
(->> (map ->entity-tx))
(cond->> end-vt (take-while (fn [^EntityTx entity-tx]
(neg? (compare (.vt entity-tx) end-vt))))
start-tt (remove (fn [^EntityTx entity-tx]
(neg? (compare (.tt entity-tx) start-tt))))
end-tt (filter (fn [^EntityTx entity-tx]
(neg? (compare (.tt entity-tx) end-tt)))))
(cond-> (not with-corrections?) (->> (partition-by :vt)
(map last)))))))
(defn entity-history-seq-descending
([i eid] (entity-history-seq-descending i eid {}))
([i eid {{^Date start-vt :crux.db/valid-time, ^Date start-tt :crux.tx/tx-time} :start
{^Date end-vt :crux.db/valid-time, ^Date end-tt :crux.tx/tx-time} :end
:keys [with-corrections?]}]
(let [seek-k (c/encode-entity+vt+tt+tx-id-key-to nil (c/->id-buffer eid) start-vt)]
(-> (all-keys-in-prefix i (-> seek-k (mem/limit-buffer (+ c/index-id-size c/id-size))) seek-k
{:entries? true})
(->> (map ->entity-tx))
(cond->> end-vt (take-while (fn [^EntityTx entity-tx]
(pos? (compare (.vt entity-tx) end-vt))))
start-tt (remove (fn [^EntityTx entity-tx]
(pos? (compare (.tt entity-tx) start-tt))))
end-tt (filter (fn [^EntityTx entity-tx]
(pos? (compare (.tt entity-tx) end-tt)))))
(cond-> (not with-corrections?) (->> (partition-by :vt)
(map first)))))))
(defrecord KvIndexStore [object-store snapshot]
Closeable
(close [_]
(cio/try-close snapshot))
kv/KvSnapshot
(new-iterator ^java.io.Closeable [this]
(kv/new-iterator snapshot))
(get-value [this k]
(kv/get-value snapshot k))
db/IndexStore
(av [this a min-v entity-resolver-fn]
(let [attr-buffer (c/->id-buffer a)
prefix (c/encode-avec-key-to nil attr-buffer)
i (new-prefix-kv-iterator (kv/new-iterator this) prefix)]
(some->> (c/encode-avec-key-to
(.get idx/seek-buffer-tl)
attr-buffer
(buffer-or-value-buffer min-v))
(kv/seek i)
((fn step [^DirectBuffer k]
(when k
(cons (MapEntry/create (.value (c/decode-avec-key->evc-from k))
:crux.index.binary-placeholder/value)
(lazy-seq
(some->> (inc-unsigned-prefix-buffer k (- (.capacity k) c/id-size c/id-size))
(kv/seek i)
(step))))))))))
(ave [this a v min-e entity-resolver-fn]
(let [attr-buffer (c/->id-buffer a)
value-buffer (buffer-or-value-buffer v)
prefix (c/encode-avec-key-to nil attr-buffer value-buffer)
i (new-prefix-kv-iterator (kv/new-iterator this) prefix)]
(some->> (c/encode-avec-key-to
(.get idx/seek-buffer-tl)
attr-buffer
value-buffer
(buffer-or-id-buffer min-e))
(kv/seek i)
((fn step [^DirectBuffer k]
(when k
(let [eid (.eid (c/decode-avec-key->evc-from k))
eid-buffer (c/->id-buffer eid)]
(concat
(when-let [^EntityTx entity-tx (entity-resolver-fn eid-buffer)]
(let [version-k (c/encode-avec-key-to
(.get idx/seek-buffer-tl)
attr-buffer
value-buffer
eid-buffer
(c/->id-buffer (.content-hash entity-tx)))]
(when (kv/get-value this version-k)
[(MapEntry/create eid-buffer entity-tx)])))
(lazy-seq
(some->> (inc-unsigned-prefix-buffer k (- (.capacity k) c/id-size))
(kv/seek i)
(step)))))))))))
(ae [this a min-e entity-resolver-fn]
(let [attr-buffer (c/->id-buffer a)
prefix (c/encode-aecv-key-to nil attr-buffer)
i (new-prefix-kv-iterator (kv/new-iterator this) prefix)]
(some->> (c/encode-aecv-key-to
(.get idx/seek-buffer-tl)
attr-buffer
(buffer-or-id-buffer min-e))
(kv/seek i)
((fn step [^DirectBuffer k]
(when k
(let [eid (.eid (c/decode-aecv-key->evc-from k))
eid-buffer (c/->id-buffer eid)]
(concat
(when (entity-resolver-fn eid-buffer)
[(MapEntry/create eid-buffer :crux.index.binary-placeholder/entity)])
(lazy-seq
(some->> (inc-unsigned-prefix-buffer k (- (.capacity k) c/id-size c/id-size))
(kv/seek i)
(step)))))))))))
(aev [this a e min-v entity-resolver-fn]
(let [attr-buffer (c/->id-buffer a)
eid-buffer (buffer-or-id-buffer e)
^EntityTx entity-tx (entity-resolver-fn eid-buffer)
content-hash-buffer (c/->id-buffer (.content-hash entity-tx))
prefix (c/encode-aecv-key-to nil attr-buffer eid-buffer content-hash-buffer)
i (new-prefix-kv-iterator (kv/new-iterator this) prefix)]
(some->> (c/encode-aecv-key-to
(.get idx/seek-buffer-tl)
attr-buffer
eid-buffer
content-hash-buffer
(buffer-or-value-buffer min-v))
(kv/seek i)
((fn step [^DirectBuffer k]
(when k
(cons (MapEntry/create (.value (c/decode-aecv-key->evc-from k))
entity-tx)
(lazy-seq (step (kv/next i))))))))))
(entity-as-of [this eid valid-time transact-time]
(with-open [i (kv/new-iterator snapshot)]
(let [prefix-size (+ c/index-id-size c/id-size)
eid-buffer (c/->id-buffer eid)
