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_quarto.yml
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_quarto.yml
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project:
type: book
book:
title: "Bacterial filamentation: a bet for survival in stressful environments"
author:
- name: "Jesús Vélez Santiago"
orcid: 0000-0001-5128-3838
url: https://jvelezmagic.com
affiliations:
- name: Center for Genomic Sciences - National Autonomous University of Mexico
- name: "Rafael Peña-Miller"
orcid: 0000-0002-2767-0640
affiliations:
- name: Center for Genomic Sciences - National Autonomous University of Mexico
url: http://www.penamiller.com/lab/
date: today
search: true
repo-url: https://github.com/jvelezmagic/bacterial-filamentation-research
repo-actions: [source, issue, edit]
downloads: [pdf]
sharing: [twitter, linkedin]
chapters:
- index.qmd
- 00-introduction.qmd
- 00-introduction-hypothesis.qmd
- 01-image-processing.qmd
- 02-experiment-analysis.qmd
- 03-model-analysis.qmd
- 04-discussion.qmd
- 98-appendices.qmd
- 99-references.qmd
comments:
hypothesis: true
cover-image: bacterial-filamentation-cover.png
bibliography: [references.bib, project-general-packages.bib, project-R-packages.bib]
knitr:
opts_chunk:
collapse: true
comment: "#>"
out.width: "100%"
execute:
echo: false
warning: false
format:
html:
theme:
light: cosmo
dark: darkly
code-tools: true
toc: true
toc-depth: 4
knitr:
opts_chunk:
dev: "svglite"
pdf:
documentclass: scrreprt
toc: true
toc-depth: 4
lof: true
lot: true
geometry:
- left=2.5cm
- right=2.5cm
- heightrounded
colorlinks: true
papersize: a4
link-citations: true
fontsize: 12pt
fig-pos: H
dpi: 600
fig-width: 8
fig-height: 6
editor: visual