This package contains a set of programs and utilities for working with genomic
data. Software in the 'alpha' folder is awaiting updating, testing, or
documentation and should be handled with care. Please see the documentation
page or in-program --help
for
usage and details.
These tools are now available through the Bioconda package b2b-utils. You can install with e.g.:
conda install -c bioconda b2b-utils
# or probably faster:
mamba install -c bioconda b2b-utils
Note that not all tool dependencies are automatically installed along with the
base package, in order to keep the installation footprint down. Each tool
checks for any underlying dependencies at run-time and should give an
informative error if they are not found. All dependencies are available within
Conda and can be installed individually as needed. Alternatively, you can
install a complete environment, including all tool dependencies, using the
environment.yml
file included in this repository. The following command will
install b2b-utils and all dependencies into the b2b-utils
environment:
conda env create -f <path-to-downloaded-environment.yml>
# or probably faster:
mamba env create -f <path-to-downloaded-environment.yml>
NOTE: This is not necessary for most of the tools in this suite, which should run from the base Conda package without any additional installs.
For non-Conda users, the tools can be installed from source in Linux (and possibly other platforms) as follows:
git clone https://github.com/jvolkening/b2b-utils.git
cd b2b-utils
perl Build.PL
./Build
./Build test
./Build install