seek-k (c/encode-entity+vt+tt+tx-id-key-to
(.get idx/seek-buffer-tl)
eid-buffer
valid-time
transact-time
nil)]
(loop [k (kv/seek i seek-k)]
(when (and k (mem/buffers=? seek-k k prefix-size))
(let [entity-tx (idx/safe-entity-tx (c/decode-entity+vt+tt+tx-id-key-from k))
v (kv/value i)]
(if (<= (compare (.tt entity-tx) transact-time) 0)
(when-not (mem/buffers=? c/nil-id-buffer v)
(idx/enrich-entity-tx entity-tx v))
(if morton/*use-space-filling-curve-index?*
(let [seek-z (c/encode-entity-tx-z-number valid-time transact-time)]
(when-let [[k v] (find-entity-tx-within-range-with-highest-valid-time i seek-z morton/z-max-mask eid-buffer nil)]
(when-not (= ::deleted-entity k)
v)))
(recur (kv/next i))))))))))
(entity-history-range [this eid valid-time-start transaction-time-start valid-time-end transaction-time-end]
(idx/entity-history-range snapshot eid valid-time-start transaction-time-start valid-time-end transaction-time-end))
(open-entity-history [this eid sort-order opts]
(let [i (kv/new-iterator snapshot)
entity-history-seq (case sort-order
:asc entity-history-seq-ascending
:desc entity-history-seq-descending)]
(cio/->cursor #(.close i)
(entity-history-seq i eid opts))))
(all-content-hashes [this eid]
(with-open [i (kv/new-iterator snapshot)]
(->> (all-keys-in-prefix i (c/encode-aecv-key-to (.get idx/seek-buffer-tl) (c/->id-buffer :crux.db/id) (c/->id-buffer eid)))
(map c/decode-aecv-key->evc-from)
(map #(.content-hash ^EntityValueContentHash %))
(set))))
(decode-value [this a content-hash value-buffer]
(assert (some? value-buffer) (str a))
(if (c/can-decode-value-buffer? value-buffer)
(c/decode-value-buffer value-buffer)
(let [doc (db/get-document this content-hash)
value-or-values (get doc a)]
(if-not (idx/multiple-values? value-or-values)
value-or-values
(loop [[x & xs] (idx/vectorize-value value-or-values)]
(if (mem/buffers=? value-buffer (c/value->buffer x (.get value-buffer-tl)))
x
(when xs
(recur xs))))))))
(encode-value [this value]
(c/->value-buffer value))
(get-document [this content-hash]
(db/get-single-object object-store snapshot content-hash))
(open-nested-index-store [this]
(->KvIndexStore object-store (lru/new-cached-snapshot snapshot false))))
(defn content-idx-kvs [content-hash doc]
(let [id (c/->id-buffer (:crux.db/id doc))
content-hash (c/->id-buffer content-hash)]
(->> (for [[k v] doc
:let [k (c/->id-buffer k)]
v (idx/vectorize-value v)
:let [v (c/->value-buffer v)]
:when (pos? (.capacity v))]
[(MapEntry/create (c/encode-avec-key-to nil k v id content-hash) c/empty-buffer)
(MapEntry/create (c/encode-aecv-key-to nil k id content-hash v) c/empty-buffer)])
(apply concat))))
(defrecord KvIndexer [kv-store object-store]
db/Indexer
(index-docs [this docs]
(let [content-idx-kvs (when (seq docs)
(->> docs
(mapcat (fn [[k doc]] (content-idx-kvs k doc)))))
_ (some->> (seq content-idx-kvs) (kv/store kv-store))]
(db/put-objects object-store docs)
(->> content-idx-kvs (transduce (comp (mapcat seq) (map mem/capacity)) +))))
(unindex-docs [this docs]
(->> docs
(mapcat (fn [[k doc]] (content-idx-kvs k doc)))
keys
(kv/delete kv-store)))
(mark-tx-as-failed [this {:crux.tx/keys [tx-id] :as tx}]
(kv/store kv-store [(idx/meta-kv ::latest-completed-tx tx)
[(c/encode-failed-tx-id-key-to nil tx-id) c/empty-buffer]]))
(index-entity-txs [this tx entity-txs]
(kv/store kv-store (->> (conj (mapcat etx->kvs entity-txs)
(idx/meta-kv ::latest-completed-tx tx))
(into (sorted-map-by mem/buffer-comparator)))))
(store-index-meta [_ k v]
(idx/store-meta kv-store k v))
(read-index-meta [_ k]
(idx/read-meta kv-store k))
(latest-completed-tx [this]
(db/read-index-meta this ::latest-completed-tx))
(tx-failed? [this tx-id]
(with-open [snapshot (kv/new-snapshot kv-store)]
(nil? (kv/get-value snapshot (c/encode-failed-tx-id-key-to nil tx-id)))))
(open-index-store [this]
(->KvIndexStore object-store (lru/new-cached-snapshot (kv/new-snapshot kv-store) true)))
status/Status
(status-map [this]
{:crux.index/index-version (idx/current-index-version kv-store)
:crux.doc-log/consumer-state (db/read-index-meta this :crux.doc-log/consumer-state)
:crux.tx-log/consumer-state (db/read-index-meta this :crux.tx-log/consumer-state)}))
(def kv-indexer
{:start-fn (fn [{:crux.node/keys [kv-store object-store]} args]
(->KvIndexer kv-store object-store))
:deps [:crux.node/kv-store :crux.node/object-store]})