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project-general-packages.bib
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project-general-packages.bib
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@article{Julia-2017,
title={Julia: A fresh approach to numerical computing},
author={Bezanson, Jeff and Edelman, Alan and Karpinski, Stefan and Shah, Viral B},
journal={SIAM {R}eview},
volume={59},
number={1},
pages={65--98},
year={2017},
publisher={SIAM},
doi={10.1137/141000671},
url={https://epubs.siam.org/doi/10.1137/141000671}
}
@article{datseris2020,
title = {DrWatson: the perfect sidekick for your scientific inquiries},
author = {{Datseris}, {George} and {Isensee}, {Jonas} and {Pech}, {Sebastian} and {Gál}, {Tamás}},
year = {2020},
month = {10},
date = {2020-10-29},
journal = {Journal of Open Source Software},
pages = {2673},
volume = {5},
number = {54},
doi = {10.21105/joss.02673},
url = {http://dx.doi.org/10.21105/joss.02673}
}
@article{rackauckas2017differentialequations,
title={Differentialequations.jl--a performant and feature-rich ecosystem for solving differential equations in julia},
author={Rackauckas, Christopher and Nie, Qing},
journal={Journal of Open Research Software},
volume={5},
number={1},
year={2017},
publisher={Ubiquity Press}
}
@article{rackauckas2017adaptive,
title={Adaptive methods for stochastic differential equations via natural embeddings and rejection sampling with memory},
author={Rackauckas, Christopher and Nie, Qing},
journal={Discrete and continuous dynamical systems. Series B},
volume={22},
number={7},
pages={2731},
year={2017},
publisher={NIH Public Access}
}
@article{rackauckas_stability-optimized_2018,
title = {Stability-{Optimized} {High} {Order} {Methods} and {Stiffness} {Detection} for {Pathwise} {Stiff} {Stochastic} {Differential} {Equations}},
url = {http://arxiv.org/abs/1804.04344},
journal = {arXiv:1804.04344 [math]},
author = {Rackauckas, Christopher and Nie, Qing},
year = {2018},
}
@book{white2021,
title = {JuliaData/DataFrames.jl: v1.2.2},
author = {{White}, {John Myles} and {Bogumi{\l} Kami{\'{n}}ski} and {Powerdistribution} and {Bouchet-Valat}, {Milan} and {Garborg}, {Sean} and {Quinn}, {Jacob} and {Kornblith}, {Simon} and {Cjprybol} and {Stukalov}, {Alexey} and {Bates}, {Douglas} and {Short}, {Tom} and {DuBois}, {Chris} and {Harris}, {Harlan} and {Squire}, {Kevin} and {Arslan}, {Alex} and {Pdeffebach} and {Anthoff}, {David} and {Kleinschmidt}, {Dave} and {Noack}, {Andreas} and {Viral B. Shah} and {Mellnik}, {Alex} and {Arakaki}, {Takafumi} and {Tanmay Mohapatra} and {, Peter} and {Karpinski}, {Stefan} and {Dahua Lin} and {Timema} and {ExpandingMan} and {Oswald}, {Florian} and {Chagas}, {Ronan Arraes Jardim}},
year = {2021},
month = {07},
date = {2021-07-31},
publisher = {Zenodo},
doi = {10.5281/ZENODO.3376177},
url = {https://zenodo.org/record/3376177}
}
@book{10.5555/1593511,
author = {Van Rossum, Guido and Drake, Fred L.},
title = {Python 3 Reference Manual},
year = {2009},
isbn = {1441412697},
publisher = {CreateSpace},
address = {Scotts Valley, CA}
}
@ARTICLE{2020NumPy-Array,
author = {Harris, Charles R. and Millman, K. Jarrod and van der Walt, Stéfan J and Gommers, Ralf and Virtanen, Pauli and Cournapeau, David and Wieser, Eric and Taylor, Julian and Berg, Sebastian and Smith, Nathaniel J. and Kern, Robert and Picus, Matti and Hoyer, Stephan and van Kerkwijk, Marten H. and Brett, Matthew and Haldane, Allan and Fernández del Río, Jaime and Wiebe, Mark and Peterson, Pearu and Gérard-Marchant, Pierre and Sheppard, Kevin and Reddy, Tyler and Weckesser, Warren and Abbasi, Hameer and Gohlke, Christoph and Oliphant, Travis E.},
title = {Array programming with {NumPy}},
journal = {Nature},
year = {2020},
volume = {585},
pages = {357–362},
doi = {10.1038/s41586-020-2649-2}
}
@article{hunter2007matplotlib,
title={Matplotlib: A 2D graphics environment},
author={Hunter, John D},
journal={Computing in science \& engineering},
volume={9},
number={3},
pages={90--95},
year={2007},
publisher={IEEE}
}
@techreport{hagberg2008exploring,
title={Exploring network structure, dynamics, and function using NetworkX},
author={Hagberg, Aric and Swart, Pieter and S Chult, Daniel},
year={2008},
institution={Los Alamos National Lab.(LANL), Los Alamos, NM (United States)}
}
@inproceedings{mckinney2010data,
title={Data structures for statistical computing in python},
author={McKinney, Wes and others},
booktitle={Proceedings of the 9th Python in Science Conference},
volume={445},
pages={51--56},
year={2010},
organization={Austin, TX}
}
@Misc{shapely2007,
author = {Sean Gillies and others},
organization = {toblerity.org},
title = {Shapely: manipulation and analysis of geometric objects},
year = {2007--},
url = "https://github.com/Toblerity/Shapely"
}
@book{van1995python,
title={The Python Library Reference, release 3.8.2},
author={Van Rossum, Guido},
year={2020},
publisher={Python Software Foundation}
}
@article{perez2007ipython,
title={IPython: a system for interactive scientific computing},
author={P{\'e}rez, Fernando and Granger, Brian E},
journal={Computing in Science \& Engineering},
volume={9},
number={3},
year={2007},
publisher={IEEE}
}
@book{sofroniew2021a,
title = {napari/napari: 0.4.12rc2},
author = {{Sofroniew}, {Nicholas} and {Talley Lambert} and {Evans}, {Kira} and {Nunez-Iglesias}, {Juan} and {Bokota}, {Grzegorz} and {Peña-Castellanos}, {Gonzalo} and {Winston}, {Philip} and {Yamauchi}, {Kevin} and {Bussonnier}, {Matthias} and {Pop}, {Draga Doncila} and {Ziyang Liu} and {ACS} and {, Pam} and {Alisterburt} and {Buckley}, {Genevieve} and {Sweet}, {Andy} and {Gaifas}, {Lorenzo} and {Rodríguez-Guerra}, {Jaime} and {Lukasz Migas} and {Hilsenstein}, {Volker} and {Jordão Bragantini} and {Lee}, {Gregory R.} and {, Hector} and {Freeman}, {Jeremy} and {Boone}, {Peter} and {Lowe}, {Alan R} and {Gohlke}, {Christoph} and {Loic Royer} and {PIERRÉ}, {Andrea} and {Har-Gil}, {Hagai}},
year = {2021},
month = {10},
date = {2021-10-21},
publisher = {Zenodo},
doi = {10.5281/ZENODO.3555620},
url = {https://zenodo.org/record/3555620}
}
@article{vanderwalt2014,
title = {scikit-image: image processing in Python},
author = {{van der Walt}, {Stéfan} and {Schönberger}, {Johannes L.} and {Nunez-Iglesias}, {Juan} and {Boulogne}, {François} and {Warner}, {Joshua D.} and {Yager}, {Neil} and {Gouillart}, {Emmanuelle} and {Yu}, {Tony}},
year = {2014},
month = {06},
date = {2014-06-19},
journal = {PeerJ},
pages = {e453},
volume = {2},
doi = {10.7717/peerj.453},
url = {http://dx.doi.org/10.7717/peerj.453},
langid = {en}
}
@inproceedings{rocklin2015dask,
title={Dask: Parallel computation with blocked algorithms and task scheduling},
author={Rocklin, Matthew},
booktitle={Proceedings of the 14th python in science conference},
number={130-136},
year={2015},
organization={Citeseer}
}